Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

54142631 .. 54146754

Gene Structure 4124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG365500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATGGCTGCGGCGCCACCCACCGAAGACGTCAACGATTGGGTCAAACTCGCCATGAAAGACGACGTGGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCCGCCGCCACCGTCGATGTTCAAGTCTCCAGCTTTGAAGCTCGGGTGGAGCGTGCGGCAGAGGCGCTCCAAGCACGTGCCGCGCCACCCAAGCGACGTCGTTGTTGACGTCAAAAAGAAGAAGAAGGCGGCGGAGGAGTCGACCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCCGCCTGAGCCGACCGACGCCGCGAGATCTAAGGTTGCTGTTACAAGTTGCACGACCATCTCCAAGAGGCCGAGAAAGAGGAAGACATTAGCTCAACTTAAAGAGGAGGAGAGTCTTCTATTGAAGGAAAGACGCAATTTGAAAAAGGAACTGCTAAACCTACGCCTTAATGTCGAGAAGCAGAGGACCACAAATGAAAGCTTGAAAAGAATAAAGCTGCAGCAAACAATGATGAAAGTTGCCTCTTCCTCTGCATCGGGTGAAGCCATTTCTTATCAACCAGCACAAGTAAATGCAGTTAGTGAACTTACTAGAATCATTGATCTTGGCACTTCACAGAGTTCCTGTCCATCCAACATTTCTTGCATGGTACACGAAGTTGAGAACTGCCATGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAACTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.52

Weight (kDa)

9.16

Isoelectric Point (pI)

68.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	3 cut(s)	33, 213, 225
AccB1I	GGYRCC	3 cut(s)	13, 293, 317
AccBSI	CCGCTC	2 cut(s)	280, 291
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	2 cut(s)	196, 362
AclWI	GGATC	1 cut(s)	762
AcvI	CACGTG	1 cut(s)	190
AcyI	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
AfaI	GTAC	1 cut(s)	711
AgsI	TTSAA	6 cut(s)	136, 151, 463, 481, 544, 773
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	146, 154, 431, 540, 556, 737, 810
AluI	AGCT	7 cut(s)	146, 154, 431, 540, 556, 737, 810
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	762
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	4 cut(s)	8, 556, 559, 737
AspLEI	GCGC	4 cut(s)	16, 180, 198, 296
AspS9I	GGNCC	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	525
BanI	GGYRCC	3 cut(s)	13, 293, 317
BbrPI	CACGTG	1 cut(s)	190
BbsI	GAAGAC	3 cut(s)	33, 428, 446
BbvI	GCAGC	3 cut(s)	543, 571, 724
BccI	CCATC	2 cut(s)	404, 697
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	557
BfoI	RGCGCY	3 cut(s)	17, 181, 297
BglII	AGATCT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	3 cut(s)	15, 295, 319
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	3 cut(s)	33, 428, 446
BpmI	CTGGAG	2 cut(s)	126, 307
Bpu10I	CCTNAGC	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
BsaJI	CCNNGG	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	1 cut(s)	689
BseJI	GATNNNNATC	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	3 cut(s)	263, 458, 461
BseXI	GCAGC	3 cut(s)	543, 571, 724
Bsh1236I	CGCG	2 cut(s)	196, 362
Bsh1285I	CGRYCG	2 cut(s)	75, 354
BshFI	GGCC	1 cut(s)	409
BshNI	GGYRCC	3 cut(s)	13, 293, 317
BsiEI	CGRYCG	2 cut(s)	75, 354
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	752
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	365, 661, 754, 778
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	196, 362
BspLI	GGNNCC	3 cut(s)	15, 295, 319
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	1 cut(s)	762
BspT107I	GGYRCC	3 cut(s)	13, 293, 317
BsrBI	CCGCTC	2 cut(s)	280, 291
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	4 cut(s)	365, 661, 754, 778
BssNI	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	321, 589
BstACI	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	167, 265, 338
BstDEI	CTNAG	2 cut(s)	345, 369
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	2 cut(s)	196, 362
BstH2I	RGCGCY	3 cut(s)	17, 181, 297
BstHHI	GCGC	4 cut(s)	16, 180, 198, 296
BstKTI	GATC	4 cut(s)	368, 664, 757, 781
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	365, 661, 754, 778
BstMCI	CGRYCG	2 cut(s)	75, 354
BstMWI	GCNNNNNNNGC	7 cut(s)	115, 118, 175, 184, 193, 204, 346
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	557
BstUI	CGCG	2 cut(s)	196, 362
BstV1I	GCAGC	3 cut(s)	543, 571, 724
BstV2I	GAAGAC	3 cut(s)	33, 428, 446
BstX2I	RGATCY	2 cut(s)	365, 754
BstYI	RGATCY	2 cut(s)	365, 754
BsuRI	GGCC	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	689
Cac8I	GCNNGC	3 cut(s)	167, 265, 338
CfoI	GCGC	4 cut(s)	16, 180, 198, 296
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	2 cut(s)	365, 480
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	3 cut(s)	55, 706, 731
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	2 cut(s)	345, 369
DinI	GGCGCC	2 cut(s)	15, 295
DpnI	GATC	4 cut(s)	367, 663, 756, 780
DpnII	GATC	4 cut(s)	365, 661, 754, 778
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	321, 589
EarI	CTCTTC	2 cut(s)	321, 589
EciI	GGCGGA	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	525
Eco72I	CACGTG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	284
EgeI	GGCGCC	2 cut(s)	15, 295
EheI	GGCGCC	2 cut(s)	15, 295
FaeI	CATG	3 cut(s)	58, 709, 734
FaiI	YATR	4 cut(s)	56, 707, 732, 799
FatI	CATG	3 cut(s)	54, 705, 730
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	254
FokI	GGATG	1 cut(s)	676
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	4 cut(s)	15, 179, 197, 295
GsuI	CTGGAG	2 cut(s)	126, 307
HaeII	RGCGCY	3 cut(s)	17, 181, 297
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	2 cut(s)	365, 480
HhaI	GCGC	4 cut(s)	16, 180, 198, 296
Hin1I	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
Hin1II	CATG	3 cut(s)	58, 709, 734
Hin6I	GCGC	4 cut(s)	14, 178, 196, 294
HinP1I	GCGC	4 cut(s)	14, 178, 196, 294
HincII	GTYRAC	3 cut(s)	34, 220, 255
HindII	GTYRAC	3 cut(s)	34, 220, 255
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	4 cut(s)	251, 329, 451, 654
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	5 cut(s)	34, 220, 255, 644, 712
Hpy188I	TCNGA	3 cut(s)	98, 325, 790
Hpy188III	TCNNGA	2 cut(s)	514, 773
Hpy8I	GTNNAC	5 cut(s)	34, 220, 255, 644, 712
Hpy99I	CGWCG	6 cut(s)	68, 80, 130, 212, 215, 359
HpyAV	CCTTC	2 cut(s)	232, 457
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	5 cut(s)	30, 66, 189, 210, 222
HpyCH4V	TGCA	5 cut(s)	390, 559, 593, 635, 705
HpyF10VI	GCNNNNNNNGC	7 cut(s)	115, 118, 175, 184, 193, 204, 346
HpyF3I	CTNAG	2 cut(s)	345, 369
HpySE526I	ACGT	5 cut(s)	30, 66, 189, 210, 222
Hsp92I	GRCGYC	6 cut(s)	14, 30, 210, 222, 294, 357
Hsp92II	CATG	3 cut(s)	58, 709, 734
HspAI	GCGC	4 cut(s)	14, 178, 196, 294
KasI	GGCGCC	2 cut(s)	13, 293
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	4 cut(s)	365, 661, 754, 778
LmnI	GCTCC	3 cut(s)	162, 185, 288
Lsp1109I	GCAGC	3 cut(s)	543, 571, 724
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	5 cut(s)	30, 66, 189, 210, 222
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	4 cut(s)	367, 663, 756, 780
MbiI	CCGCTC	2 cut(s)	280, 291
MboI	GATC	4 cut(s)	365, 661, 754, 778
MboII	GAAGA	8 cut(s)	38, 244, 247, 338, 433, 446, 576, 755
MflI	RGATCY	2 cut(s)	365, 754
MluCI	AATT	1 cut(s)	475
Mly113I	GGCGCC	2 cut(s)	14, 294
MlyI	GAGTC	3 cut(s)	260, 338, 460
MmeI	TCCRAC	1 cut(s)	717
MseI	TTAA	2 cut(s)	438, 507
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	2 cut(s)	196, 362
MwoI	GCNNNNNNNGC	7 cut(s)	115, 118, 175, 184, 193, 204, 346
NarI	GGCGCC	2 cut(s)	14, 294
NdeII	GATC	4 cut(s)	365, 661, 754, 778
NlaIII	CATG	3 cut(s)	58, 709, 734
NlaIV	GGNNCC	3 cut(s)	15, 295, 319
NmeAIII	GCCGAG	2 cut(s)	130, 435
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 162, 219
PfeI	GAWTC	1 cut(s)	654
PfoI	TCCNGGA	1 cut(s)	284
PleI	GAGTC	3 cut(s)	259, 337, 459
PluTI	GGCGCC	2 cut(s)	17, 297
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	3 cut(s)	259, 337, 459
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	15, 295, 319
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	365, 754
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
SalI	GTCGAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	438, 507
Sau3AI	GATC	4 cut(s)	365, 661, 754, 778
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	3 cut(s)	260, 338, 460
ScrFI	CCNGG	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	1 cut(s)	557
SfoI	GGCGCC	2 cut(s)	15, 295
SinI	GGWCC	1 cut(s)	525
Sse9I	AATT	1 cut(s)	475
SspDI	GGCGCC	2 cut(s)	13, 293
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	5 cut(s)	33, 69, 192, 213, 225
TaqI	TCGA	4 cut(s)	90, 128, 254, 513
TaqII	GACCGA	2 cut(s)	292, 368
TasI	AATT	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	2 cut(s)	438, 507
Tru9I	TTAA	2 cut(s)	438, 507
TseI	GCWGC	4 cut(s)	8, 556, 559, 737
TspDTI	ATGAA	4 cut(s)	71, 549, 587, 747
VpaK11BI	GGWCC	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	1 cut(s)	651
ZraI	GACGTC	3 cut(s)	31, 211, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.