Rmu_co8487101.1_g000001

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8487101.1
OG0006131
Physical Location & Seq
Forward (+)
543 .. 1784
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8487101.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atggctgcggcgccacccaccgaagacgtcaacgattgggtcaaactcgccatgaaagacgacgtggcggtcgtcggcgttctactcgacatcagacacgccgagccgccgccgccgccaccgtcgatgttcaagtctccagctttgaagctcgggtggagtgtgcggcagaggcgctccaagcacgtgccgcgccaccccagcgacgtcgttgttgacgtcaaaaagaagaagaaggcggcggaggagtcgaccagagccagccccaccacgccgctctcctggagcggcgccacttcggtcagcggcggcggtgcctccgaagagtccagcaagccgcctgagccgaccgacgccgcgagatctaaggtcttacgtgtggttgggtgtggtgctagtagtggttgtgcagtgtgcgagggagaaaatgattggctgaggtcggccgcactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.92

Weight (kDa)

8.84

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AatII GACGTC 3 cut(s) 30, 210, 222
AccB1I GGYRCC 3 cut(s) 10, 290, 314
AccBSI CCGCTC 2 cut(s) 277, 288
AccI GTMKAC 1 cut(s) 251
AccII CGCG 2 cut(s) 193, 359
AcoI YGGCCR 1 cut(s) 444
AcvI CACGTG 1 cut(s) 187
AcyI GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 2 cut(s) 133, 148
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 2 cut(s) 143, 151
AluI AGCT 2 cut(s) 143, 151
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 4 cut(s) 13, 177, 195, 293
AvaI CYCGRG 1 cut(s) 152
BanI GGYRCC 3 cut(s) 10, 290, 314
BbrPI CACGTG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 452
BfoI RGCGCY 3 cut(s) 14, 178, 294
BglII AGATCT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 64
BmiI GGNNCC 3 cut(s) 12, 292, 316
BmrFI CCNGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 123, 304
Bpu10I CCTNAGC 2 cut(s) 342, 437
BsaAI YACGTR 2 cut(s) 187, 377
BsaHI GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
BseBI CCWGG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 333, 428
BseRI GAGGAG 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 2 cut(s) 193, 359
Bsh1285I CGRYCG 3 cut(s) 72, 351, 447
BshFI GGCC 1 cut(s) 446
BshNI GGYRCC 3 cut(s) 10, 290, 314
BsiEI CGRYCG 3 cut(s) 72, 351, 447
BsiHKCI CYCGRG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 362
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 2 cut(s) 334, 429
BspFNI CGCG 2 cut(s) 193, 359
BspLI GGNNCC 3 cut(s) 12, 292, 316
BspT107I GGYRCC 3 cut(s) 10, 290, 314
BsrBI CCGCTC 2 cut(s) 277, 288
BssMI GATC 1 cut(s) 362
BssNI GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 123, 453
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
BstBAI YACGTR 2 cut(s) 187, 377
BstC8I GCNNGC 2 cut(s) 262, 335
BstDEI CTNAG 3 cut(s) 342, 366, 437
BstFNI CGCG 2 cut(s) 193, 359
BstH2I RGCGCY 3 cut(s) 14, 178, 294
BstHHI GCGC 4 cut(s) 13, 177, 195, 293
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 362
BstMCI CGRYCG 3 cut(s) 72, 351, 447
BstMWI GCNNNNNNNGC 7 cut(s) 112, 115, 172, 181, 190, 201, 343
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 452
BstUI CGCG 2 cut(s) 193, 359
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 1 cut(s) 446
BtrI CACGTC 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 417, 449
Cac8I GCNNGC 2 cut(s) 262, 335
CfoI GCGC 4 cut(s) 13, 177, 195, 293
CseI GACGC 1 cut(s) 362
CviAII CATG 1 cut(s) 52
DdeI CTNAG 3 cut(s) 342, 366, 437
DinI GGCGCC 2 cut(s) 12, 292
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 444
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 444
Eco52I CGGCCG 1 cut(s) 444
Eco72I CACGTG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 281
EgeI GGCGCC 2 cut(s) 12, 292
EheI GGCGCC 2 cut(s) 12, 292
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 251
FspBI CTAG 1 cut(s) 396
GlaI GCGC 4 cut(s) 12, 176, 194, 292
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 2 cut(s) 123, 304
HaeII RGCGCY 3 cut(s) 14, 178, 294
HaeIII GGCC 1 cut(s) 446
HgaI GACGC 1 cut(s) 362
HhaI GCGC 4 cut(s) 13, 177, 195, 293
Hin1I GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 4 cut(s) 11, 175, 193, 291
HinP1I GCGC 4 cut(s) 11, 175, 193, 291
HincII GTYRAC 3 cut(s) 31, 217, 252
HindII GTYRAC 3 cut(s) 31, 217, 252
HinfI GANTC 2 cut(s) 248, 326
Hpy166II GTNNAC 3 cut(s) 31, 217, 252
Hpy188I TCNGA 2 cut(s) 95, 322
Hpy8I GTNNAC 3 cut(s) 31, 217, 252
Hpy99I CGWCG 6 cut(s) 65, 77, 127, 209, 212, 356
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 123, 453
HpyCH4IV ACGT 6 cut(s) 27, 63, 186, 207, 219, 376
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 7 cut(s) 112, 115, 172, 181, 190, 201, 343
HpyF3I CTNAG 3 cut(s) 342, 366, 437
HpySE526I ACGT 6 cut(s) 27, 63, 186, 207, 219, 376
Hsp92I GRCGYC 6 cut(s) 11, 27, 207, 219, 291, 354
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 4 cut(s) 11, 175, 193, 291
KasI GGCGCC 2 cut(s) 10, 290
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 182, 285
LpnPI CCDG 8 cut(s) 153, 214, 268, 268, 274, 295, 343, 354
MaeI CTAG 1 cut(s) 396
MaeII ACGT 6 cut(s) 27, 63, 186, 207, 219, 376
MalI GATC 1 cut(s) 364
MbiI CCGCTC 2 cut(s) 277, 288
MboI GATC 1 cut(s) 362
MboII GAAGA 4 cut(s) 35, 241, 244, 335
MflI RGATCY 1 cut(s) 362
Mly113I GGCGCC 2 cut(s) 11, 291
MlyI GAGTC 2 cut(s) 257, 335
MnlI CCTC 5 cut(s) 165, 238, 328, 412, 432
MspA1I CMGCKG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 193, 359
MwoI GCNNNNNNNGC 7 cut(s) 112, 115, 172, 181, 190, 201, 343
NarI GGCGCC 2 cut(s) 11, 291
NdeII GATC 1 cut(s) 362
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 12, 292, 316
NmeAIII GCCGAG 1 cut(s) 127
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 216
PfoI TCCNGGA 1 cut(s) 281
PleI GAGTC 2 cut(s) 256, 334
PluTI GGCGCC 2 cut(s) 14, 294
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 2 cut(s) 256, 334
Ppu21I YACGTR 2 cut(s) 187, 377
Psp6I CCWGG 1 cut(s) 281
PspCI CACGTG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 3 cut(s) 12, 292, 316
PsuI RGATCY 1 cut(s) 362
SalI GTCGAC 1 cut(s) 250
Sau3AI GATC 1 cut(s) 362
SchI GAGTC 2 cut(s) 257, 335
ScrFI CCNGG 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 452
SfoI GGCGCC 2 cut(s) 12, 292
SspDI GGCGCC 2 cut(s) 10, 290
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 123, 453
TaiI ACGT 6 cut(s) 30, 66, 189, 210, 222, 379
TaqI TCGA 3 cut(s) 87, 125, 251
TaqII GACCGA 2 cut(s) 289, 365
TscAI CASTG 2 cut(s) 417, 456
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 2 cut(s) 417, 456
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 1 cut(s) 396
ZraI GACGTC 3 cut(s) 28, 208, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.