Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

26428602 .. 26433967

Gene Structure 5366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1223300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTTCCCCTGCTGACGACGGTCAAGACGGCTGGGTCAAGCTCGCCATGAATGACGAGGCGGCGGTCGTCGACCTTCTTCTCCGCCTCAAGCACGCCGCGCCGCCTTCGCCGTCGAAGCGCAGTAGTACTCACGGCTTTCCGACTTTGCGGTGGAGCGTAAGGCAGCGCCGTTCCAGGAACGTGCCACGTAACCATCATGCCGACGACGTCGCTGCCGAGGGAAGAAAGAGCAAGAAGGGTGAGTCGAGCGGCGCCAGGGCCAGCCCCACCACGCCTCTTTCATGGAACGGGGCCACTTCGGTTAGCGGCGGCGGTGGCTGCGTCGACGGTTCAGAAGAATCCAGCAAGCCGCTTAAGCCGACCGATACCGCGAGATCTAAGGTTGCTGTTAGAAGTGAATTAACCATCTTCAAGAGGCCAAGAAAGAAGAAGACGTTAGCTGAATTAAAAGAGGAGGAAAGTCTGCTGTTGAAGGAAAGAAGAAATTTGAAAAATGAATTGGCAGTGCTACGCCTCACCGTTGAGAAGCAAAGGGCCACAAATGAAAGCTTGAAAAAAGTGAAGCTTGAGTTGCAATTGCCGCAGACAAAAATGAAAGCTACGACACTTGTACTGTCTGGTGAAGCCATTTGGCAACAAAATGAGCAAATAAATGCAGTTGGCTACACTACTCCGATAATGACAACAAGTGCTCATTGCAATAACGCTGGCACTTCACAAAGCTCCTGTCCTTCAAATGTTTCTTCCAAGGGACAACAAGAGGTTGGGAGCCGAGACACTGCCTTTTCACTACCTGATCTGAACCTTCCATTTGGAGAGGACTCTAGCTCTGAGGTTTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.66

Weight (kDa)

9.55

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	254
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	72, 327
AccII	CGCG	2 cut(s)	101, 374
AcsI	RAATTY	1 cut(s)	487
AcyI	GRCGYC	2 cut(s)	210, 255
AfaI	GTAC	2 cut(s)	130, 615
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	5 cut(s)	415, 475, 493, 556, 738
AjnI	CCWGG	2 cut(s)	176, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	7 cut(s)	43, 443, 552, 568, 602, 726, 831
AluI	AGCT	7 cut(s)	43, 443, 552, 568, 602, 726, 831
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	771
AoxI	GGCC	4 cut(s)	261, 294, 419, 537
ApeKI	GCWGC	3 cut(s)	166, 215, 321
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
AspLEI	GCGC	4 cut(s)	103, 123, 171, 257
AspS9I	GGNCC	3 cut(s)	261, 294, 537
AsuHPI	GGTGA	3 cut(s)	254, 511, 635
BanI	GGYRCC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	3 cut(s)	178, 202, 308
BccI	CCATC	2 cut(s)	204, 416
BceAI	ACGGC	4 cut(s)	46, 97, 151, 156
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	178, 259
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	1 cut(s)	828
BfoI	RGCGCY	2 cut(s)	172, 258
BfrI	CTTAAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	377
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	178, 259
BmgT120I	GGNCC	3 cut(s)	261, 294, 537
BmiI	GGNNCC	3 cut(s)	256, 295, 773
BmrFI	CCNGG	2 cut(s)	178, 259
BoxI	GACNNNNGTC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	74, 590
BsaAI	YACGTR	1 cut(s)	191
BsaHI	GRCGYC	2 cut(s)	210, 255
BsaJI	CCNNGG	3 cut(s)	219, 258, 750
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	2 cut(s)	178, 259
BseDI	CCNNGG	3 cut(s)	219, 258, 750
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	825
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	178, 202, 308
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	101, 374
Bsh1285I	CGRYCG	2 cut(s)	69, 366
BshFI	GGCC	4 cut(s)	263, 296, 421, 539
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	2 cut(s)	69, 366
BsiHKAI	GWGCWC	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	768
BsnI	GGCC	4 cut(s)	263, 296, 421, 539
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	2 cut(s)	377, 799
BspANI	GGCC	4 cut(s)	263, 296, 421, 539
BspCNI	CTCAG	1 cut(s)	826
BspFNI	CGCG	2 cut(s)	101, 374
BspLI	GGNNCC	3 cut(s)	256, 295, 773
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	219, 258, 750
BssMI	GATC	2 cut(s)	377, 799
BssNI	GRCGYC	2 cut(s)	210, 255
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	178, 259
Bst4CI	ACNGT	4 cut(s)	23, 332, 523, 618
BstACI	GRCGYC	2 cut(s)	210, 255
BstAFI	CTTAAG	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	5 cut(s)	45, 96, 265, 350, 712
BstDEI	CTNAG	2 cut(s)	381, 834
BstFNI	CGCG	2 cut(s)	101, 374
BstH2I	RGCGCY	2 cut(s)	172, 258
BstHHI	GCGC	4 cut(s)	103, 123, 171, 257
BstKTI	GATC	2 cut(s)	380, 802
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	2 cut(s)	377, 799
BstMCI	CGRYCG	2 cut(s)	69, 366
BstMWI	GCNNNNNNNGC	8 cut(s)	100, 109, 118, 318, 321, 358, 574, 583
BstNI	CCWGG	2 cut(s)	178, 259
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	176, 257
BstUI	CGCG	2 cut(s)	101, 374
BstV1I	GCAGC	3 cut(s)	178, 202, 308
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	4 cut(s)	263, 296, 421, 539
BtsI	GCAGTG	2 cut(s)	513, 780
BtsIMutI	CAGTG	2 cut(s)	513, 780
Cac8I	GCNNGC	5 cut(s)	45, 96, 265, 350, 712
CfoI	GCGC	4 cut(s)	103, 123, 171, 257
Cfr13I	GGNCC	3 cut(s)	261, 294, 537
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	129, 614
CviAII	CATG	3 cut(s)	49, 200, 285
CviQI	GTAC	2 cut(s)	129, 614
DdeI	CTNAG	2 cut(s)	381, 834
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	2 cut(s)	379, 801
DpnII	GATC	2 cut(s)	377, 799
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	750
EcoRII	CCWGG	2 cut(s)	176, 257
EcoT14I	CCWWGG	1 cut(s)	750
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	3 cut(s)	52, 203, 288
FaiI	YATR	4 cut(s)	50, 201, 286, 844
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	3 cut(s)	48, 199, 284
FblI	GTMKAC	2 cut(s)	72, 327
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	4 cut(s)	102, 122, 170, 256
GsaI	CCCAGC	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	172, 258
HaeIII	GGCC	4 cut(s)	263, 296, 421, 539
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	4 cut(s)	103, 123, 171, 257
Hin1I	GRCGYC	2 cut(s)	210, 255
Hin1II	CATG	3 cut(s)	52, 203, 288
Hin6I	GCGC	4 cut(s)	101, 121, 169, 255
HinP1I	GCGC	4 cut(s)	101, 121, 169, 255
HincII	GTYRAC	2 cut(s)	73, 328
HindII	GTYRAC	2 cut(s)	73, 328
HindIII	AAGCTT	2 cut(s)	550, 566
HinfI	GANTC	3 cut(s)	245, 341, 824
HphI	GGTGA	3 cut(s)	254, 511, 635
Hpy166II	GTNNAC	2 cut(s)	73, 328
Hpy188I	TCNGA	5 cut(s)	144, 337, 678, 804, 835
Hpy188III	TCNNGA	2 cut(s)	26, 415
Hpy8I	GTNNAC	2 cut(s)	73, 328
Hpy99I	CGWCG	8 cut(s)	23, 74, 118, 209, 212, 215, 329, 332
HpyAV	CCTTC	6 cut(s)	86, 117, 232, 469, 744, 818
HpyCH4III	ACNGT	4 cut(s)	23, 332, 523, 618
HpyCH4IV	ACGT	4 cut(s)	183, 190, 210, 437
HpyCH4V	TGCA	3 cut(s)	577, 659, 702
HpyF10VI	GCNNNNNNNGC	8 cut(s)	100, 109, 118, 318, 321, 358, 574, 583
HpyF3I	CTNAG	2 cut(s)	381, 834
HpySE526I	ACGT	4 cut(s)	183, 190, 210, 437
Hsp92I	GRCGYC	2 cut(s)	210, 255
Hsp92II	CATG	3 cut(s)	52, 203, 288
HspAI	GCGC	4 cut(s)	101, 121, 169, 255
KasI	GGCGCC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	377, 799
LmnI	GCTCC	3 cut(s)	156, 731, 771
Lsp1109I	GCAGC	3 cut(s)	178, 202, 308
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	4 cut(s)	183, 190, 210, 437
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	379, 801
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	2 cut(s)	377, 799
MboII	GAAGA	8 cut(s)	71, 237, 350, 403, 442, 445, 495, 738
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	5 cut(s)	401, 446, 487, 500, 578
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	254, 818
MmeI	TCCRAC	1 cut(s)	167
MseI	TTAA	3 cut(s)	357, 404, 449
MspCI	CTTAAG	1 cut(s)	356
MspR9I	CCNGG	2 cut(s)	178, 259
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	2 cut(s)	178, 259
MvnI	CGCG	2 cut(s)	101, 374
MwoI	GCNNNNNNNGC	8 cut(s)	100, 109, 118, 318, 321, 358, 574, 583
NarI	GGCGCC	1 cut(s)	255
NdeII	GATC	2 cut(s)	377, 799
NlaIII	CATG	3 cut(s)	52, 203, 288
NlaIV	GGNNCC	3 cut(s)	256, 295, 773
NmeAIII	GCCGAG	2 cut(s)	244, 800
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	176
PleI	GAGTC	2 cut(s)	253, 818
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	2 cut(s)	253, 818
Ppu21I	YACGTR	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	176, 257
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	2 cut(s)	176, 257
PspN4I	GGNNCC	3 cut(s)	256, 295, 773
PspPI	GGNCC	3 cut(s)	261, 294, 537
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	130, 615
RsaNI	GTAC	2 cut(s)	129, 614
SalI	GTCGAC	2 cut(s)	71, 326
SaqAI	TTAA	3 cut(s)	357, 404, 449
Sau3AI	GATC	2 cut(s)	377, 799
Sau96I	GGNCC	3 cut(s)	261, 294, 537
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	2 cut(s)	254, 818
ScrFI	CCNGG	2 cut(s)	178, 259
SduI	GDGCHC	1 cut(s)	697
SfoI	GGCGCC	1 cut(s)	256
SgrDI	CGTCGACG	1 cut(s)	326
SmlI	CTYRAG	3 cut(s)	89, 356, 569
SmoI	CTYRAG	3 cut(s)	89, 356, 569
Sse9I	AATT	5 cut(s)	401, 446, 487, 500, 578
SspDI	GGCGCC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	176, 257
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	4 cut(s)	23, 332, 523, 618
TaiI	ACGT	4 cut(s)	186, 193, 213, 440
TaqI	TCGA	4 cut(s)	72, 116, 248, 327
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	5 cut(s)	401, 446, 487, 500, 578
TatI	WGTACW	2 cut(s)	128, 613
TauI	GCSGC	8 cut(s)	65, 101, 106, 255, 312, 315, 355, 586
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	357, 404, 449
Tru9I	TTAA	3 cut(s)	357, 404, 449
TscAI	CASTG	2 cut(s)	513, 787
TseI	GCWGC	3 cut(s)	166, 215, 321
TspDTI	ATGAA	5 cut(s)	65, 273, 513, 561, 611
TspRI	CASTG	2 cut(s)	513, 787
Tth111I	GACNNNGTC	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	487
XmiI	GTMKAC	2 cut(s)	72, 327
XspI	CTAG	1 cut(s)	828
ZraI	GACGTC	1 cut(s)	211
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.