Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

30300714 .. 30304428

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCCGGCGAAAACTGGATTCGAGTGGCCATGTCTGACGATTCCATGGTGGCGGAGGCGCTTCTTCGGCTCCGCCACTCCGAACCGAAGAATAGAGTCGACGCGTCCCCTCTCAAGCTGAAATGGAGCGTGCGTCAACGGAGATCGAAGAAAGGAGACCAGACGCGAGCAAGCCCCACCACACCGCTTTCCTGGAGCGGTGCCACGTCTCTTAGCGGCGGAGGCGGCAGCGGTGGAAGCGGCGCCGGTGCTACCACCATGGAAGGCCTCGAGGAGTCTAGCGCCGCCGTAAAACCCTCTGAGCCATTTAGATCTAAGATTTCTCAAACGAGTGCAATAACAACAACAACAACAACAACCCTTTTCAAGAGATCAAGAAAGAAGAAGACTTTGGCTGAGCTTAAAGAGGAAGAGATCATGCTCTTGAAGGAAAGTAACGGCCTGAAAAATGAATTGGCAAATATGCGCGATTTGCTCGAGCAACAAAGAGCAAGAAACACTGCTCTAAAGAAGATGAAGGCTGAATCACAATCTGCCTTATCGTGCAAACTCACTTTCGAACAAGGTTCTTCCTTCTTGCTCCCTGACCTAAACATGCCTCTAGATAACGACCCGAGCCCTGAAGTTGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.97

Weight (kDa)

9.51

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	200, 242
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	3 cut(s)	104, 166, 468
AcoI	YGGCCR	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	367, 427
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 437, 469
AluBI	AGCT	2 cut(s)	118, 400
AluI	AGCT	2 cut(s)	118, 400
Alw26I	GTCTC	2 cut(s)	150, 213
Ama87I	CYCGRG	3 cut(s)	269, 476, 613
AoxI	GGCC	3 cut(s)	27, 265, 439
ApeKI	GCWGC	1 cut(s)	228
AspLEI	GCGC	4 cut(s)	61, 245, 284, 468
AsuII	TTCGAA	1 cut(s)	558
AvaI	CYCGRG	3 cut(s)	269, 476, 613
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	200, 242
BanII	GRGCYC	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	240
BceAI	ACGGC	2 cut(s)	272, 454
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	150, 213
BfaI	CTAG	2 cut(s)	279, 602
BfoI	RGCGCY	3 cut(s)	62, 246, 285
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	5 cut(s)	217, 226, 229, 241, 285
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	218, 227, 230, 242, 286
Bme1390I	CCNGG	1 cut(s)	193
BmeT110I	CYCGRG	3 cut(s)	269, 476, 613
BmgBI	CACGTC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	71, 202, 244
BmrFI	CCNGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	214
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	45, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	45, 258
BseMII	CTCAG	2 cut(s)	291, 387
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	3 cut(s)	104, 166, 468
BshFI	GGCC	3 cut(s)	29, 267, 441
BshNI	GGYRCC	2 cut(s)	200, 242
BsiHKCI	CYCGRG	3 cut(s)	269, 476, 613
BsiSI	CCGG	2 cut(s)	6, 246
BslFI	GGGAC	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	150, 213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	29, 267, 441
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	3 cut(s)	269, 476, 613
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp143I	GATC	4 cut(s)	143, 311, 371, 414
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	2 cut(s)	45, 258
BspANI	GGCC	3 cut(s)	29, 267, 441
BspCNI	CTCAG	2 cut(s)	292, 388
BspFNI	CGCG	3 cut(s)	104, 166, 468
BspLI	GGNNCC	3 cut(s)	71, 202, 244
BspT104I	TTCGAA	1 cut(s)	558
BspT107I	GGYRCC	2 cut(s)	200, 242
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	45, 258
BssMI	GATC	4 cut(s)	143, 311, 371, 414
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	45, 258
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	131, 168, 172
BstDEI	CTNAG	4 cut(s)	212, 300, 315, 396
BstDSI	CCRYGG	2 cut(s)	45, 258
BstFNI	CGCG	3 cut(s)	104, 166, 468
BstH2I	RGCGCY	3 cut(s)	62, 246, 285
BstHHI	GCGC	4 cut(s)	61, 245, 284, 468
BstKTI	GATC	4 cut(s)	146, 314, 374, 417
BstMAI	GTCTC	2 cut(s)	150, 213
BstMBI	GATC	4 cut(s)	143, 311, 371, 414
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 222, 225, 237, 472
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	3 cut(s)	104, 166, 468
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	29, 267, 441
BtgI	CCRYGG	2 cut(s)	45, 258
BtrI	CACGTC	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	3 cut(s)	131, 168, 172
CfoI	GCGC	4 cut(s)	61, 245, 284, 468
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	4 cut(s)	93, 110, 122, 172
CviAII	CATG	5 cut(s)	31, 46, 259, 418, 595
DdeI	CTNAG	4 cut(s)	212, 300, 315, 396
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	4 cut(s)	145, 313, 373, 416
DpnII	GATC	4 cut(s)	143, 311, 371, 414
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	3 cut(s)	62, 68, 234
Eco130I	CCWWGG	2 cut(s)	45, 258
Eco147I	AGGCCT	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	150
Eco88I	CYCGRG	3 cut(s)	269, 476, 613
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	45, 258
EcoT38I	GRGCYC	1 cut(s)	620
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	45, 258
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	5 cut(s)	34, 49, 262, 421, 598
FaiI	YATR	6 cut(s)	32, 47, 260, 419, 464, 596
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	5 cut(s)	30, 45, 258, 417, 594
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	217, 226, 229, 241, 285
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	5 cut(s)	217, 226, 229, 241, 285
FspBI	CTAG	2 cut(s)	279, 602
GlaI	GCGC	4 cut(s)	60, 244, 283, 467
GluI	GCNGC	5 cut(s)	217, 226, 229, 241, 285
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	3 cut(s)	62, 246, 285
HaeIII	GGCC	3 cut(s)	29, 267, 441
HapII	CCGG	2 cut(s)	6, 246
HgaI	GACGC	4 cut(s)	93, 110, 122, 172
HhaI	GCGC	4 cut(s)	61, 245, 284, 468
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	34, 49, 262, 421, 598
Hin6I	GCGC	4 cut(s)	59, 243, 282, 466
HinP1I	GCGC	4 cut(s)	59, 243, 282, 466
HincII	GTYRAC	2 cut(s)	100, 137
HindII	GTYRAC	2 cut(s)	100, 137
HinfI	GANTC	5 cut(s)	19, 41, 96, 275, 524
HpaII	CCGG	2 cut(s)	6, 246
Hpy166II	GTNNAC	2 cut(s)	100, 137
Hpy188I	TCNGA	3 cut(s)	37, 82, 301
Hpy188III	TCNNGA	4 cut(s)	367, 375, 424, 602
Hpy8I	GTNNAC	2 cut(s)	100, 137
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	257, 421, 511, 583
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	335, 546
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 222, 225, 237, 472
HpyF3I	CTNAG	4 cut(s)	212, 300, 315, 396
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	34, 49, 262, 421, 598
HspAI	GCGC	4 cut(s)	59, 243, 282, 466
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	4 cut(s)	143, 311, 371, 414
LmnI	GCTCC	4 cut(s)	75, 126, 195, 585
LpnPI	CCDG	7 cut(s)	19, 173, 178, 205, 259, 455, 597
Lsp1109I	GCAGC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	279, 602
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	145, 313, 373, 416
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	4 cut(s)	143, 311, 371, 414
MboII	GAAGA	8 cut(s)	56, 100, 160, 394, 397, 422, 523, 561
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	1 cut(s)	452
MluI	ACGCGT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	29
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	105, 284
MnlI	CCTC	8 cut(s)	49, 120, 215, 265, 278, 307, 400, 609
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	6, 246
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	3 cut(s)	104, 166, 468
MwoI	GCNNNNNNNGC	5 cut(s)	67, 222, 225, 237, 472
NarI	GGCGCC	1 cut(s)	243
NcoI	CCATGG	2 cut(s)	45, 258
NdeII	GATC	4 cut(s)	143, 311, 371, 414
NlaIII	CATG	5 cut(s)	34, 49, 262, 421, 598
NlaIV	GGNNCC	3 cut(s)	71, 202, 244
NspI	RCATGY	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	558
PaeR7I	CTCGAG	2 cut(s)	269, 476
PceI	AGGCCT	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	19, 41, 524
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	218, 227, 230, 242, 286
PleI	GAGTC	2 cut(s)	104, 283
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	104, 283
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	71, 202, 244
PspXI	VCTCGAGB	2 cut(s)	269, 476
PsuI	RGATCY	1 cut(s)	311
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	5 cut(s)	217, 226, 229, 241, 285
Sau3AI	GATC	4 cut(s)	143, 311, 371, 414
SchI	GAGTC	2 cut(s)	105, 284
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	620
SetI	ASST	5 cut(s)	120, 209, 402, 568, 591
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	2 cut(s)	269, 476
SfuI	TTCGAA	1 cut(s)	558
SgrAI	CRCCGGYG	1 cut(s)	245
SlaI	CTCGAG	2 cut(s)	269, 476
SmlI	CTYRAG	3 cut(s)	113, 269, 476
SmoI	CTYRAG	3 cut(s)	113, 269, 476
Sse9I	AATT	1 cut(s)	452
SseBI	AGGCCT	1 cut(s)	267
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	279, 602
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	45, 258
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	6 cut(s)	22, 99, 146, 270, 477, 558
TasI	AATT	1 cut(s)	452
TauI	GCSGC	4 cut(s)	219, 228, 243, 287
TfiI	GAWTC	3 cut(s)	19, 41, 524
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	465, 530
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	1 cut(s)	598
XhoI	CTCGAG	2 cut(s)	269, 476
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	279, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.