Prupe.3G095200_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006131
Physical Location & Seq
Reverse (-)
7131511 .. 7136711
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G095200.1

Sequence Viewer

Length: 951 bp
ATGGCTGCTGCTGCTACTGACGACGACGGCTGGGTCAACCTGGCCATGAACGACGAGGCGGCGGTCGTCGACGTTCTTCTCCTCCTCAGGCACGCCGAGCCGCCGCGGCCGTCCAAGACAAGCCGTGACCTTCCGTCTCTGCGGTGGAGCGTTAGGCAGCGCCGCTCCAAGAACGTGCCACGTCATCACCATGCCAGCGACCTCGTCGTCGTTGAGGGTAAGGATAAGAAGAAGGGCGAGTCGAGCGCCGCCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTTAGCGGCGGCGCCCTCGACGGCTCCGAAGAGTCCAGCAGGCCCCCCAAGCCGACCGATGCCGCGAGATCTAAGGTTGCTGTTAGAAGTGAAGCAGCCATCTTCAAGAGACCAAGAAAGAAGAAGACGCTTGCTGAACTAAAAGAGGAGGAGAGTTTTCTGTTGAAGGAAAGACGAAACTTGAAAAATCAACTGGCAACACTACACCTCACTGTTGAAAAACAGAAGGCCACAAATGAAAGCTTGAGAAAAATAAAGATGATTACACGTTGTCTCAAGACTTCAAGGTCACTTTCATTTCAACAGTGGCCTACTCCTGGTTCTCTAGTTTCCTCCACTAAGGATGCTTCCTGCATTCAACTATGTCTTGATTTGCAGTTGCCCCTGACAACGATGAAAGCTACAACTTCTGTTGTGCCTGGTGAATCCATTTCGTACCAACTTGAGCAAGTAAATGCAGTTGGTGTCCCTACAAAAATCATGCCAACAATTGTTCATTGCAGTAATCTTGGCGCTTCCCAAAGCTCCTGTCCACCAAATGTTTCTTGCAAGGTAGAAGAGGCTGGGAGCCAGGATGCTGCCTTTTCGCTACCTGATTTAAATCTACCATTTGGAGATGACCCTAGCTCCGAGGTTTTATACCGAACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.32

Weight (kDa)

9.27

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 32, 206, 583
AccB1I GGYRCC 2 cut(s) 287, 308
AccBSI CCGCTC 3 cut(s) 165, 274, 285
AccI GTMKAC 1 cut(s) 69
AccII CGCG 2 cut(s) 106, 362
AcoI YGGCCR 2 cut(s) 42, 107
AcyI GRCGYC 2 cut(s) 288, 309
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 7 cut(s) 403, 463, 481, 515, 582, 599, 656
AhdI GACNNNNNGTC 1 cut(s) 133
AjiI CACGTC 1 cut(s) 182
AjnI CCWGG 5 cut(s) 39, 278, 613, 715, 867
AluBI AGCT 5 cut(s) 540, 698, 822, 924, 948
AluI AGCT 5 cut(s) 540, 698, 822, 924, 948
Alw26I GTCTC 3 cut(s) 141, 400, 575
AoxI GGCC 5 cut(s) 42, 107, 338, 525, 605
ApeKI GCWGC 6 cut(s) 5, 8, 11, 157, 392, 875
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
AspLEI GCGC 5 cut(s) 162, 248, 290, 311, 812
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 179, 731
AxyI CCTNAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 2 cut(s) 287, 308
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 169, 404, 862
BccI CCATC 1 cut(s) 404
BceAI ACGGC 4 cut(s) 43, 94, 108, 334
BciT130I CCWGG 5 cut(s) 41, 280, 615, 717, 869
BcoDI GTCTC 3 cut(s) 141, 400, 575
BfaI CTAG 2 cut(s) 623, 921
BfoI RGCGCY 5 cut(s) 163, 249, 291, 312, 813
BglI GCCNNNNNGGC 1 cut(s) 106
BglII AGATCT 1 cut(s) 365
Bme1390I CCNGG 5 cut(s) 41, 280, 615, 717, 869
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 5 cut(s) 289, 310, 322, 341, 866
BmrFI CCNGG 5 cut(s) 41, 280, 615, 717, 869
BmsI GCATC 3 cut(s) 346, 631, 862
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 301
BpuEI CTTGAG 3 cut(s) 557, 562, 761
BsaBI GATNNNNATC 1 cut(s) 897
BsaHI GRCGYC 2 cut(s) 288, 309
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 104, 927
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 495
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 793
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 5 cut(s) 41, 280, 615, 717, 869
BseDI CCNNGG 2 cut(s) 104, 927
BseGI GGATG 2 cut(s) 646, 877
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMI GCAATG 1 cut(s) 793
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 4 cut(s) 71, 74, 458, 461
BseX3I CGGCCG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 169, 404, 862
BseYI CCCAGC 2 cut(s) 30, 860
Bsh1236I CGCG 2 cut(s) 106, 362
Bsh1285I CGRYCG 3 cut(s) 66, 110, 354
BshFI GGCC 5 cut(s) 44, 109, 340, 527, 607
BshNI GGYRCC 2 cut(s) 287, 308
BsiEI CGRYCG 3 cut(s) 66, 110, 354
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 3 cut(s) 141, 400, 575
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 5 cut(s) 44, 109, 340, 527, 607
Bso31I GGTCTC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 365
BspANI GGCC 5 cut(s) 44, 109, 340, 527, 607
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 2 cut(s) 106, 362
BspLI GGNNCC 5 cut(s) 289, 310, 322, 341, 866
BspT107I GGYRCC 2 cut(s) 287, 308
BspTNI GGTCTC 1 cut(s) 400
BsrBI CCGCTC 3 cut(s) 165, 274, 285
BsrDI GCAATG 1 cut(s) 793
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 104, 927
BssMI GATC 1 cut(s) 365
BssNI GRCGYC 2 cut(s) 288, 309
Bst2UI CCWGG 5 cut(s) 41, 280, 615, 717, 869
Bst4CI ACNGT 2 cut(s) 511, 603
Bst6I CTCTTC 2 cut(s) 321, 849
BstACI GRCGYC 2 cut(s) 288, 309
BstC8I GCNNGC 5 cut(s) 93, 196, 259, 338, 429
BstDEI CTNAG 3 cut(s) 86, 369, 636
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 646, 877
BstFNI CGCG 2 cut(s) 106, 362
BstH2I RGCGCY 5 cut(s) 163, 249, 291, 312, 813
BstHHI GCGC 5 cut(s) 162, 248, 290, 311, 812
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 3 cut(s) 141, 400, 575
BstMBI GATC 1 cut(s) 365
BstMCI CGRYCG 3 cut(s) 66, 110, 354
BstMWI GCNNNNNNNGC 6 cut(s) 11, 97, 106, 243, 254, 346
BstNI CCWGG 5 cut(s) 41, 280, 615, 717, 869
BstSCI CCNGG 5 cut(s) 39, 278, 613, 715, 867
BstUI CGCG 2 cut(s) 106, 362
BstV1I GCAGC 3 cut(s) 169, 404, 862
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 107
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 5 cut(s) 44, 109, 340, 527, 607
BtgI CCRYGG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 646, 877
BtsIMutI CAGTG 2 cut(s) 507, 608
Cac8I GCNNGC 5 cut(s) 93, 196, 259, 338, 429
CfoI GCGC 5 cut(s) 162, 248, 290, 311, 812
Cfr13I GGNCC 1 cut(s) 339
Cfr42I CCGCGG 1 cut(s) 107
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 733
CviAII CATG 3 cut(s) 46, 191, 778
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 3 cut(s) 86, 369, 636
DinI GGCGCC 2 cut(s) 289, 310
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DraI TTTAAA 1 cut(s) 897
DrdI GACNNNNNNGTC 3 cut(s) 32, 206, 583
DriI GACNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 3 cut(s) 32, 206, 583
EaeI YGGCCR 2 cut(s) 42, 107
EagI CGGCCG 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 321, 849
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 2 cut(s) 321, 849
EclXI CGGCCG 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 400
Eco52I CGGCCG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 5 cut(s) 39, 278, 613, 715, 867
EgeI GGCGCC 2 cut(s) 289, 310
EheI GGCGCC 2 cut(s) 289, 310
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 3 cut(s) 49, 194, 781
FaiI YATR 5 cut(s) 47, 192, 661, 779, 937
FaqI GGGAC 1 cut(s) 749
FatI CATG 3 cut(s) 45, 190, 777
FblI GTMKAC 1 cut(s) 69
FokI GGATG 2 cut(s) 653, 884
FspBI CTAG 2 cut(s) 623, 921
GlaI GCGC 5 cut(s) 161, 247, 289, 310, 811
GsaI CCCAGC 2 cut(s) 34, 864
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 5 cut(s) 163, 249, 291, 312, 813
HaeIII GGCC 5 cut(s) 44, 109, 340, 527, 607
HgaI GACGC 1 cut(s) 433
HhaI GCGC 5 cut(s) 162, 248, 290, 311, 812
Hin1I GRCGYC 2 cut(s) 288, 309
Hin1II CATG 3 cut(s) 49, 194, 781
Hin6I GCGC 5 cut(s) 160, 246, 288, 309, 810
HinP1I GCGC 5 cut(s) 160, 246, 288, 309, 810
HincII GTYRAC 2 cut(s) 37, 70
HindII GTYRAC 2 cut(s) 37, 70
HindIII AAGCTT 1 cut(s) 538
HinfI GANTC 3 cut(s) 239, 329, 722
HphI GGTGA 2 cut(s) 179, 731
Hpy166II GTNNAC 3 cut(s) 37, 70, 830
Hpy188I TCNGA 2 cut(s) 325, 928
Hpy188III TCNNGA 3 cut(s) 403, 574, 665
Hpy8I GTNNAC 3 cut(s) 37, 70, 830
Hpy99I CGWCG 8 cut(s) 26, 29, 56, 71, 74, 209, 212, 320
HpyAV CCTTC 4 cut(s) 140, 226, 457, 517
HpyCH4III ACNGT 2 cut(s) 511, 603
HpyCH4IV ACGT 4 cut(s) 72, 174, 181, 565
HpyCH4V TGCA 5 cut(s) 651, 673, 755, 798, 846
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 97, 106, 243, 254, 346
HpyF3I CTNAG 3 cut(s) 86, 369, 636
HpySE526I ACGT 4 cut(s) 72, 174, 181, 565
Hsp92I GRCGYC 2 cut(s) 288, 309
Hsp92II CATG 3 cut(s) 49, 194, 781
HspAI GCGC 5 cut(s) 160, 246, 288, 309, 810
KasI GGCGCC 2 cut(s) 287, 308
KspI CCGCGG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 7 cut(s) 147, 170, 282, 326, 827, 864, 929
Lsp1109I GCAGC 3 cut(s) 169, 404, 862
LweI GCATC 3 cut(s) 346, 631, 862
MaeI CTAG 2 cut(s) 623, 921
MaeII ACGT 4 cut(s) 72, 174, 181, 565
MaeIII GTNAC 2 cut(s) 125, 585
MalI GATC 1 cut(s) 367
MbiI CCGCTC 3 cut(s) 165, 274, 285
MboI GATC 1 cut(s) 365
MboII GAAGA 7 cut(s) 68, 241, 338, 391, 430, 433, 866
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 1 cut(s) 786
MluNI TGGCCA 1 cut(s) 44
Mly113I GGCGCC 2 cut(s) 288, 309
MlyI GAGTC 2 cut(s) 248, 338
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 896
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 106
MspR9I CCNGG 5 cut(s) 41, 280, 615, 717, 869
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 5 cut(s) 41, 280, 615, 717, 869
MvnI CGCG 2 cut(s) 106, 362
MwoI GCNNNNNNNGC 6 cut(s) 11, 97, 106, 243, 254, 346
NarI GGCGCC 2 cut(s) 288, 309
NdeII GATC 1 cut(s) 365
NlaIII CATG 3 cut(s) 49, 194, 781
NlaIV GGNNCC 5 cut(s) 289, 310, 322, 341, 866
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 125, 585
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 722
PflFI GACNNNGTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 278
PleI GAGTC 2 cut(s) 247, 337
PluTI GGCGCC 2 cut(s) 291, 312
PpsI GAGTC 2 cut(s) 247, 337
Psp6I CCWGG 5 cut(s) 39, 278, 613, 715, 867
PspFI CCCAGC 2 cut(s) 30, 860
PspGI CCWGG 5 cut(s) 39, 278, 613, 715, 867
PspN4I GGNNCC 5 cut(s) 289, 310, 322, 341, 866
PspPI GGNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
RseI CAYNNNNRTG 1 cut(s) 189
SacII CCGCGG 1 cut(s) 107
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 896
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 2 cut(s) 248, 338
ScrFI CCNGG 5 cut(s) 41, 280, 615, 717, 869
SfaNI GCATC 3 cut(s) 346, 631, 862
SfoI GGCGCC 2 cut(s) 289, 310
Sfr303I CCGCGG 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 107
SgrDI CGTCGACG 1 cut(s) 68
SmiI ATTTAAAT 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 3 cut(s) 541, 572, 740
SmoI CTYRAG 3 cut(s) 541, 572, 740
Sse9I AATT 1 cut(s) 786
SspDI GGCGCC 2 cut(s) 287, 308
SspMI CTAG 2 cut(s) 623, 921
StyD4I CCNGG 5 cut(s) 39, 278, 613, 715, 867
SwaI ATTTAAAT 1 cut(s) 897
TaaI ACNGT 2 cut(s) 511, 603
TaiI ACGT 4 cut(s) 75, 177, 184, 568
TaqI TCGA 3 cut(s) 69, 242, 315
TaqII GACCGA 1 cut(s) 368
TasI AATT 1 cut(s) 786
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 1 cut(s) 896
Tru9I TTAA 1 cut(s) 896
TscAI CASTG 2 cut(s) 514, 608
TseFI GTSAC 2 cut(s) 125, 585
TseI GCWGC 6 cut(s) 5, 8, 11, 157, 392, 875
Tsp45I GTSAC 2 cut(s) 125, 585
TspDTI ATGAA 5 cut(s) 62, 549, 582, 707, 782
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 2 cut(s) 514, 608
Tth111I GACNNNGTC 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 2 cut(s) 623, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.