Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

56169720 .. 56173897

Gene Structure 4178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG387900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTGCGGCGCCACCCACCGAAGACGTCAACGATTGGGTCAAACTCGCCATGAAAGACGACGTGGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCCGCCGCCACCGTCGATGTTCAAGTCTCCAGCTTTGAAGCTCGGGTGGAGTGTGCGGCAGAGGCGCTCCAAGCACGTGCCGCGCCACCCCAGCGACGTCGTTGTTGACGTCAAAAAGAAGAAGAAGGCGGCGGAGGAGTCGACCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCCGCCTGAGCCGACCGACGCCGCGAGATCTAAGGTTGCTGTTACAAGTTGCACGACCATCTCCAAGAGGCCGAGAAAGAGGAAGACCTTAGCTCAACTTAAAGAGGAGGAGAGTCTTCTATTGAAGGAAAGACGCAATTTGAAAAAGGAACTGCTAAACCTACGCCTCAATGTCGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAGAATAAAGCTGCAGCAAACAATGATGAAAGTTGCCTCTTCCTCTGCATCGGGTGAAGCCATTTCTTATCAACCAGCACAAGTAAATGTAGTTAGTGAACTTACTAGAATCATTGATCTTGGCACTTCACAGAGTTCCTGTCCATCCAACATTTCTTGCATGGTACACGAAGTTGAGAACTGCCATGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAACTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.39

Weight (kDa)

9.16

Isoelectric Point (pI)

68.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	3 cut(s)	30, 210, 222
AccB1I	GGYRCC	3 cut(s)	10, 290, 314
AccBSI	CCGCTC	2 cut(s)	277, 288
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	2 cut(s)	193, 359
AclWI	GGATC	1 cut(s)	759
AcvI	CACGTG	1 cut(s)	187
AcyI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
AfaI	GTAC	1 cut(s)	708
AgsI	TTSAA	6 cut(s)	133, 148, 460, 478, 541, 770
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	7 cut(s)	143, 151, 428, 537, 553, 734, 807
AluI	AGCT	7 cut(s)	143, 151, 428, 537, 553, 734, 807
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	759
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	404, 522
ApeKI	GCWGC	4 cut(s)	5, 553, 556, 734
AspLEI	GCGC	4 cut(s)	13, 177, 195, 293
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	152
BanI	GGYRCC	3 cut(s)	10, 290, 314
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	3 cut(s)	30, 425, 443
BbvI	GCAGC	3 cut(s)	540, 568, 721
BccI	CCATC	2 cut(s)	401, 694
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	1 cut(s)	554
BfoI	RGCGCY	3 cut(s)	14, 178, 294
BglII	AGATCT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	3 cut(s)	12, 292, 316
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	3 cut(s)	30, 425, 443
BpmI	CTGGAG	2 cut(s)	123, 304
Bpu10I	CCTNAGC	2 cut(s)	342, 424
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	748
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	1 cut(s)	686
BseJI	GATNNNNATC	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	260, 455, 458
BseXI	GCAGC	3 cut(s)	540, 568, 721
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	193, 359
Bsh1285I	CGRYCG	2 cut(s)	72, 351
BshFI	GGCC	2 cut(s)	406, 524
BshNI	GGYRCC	3 cut(s)	10, 290, 314
BsiEI	CGRYCG	2 cut(s)	72, 351
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	406, 524
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	362, 658, 751, 775
BspANI	GGCC	2 cut(s)	406, 524
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	193, 359
BspLI	GGNNCC	3 cut(s)	12, 292, 316
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	1 cut(s)	759
BspT107I	GGYRCC	3 cut(s)	10, 290, 314
BsrBI	CCGCTC	2 cut(s)	277, 288
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	4 cut(s)	362, 658, 751, 775
BssNI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	318, 586
BstACI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	262, 335
BstDEI	CTNAG	3 cut(s)	342, 366, 424
BstF5I	GGATG	1 cut(s)	686
BstFNI	CGCG	2 cut(s)	193, 359
BstH2I	RGCGCY	3 cut(s)	14, 178, 294
BstHHI	GCGC	4 cut(s)	13, 177, 195, 293
BstKTI	GATC	4 cut(s)	365, 661, 754, 778
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	362, 658, 751, 775
BstMCI	CGRYCG	2 cut(s)	72, 351
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	2 cut(s)	193, 359
BstV1I	GCAGC	3 cut(s)	540, 568, 721
BstV2I	GAAGAC	3 cut(s)	30, 425, 443
BstX2I	RGATCY	2 cut(s)	362, 751
BstYI	RGATCY	2 cut(s)	362, 751
BsuRI	GGCC	2 cut(s)	406, 524
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	686
Cac8I	GCNNGC	2 cut(s)	262, 335
CfoI	GCGC	4 cut(s)	13, 177, 195, 293
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	2 cut(s)	362, 477
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	3 cut(s)	52, 703, 728
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	3 cut(s)	342, 366, 424
DinI	GGCGCC	2 cut(s)	12, 292
DpnI	GATC	4 cut(s)	364, 660, 753, 777
DpnII	GATC	4 cut(s)	362, 658, 751, 775
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	318, 586
EarI	CTCTTC	2 cut(s)	318, 586
EciI	GGCGGA	1 cut(s)	257
Eco72I	CACGTG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	281
EgeI	GGCGCC	2 cut(s)	12, 292
EheI	GGCGCC	2 cut(s)	12, 292
FaeI	CATG	3 cut(s)	55, 706, 731
FaiI	YATR	4 cut(s)	53, 704, 729, 796
FatI	CATG	3 cut(s)	51, 702, 727
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	1 cut(s)	673
FspBI	CTAG	1 cut(s)	648
GlaI	GCGC	4 cut(s)	12, 176, 194, 292
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	2 cut(s)	123, 304
HaeII	RGCGCY	3 cut(s)	14, 178, 294
HaeIII	GGCC	2 cut(s)	406, 524
HapII	CCGG	1 cut(s)	749
HgaI	GACGC	2 cut(s)	362, 477
HhaI	GCGC	4 cut(s)	13, 177, 195, 293
Hin1I	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Hin1II	CATG	3 cut(s)	55, 706, 731
Hin6I	GCGC	4 cut(s)	11, 175, 193, 291
HinP1I	GCGC	4 cut(s)	11, 175, 193, 291
HincII	GTYRAC	3 cut(s)	31, 217, 252
HindII	GTYRAC	3 cut(s)	31, 217, 252
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	4 cut(s)	248, 326, 448, 651
HpaII	CCGG	1 cut(s)	749
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	5 cut(s)	31, 217, 252, 641, 709
Hpy188I	TCNGA	3 cut(s)	95, 322, 787
Hpy188III	TCNNGA	2 cut(s)	511, 770
Hpy8I	GTNNAC	5 cut(s)	31, 217, 252, 641, 709
Hpy99I	CGWCG	6 cut(s)	65, 77, 127, 209, 212, 356
HpyAV	CCTTC	2 cut(s)	229, 454
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	5 cut(s)	27, 63, 186, 207, 219
HpyCH4V	TGCA	4 cut(s)	387, 556, 590, 702
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
HpyF3I	CTNAG	3 cut(s)	342, 366, 424
HpySE526I	ACGT	5 cut(s)	27, 63, 186, 207, 219
Hsp92I	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Hsp92II	CATG	3 cut(s)	55, 706, 731
HspAI	GCGC	4 cut(s)	11, 175, 193, 291
KasI	GGCGCC	2 cut(s)	10, 290
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	362, 658, 751, 775
LmnI	GCTCC	2 cut(s)	182, 285
Lsp1109I	GCAGC	3 cut(s)	540, 568, 721
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	5 cut(s)	27, 63, 186, 207, 219
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	4 cut(s)	364, 660, 753, 777
MbiI	CCGCTC	2 cut(s)	277, 288
MboI	GATC	4 cut(s)	362, 658, 751, 775
MboII	GAAGA	8 cut(s)	35, 241, 244, 335, 430, 443, 573, 752
MflI	RGATCY	2 cut(s)	362, 751
MluCI	AATT	1 cut(s)	472
Mly113I	GGCGCC	2 cut(s)	11, 291
MlyI	GAGTC	3 cut(s)	257, 335, 457
MmeI	TCCRAC	1 cut(s)	714
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	193, 359
MwoI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
NarI	GGCGCC	2 cut(s)	11, 291
NdeII	GATC	4 cut(s)	362, 658, 751, 775
NlaIII	CATG	3 cut(s)	55, 706, 731
NlaIV	GGNNCC	3 cut(s)	12, 292, 316
NmeAIII	GCCGAG	2 cut(s)	127, 432
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 216
PfeI	GAWTC	1 cut(s)	651
PfoI	TCCNGGA	1 cut(s)	281
PleI	GAGTC	3 cut(s)	256, 334, 456
PluTI	GGCGCC	2 cut(s)	14, 294
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	3 cut(s)	256, 334, 456
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	12, 292, 316
PspPI	GGNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	362, 751
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
SalI	GTCGAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	362, 658, 751, 775
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	3 cut(s)	257, 335, 457
ScrFI	CCNGG	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	554
SfoI	GGCGCC	2 cut(s)	12, 292
Sse9I	AATT	1 cut(s)	472
SspDI	GGCGCC	2 cut(s)	10, 290
SspMI	CTAG	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	5 cut(s)	30, 66, 189, 210, 222
TaqI	TCGA	4 cut(s)	87, 125, 251, 510
TaqII	GACCGA	2 cut(s)	289, 365
TasI	AATT	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	4 cut(s)	5, 553, 556, 734
TspDTI	ATGAA	4 cut(s)	68, 546, 584, 744
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	648
ZraI	GACGTC	3 cut(s)	28, 208, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.