Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

35531217 .. 35536153

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGGCTGCGGCGCCACCCACCGAAGACGTCAACGATTGGGTCAAACTCGCCATGAAAGACGACGTCGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCGGGCAACGTCGATGTTCAAGTCTCCAGCTTTGAAGCTCGAGTGGAGCGTGCGGCAGAGGCGCTCCAAGCACGTGCCGCGCCACCCAAGCGATGTCGTTGTTGACGTCAAAAAGAAGAAGAAGAAGGCGGCGGAGGAGGAATCGACCAGAGGCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCCGCCTGAGCCGACCGACGCCGCGAGATCTAAGACATTAGCTCAACTTAAAGAGGAGGAGAGTCTTCTATTGAAGGAAAGACGCAATTTGAAAAAGGTACTAGTCCTTGAGAAATTATATCTACCTACCTATATTCTTCTTTGTCTTCCTAATACATCTGAGTGGAGATGCCTGAATATTGATTTCTTTTATGCATCCTCTGTGCAGGAACTGCTAAACCTACGCCTCAATGTCGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAGAATAAAGCTGCAGCAAACAATGATGAAAGTTGCATCTTCTTCTGCATCGGGTGAAGCCATTTCGTATCAACCTGCACAAGTAAATGCAGTTAGTGAACTAACTAGAATCATTGATCTTGGCACCTCACAGGGTTCCTGTCCATCCAACATGTCTTACATGGTACATGAAGTTGGGAACTGCCACGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAGCTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.13

Weight (kDa)

7.64

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	3 cut(s)	33, 69, 222
Acc36I	ACCTGC	1 cut(s)	691
AccB1I	GGYRCC	4 cut(s)	13, 296, 320, 731
AccBSI	CCGCTC	2 cut(s)	283, 294
AccII	CGCG	4 cut(s)	71, 115, 193, 365
AclWI	GGATC	1 cut(s)	825
AcvI	CACGTG	1 cut(s)	187
AcyI	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
AfaI	GTAC	2 cut(s)	441, 774
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	6 cut(s)	133, 148, 415, 433, 607, 836
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	8 cut(s)	143, 151, 383, 603, 619, 800, 849, 873
AluI	AGCT	8 cut(s)	143, 151, 383, 603, 619, 800, 849, 873
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	825
AlwNI	CAGNNNCTG	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	5 cut(s)	8, 267, 619, 622, 800
AspLEI	GCGC	4 cut(s)	16, 177, 195, 299
AspS9I	GGNCC	1 cut(s)	588
AsuHPI	GGTGA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	152
BanI	GGYRCC	4 cut(s)	13, 296, 320, 731
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	3 cut(s)	33, 398, 479
BbvI	GCAGC	4 cut(s)	279, 606, 634, 787
BccI	CCATC	1 cut(s)	760
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	2 cut(s)	443, 714
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	3 cut(s)	17, 178, 300
BfuAI	ACCTGC	1 cut(s)	691
BglII	AGATCT	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	5 cut(s)	15, 298, 322, 733, 745
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	4 cut(s)	500, 545, 653, 665
BpiI	GAAGAC	3 cut(s)	33, 398, 479
BpmI	CTGGAG	2 cut(s)	123, 310
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
BsaJI	CCNNGG	2 cut(s)	113, 852
BsaWI	WCCGGW	1 cut(s)	814
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	113, 852
BseGI	GGATG	2 cut(s)	536, 752
BseJI	GATNNNNATC	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	339, 492
BseRI	GAGGAG	3 cut(s)	263, 410, 413
BseXI	GCAGC	4 cut(s)	279, 606, 634, 787
BsgI	GTGCAG	2 cut(s)	566, 669
Bsh1236I	CGCG	4 cut(s)	71, 115, 193, 365
Bsh1285I	CGRYCG	2 cut(s)	75, 357
BshFI	GGCC	1 cut(s)	590
BshNI	GGYRCC	4 cut(s)	13, 296, 320, 731
BsiEI	CGRYCG	2 cut(s)	75, 357
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	815
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	368, 724, 817, 841
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	340, 493
BspFNI	CGCG	4 cut(s)	71, 115, 193, 365
BspLI	GGNNCC	5 cut(s)	15, 298, 322, 733, 745
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	1 cut(s)	825
BspT107I	GGYRCC	4 cut(s)	13, 296, 320, 731
BsrBI	CCGCTC	2 cut(s)	283, 294
BssECI	CCNNGG	2 cut(s)	113, 852
BssMI	GATC	4 cut(s)	368, 724, 817, 841
BssNI	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	117, 164, 341
BstDEI	CTNAG	3 cut(s)	348, 372, 501
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	536, 752
BstFNI	CGCG	4 cut(s)	71, 115, 193, 365
BstH2I	RGCGCY	3 cut(s)	17, 178, 300
BstHHI	GCGC	4 cut(s)	16, 177, 195, 299
BstKTI	GATC	4 cut(s)	371, 727, 820, 844
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	368, 724, 817, 841
BstMCI	CGRYCG	2 cut(s)	75, 357
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 181, 190, 201, 349, 553
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	620
BstUI	CGCG	4 cut(s)	71, 115, 193, 365
BstV1I	GCAGC	4 cut(s)	279, 606, 634, 787
BstV2I	GAAGAC	3 cut(s)	33, 398, 479
BstX2I	RGATCY	2 cut(s)	368, 817
BstYI	RGATCY	2 cut(s)	368, 817
BsuRI	GGCC	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	536, 752
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	117, 164, 341
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	4 cut(s)	16, 177, 195, 299
Cfr13I	GGNCC	1 cut(s)	588
Cfr42I	CCGCGG	1 cut(s)	116
CseI	GACGC	2 cut(s)	368, 432
Csp6I	GTAC	2 cut(s)	440, 773
CviAII	CATG	4 cut(s)	55, 760, 769, 776
CviQI	GTAC	2 cut(s)	440, 773
DdeI	CTNAG	3 cut(s)	348, 372, 501
DinI	GGCGCC	2 cut(s)	15, 298
DpnI	GATC	4 cut(s)	370, 726, 819, 843
DpnII	GATC	4 cut(s)	368, 724, 817, 841
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	538
EgeI	GGCGCC	2 cut(s)	15, 298
EheI	GGCGCC	2 cut(s)	15, 298
FaeI	CATG	4 cut(s)	58, 763, 772, 779
FaiI	YATR	8 cut(s)	56, 460, 474, 534, 761, 770, 777, 862
FatI	CATG	4 cut(s)	54, 759, 768, 775
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	841
FokI	GGATG	2 cut(s)	523, 739
FspBI	CTAG	2 cut(s)	443, 714
GlaI	GCGC	4 cut(s)	15, 176, 194, 298
GsuI	CTGGAG	2 cut(s)	123, 310
HaeII	RGCGCY	3 cut(s)	17, 178, 300
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	1 cut(s)	815
HgaI	GACGC	2 cut(s)	368, 432
HhaI	GCGC	4 cut(s)	16, 177, 195, 299
Hin1I	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
Hin1II	CATG	4 cut(s)	58, 763, 772, 779
Hin6I	GCGC	4 cut(s)	14, 175, 193, 297
HinP1I	GCGC	4 cut(s)	14, 175, 193, 297
HincII	GTYRAC	2 cut(s)	34, 217
HindII	GTYRAC	2 cut(s)	34, 217
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	4 cut(s)	254, 332, 403, 717
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	3 cut(s)	34, 217, 707
Hpy188I	TCNGA	4 cut(s)	98, 328, 502, 853
Hpy188III	TCNNGA	2 cut(s)	577, 836
Hpy8I	GTNNAC	3 cut(s)	34, 217, 707
Hpy99I	CGWCG	5 cut(s)	68, 71, 80, 127, 362
HpyAV	CCTTC	2 cut(s)	232, 409
HpyCH4IV	ACGT	5 cut(s)	30, 66, 122, 186, 219
HpyCH4V	TGCA	7 cut(s)	536, 547, 622, 644, 656, 686, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 181, 190, 201, 349, 553
HpyF3I	CTNAG	3 cut(s)	348, 372, 501
HpySE526I	ACGT	5 cut(s)	30, 66, 122, 186, 219
Hsp92I	GRCGYC	6 cut(s)	14, 30, 66, 219, 297, 360
Hsp92II	CATG	4 cut(s)	58, 763, 772, 779
HspAI	GCGC	4 cut(s)	14, 175, 193, 297
KasI	GGCGCC	2 cut(s)	13, 296
Ksp22I	TGATCA	1 cut(s)	841
KspI	CCGCGG	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	368, 724, 817, 841
LmnI	GCTCC	4 cut(s)	159, 182, 291, 854
Lsp1109I	GCAGC	4 cut(s)	279, 606, 634, 787
LweI	GCATC	4 cut(s)	500, 545, 653, 665
MaeI	CTAG	2 cut(s)	443, 714
MaeII	ACGT	5 cut(s)	30, 66, 122, 186, 219
MalI	GATC	4 cut(s)	370, 726, 819, 843
MbiI	CCGCTC	2 cut(s)	283, 294
MboI	GATC	4 cut(s)	368, 724, 817, 841
MflI	RGATCY	2 cut(s)	368, 817
MluCI	AATT	2 cut(s)	427, 455
Mly113I	GGCGCC	2 cut(s)	14, 297
MlyI	GAGTC	2 cut(s)	341, 412
MmeI	TCCRAC	1 cut(s)	780
Mph1103I	ATGCAT	1 cut(s)	538
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	2 cut(s)	115, 312
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	4 cut(s)	71, 115, 193, 365
MwoI	GCNNNNNNNGC	6 cut(s)	172, 181, 190, 201, 349, 553
NarI	GGCGCC	2 cut(s)	14, 297
NdeII	GATC	4 cut(s)	368, 724, 817, 841
NlaIII	CATG	4 cut(s)	58, 763, 772, 779
NlaIV	GGNNCC	5 cut(s)	15, 298, 322, 733, 745
NmeAIII	GCCGAG	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	763
PaeR7I	CTCGAG	1 cut(s)	152
PciI	ACATGT	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 159, 216
PfeI	GAWTC	2 cut(s)	254, 717
PflFI	GACNNNGTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	287
PleI	GAGTC	2 cut(s)	340, 411
PluTI	GGCGCC	2 cut(s)	17, 300
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	2 cut(s)	340, 411
Ppu21I	YACGTR	1 cut(s)	187
PscI	ACATGT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	5 cut(s)	15, 298, 322, 733, 745
PspPI	GGNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	624
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	2 cut(s)	368, 817
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	2 cut(s)	441, 774
RsaNI	GTAC	2 cut(s)	440, 773
RseI	CAYNNNNRTG	1 cut(s)	502
SacII	CCGCGG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	390
Sau3AI	GATC	4 cut(s)	368, 724, 817, 841
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	2 cut(s)	341, 412
ScrFI	CCNGG	1 cut(s)	289
SfaNI	GCATC	4 cut(s)	500, 545, 653, 665
SfcI	CTRYAG	1 cut(s)	620
SfoI	GGCGCC	2 cut(s)	15, 298
Sfr274I	CTCGAG	1 cut(s)	152
Sfr303I	CCGCGG	1 cut(s)	116
SgrBI	CCGCGG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	152, 449
SmoI	CTYRAG	2 cut(s)	152, 449
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	2 cut(s)	427, 455
SspDI	GGCGCC	2 cut(s)	13, 296
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	443, 714
StyD4I	CCNGG	1 cut(s)	287
TaiI	ACGT	5 cut(s)	33, 69, 125, 189, 222
TaqI	TCGA	5 cut(s)	90, 125, 153, 257, 576
TaqII	GACCGA	2 cut(s)	295, 371
TasI	AATT	2 cut(s)	427, 455
TfiI	GAWTC	2 cut(s)	254, 717
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseI	GCWGC	5 cut(s)	8, 267, 619, 622, 800
TspDTI	ATGAA	4 cut(s)	71, 612, 650, 792
Tth111I	GACNNNGTC	1 cut(s)	65
XceI	RCATGY	1 cut(s)	763
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	2 cut(s)	443, 714
ZraI	GACGTC	3 cut(s)	31, 67, 220
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.