Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Reverse (-)

20825304 .. 20829211

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22450.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACTTCCCCCGATGACAGTGACGGCGGCTGGGTCAAGCTCGCCATGAACGACGAGGCGGCGGTCGTCGACCTTCTTCTCCGCCTCAAGCACTCCGCGCCTCCTCCGCCGTCGAAGCGCAGTACTATTCACGGCTTTCCGACTTTGCGGTGGTGCGTAAGGCAGCGCCGCTCCAGGAACGTGCCACGTCGCCACCATGCCGACGACGTCGATGCTGAGGACAGAAAGAGCAAGAAGGGTGAGTCGAGCGGCGCCGGGGCCAGCCCCACCACGCCACTTTCCTGGAGCGGTGCCACTTCGGCTGGCGGCGTCGACGGCTCCGAAGAGTCCAGCAAGCTGCTTAAGCCGACCGATGCCGCAAGATCTAAGGTTGCTGTTAGAAATGAATCAACCATCTTCAAGAGGCCAAGAAAGAAGAAGACTTTAGCTGAATTAAAAGAGGAGGAGAGTCTGCTGTTGAAGGAAAGAAGAAATTTGGAAAATGAATTGGCAACTCTACGCCTCGTTGTTGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAAAGTGAAGCTTGAGTTGCAGTCGCCGCAGACAAAAATGAAAGCCATATTGTCTGGTGAAGCCATTTGGCACCAACATGAGCAAATAAATGCGGTTGGTGACACTACTCCAATAATGAAAACAAGTGTTCATTGCAATAACGTTGGCACTTCACAAAGCTCCTGTCCCTCAAATGTTTCTTCCAAGGTGCAACAAGAGGTTGGGAGCCGAGACACTGCCTTTTCGCTACCTGATCTAAATCTTCCATTTGGAGAGGACCCTGGCTCCGAGGTTTTATATGGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

30.31

Weight (kDa)

9.18

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	3 cut(s)	251, 290, 612
AccBSI	CCGCTC	3 cut(s)	171, 249, 288
AccI	GTMKAC	2 cut(s)	69, 312
AccII	CGCG	1 cut(s)	98
AclI	AACGTT	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	472
AcyI	GRCGYC	3 cut(s)	207, 252, 309
AfaI	GTAC	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	400, 460, 541
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	3 cut(s)	173, 281, 802
AluBI	AGCT	7 cut(s)	40, 337, 428, 537, 553, 702, 831
AluI	AGCT	7 cut(s)	40, 337, 428, 537, 553, 702, 831
Alw26I	GTCTC	1 cut(s)	747
AoxI	GGCC	3 cut(s)	258, 404, 522
ApeKI	GCWGC	2 cut(s)	163, 337
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AspLEI	GCGC	4 cut(s)	100, 120, 168, 254
AspS9I	GGNCC	3 cut(s)	258, 522, 799
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	251, 611, 653
AvaII	GGWCC	1 cut(s)	799
BanI	GGYRCC	3 cut(s)	251, 290, 612
BbsI	GAAGAC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	175, 324
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	4 cut(s)	40, 94, 148, 331
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	175, 283, 804
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	747
BfoI	RGCGCY	2 cut(s)	169, 255
BfrI	CTTAAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	9 cut(s)	28, 60, 164, 169, 250, 307, 338, 357, 569
BlsI	GCNGC	9 cut(s)	29, 61, 165, 170, 251, 308, 339, 358, 570
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	4 cut(s)	175, 256, 283, 804
Bme18I	GGWCC	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	258, 522, 799
BmiI	GGNNCC	8 cut(s)	253, 259, 292, 319, 614, 749, 801, 808
BmrFI	CCNGG	4 cut(s)	175, 256, 283, 804
BmsI	GCATC	2 cut(s)	202, 343
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	157, 304
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	71, 575
BpuMI	CCSGG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	3 cut(s)	207, 252, 309
BsaJI	CCNNGG	4 cut(s)	255, 726, 802, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	3 cut(s)	175, 283, 804
BseDI	CCNNGG	4 cut(s)	255, 726, 802, 810
BseJI	GATNNNNATC	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	3 cut(s)	93, 455, 458
BseXI	GCAGC	2 cut(s)	175, 324
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	2 cut(s)	66, 351
BshFI	GGCC	3 cut(s)	260, 406, 524
BshNI	GGYRCC	3 cut(s)	251, 290, 612
BsiEI	CGRYCG	2 cut(s)	66, 351
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	693
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	260, 406, 524
Bsp143I	GATC	2 cut(s)	362, 775
BspANI	GGCC	3 cut(s)	260, 406, 524
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	8 cut(s)	253, 259, 292, 319, 614, 749, 801, 808
BspT107I	GGYRCC	3 cut(s)	251, 290, 612
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	3 cut(s)	171, 249, 288
BsrDI	GCAATG	1 cut(s)	673
BssECI	CCNNGG	4 cut(s)	255, 726, 802, 810
BssMI	GATC	2 cut(s)	362, 775
BssNI	GRCGYC	3 cut(s)	207, 252, 309
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	3 cut(s)	175, 283, 804
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	3 cut(s)	207, 252, 309
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	42, 262, 304, 335
BstDEI	CTNAG	2 cut(s)	216, 366
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	2 cut(s)	169, 255
BstHHI	GCGC	4 cut(s)	100, 120, 168, 254
BstKTI	GATC	2 cut(s)	365, 778
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	2 cut(s)	362, 775
BstMCI	CGRYCG	2 cut(s)	66, 351
BstMWI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
BstNI	CCWGG	3 cut(s)	175, 283, 804
BstSCI	CCNGG	4 cut(s)	173, 254, 281, 802
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	175, 324
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	260, 406, 524
BtrI	CACGTC	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	25, 756
Cac8I	GCNNGC	4 cut(s)	42, 262, 304, 335
CfoI	GCGC	4 cut(s)	100, 120, 168, 254
Cfr13I	GGNCC	3 cut(s)	258, 522, 799
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	3 cut(s)	46, 197, 620
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	216, 366
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	364, 777
DpnII	GATC	2 cut(s)	362, 775
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	2 cut(s)	71, 96
Eco130I	CCWWGG	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	799
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	3 cut(s)	173, 281, 802
EcoT14I	CCWWGG	1 cut(s)	726
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	3 cut(s)	49, 200, 623
FaiI	YATR	6 cut(s)	47, 198, 590, 621, 820, 822
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	3 cut(s)	45, 196, 619
FblI	GTMKAC	2 cut(s)	69, 312
Fnu4HI	GCNGC	9 cut(s)	28, 60, 164, 169, 250, 307, 338, 357, 569
Fsp4HI	GCNGC	9 cut(s)	28, 60, 164, 169, 250, 307, 338, 357, 569
GlaI	GCGC	4 cut(s)	99, 119, 167, 253
GluI	GCNGC	9 cut(s)	28, 60, 164, 169, 250, 307, 338, 357, 569
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	2 cut(s)	157, 304
HaeII	RGCGCY	2 cut(s)	169, 255
HaeIII	GGCC	3 cut(s)	260, 406, 524
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	4 cut(s)	100, 120, 168, 254
Hin1I	GRCGYC	3 cut(s)	207, 252, 309
Hin1II	CATG	3 cut(s)	49, 200, 623
Hin6I	GCGC	4 cut(s)	98, 118, 166, 252
HinP1I	GCGC	4 cut(s)	98, 118, 166, 252
HincII	GTYRAC	2 cut(s)	70, 313
HindII	GTYRAC	2 cut(s)	70, 313
HindIII	AAGCTT	2 cut(s)	535, 551
HinfI	GANTC	4 cut(s)	242, 326, 386, 448
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	251, 611, 653
Hpy166II	GTNNAC	2 cut(s)	70, 313
Hpy188I	TCNGA	3 cut(s)	141, 322, 811
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	70, 313
Hpy99I	CGWCG	9 cut(s)	56, 71, 115, 192, 206, 209, 212, 314, 317
HpyAV	CCTTC	3 cut(s)	83, 229, 454
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	4 cut(s)	180, 187, 207, 684
HpyCH4V	TGCA	3 cut(s)	562, 678, 733
HpyF10VI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
HpyF3I	CTNAG	2 cut(s)	216, 366
HpySE526I	ACGT	4 cut(s)	180, 187, 207, 684
Hsp92I	GRCGYC	3 cut(s)	207, 252, 309
Hsp92II	CATG	3 cut(s)	49, 200, 623
HspAI	GCGC	4 cut(s)	98, 118, 166, 252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	362, 775
LmnI	GCTCC	6 cut(s)	176, 285, 323, 707, 747, 812
Lsp1109I	GCAGC	2 cut(s)	175, 324
LweI	GCATC	2 cut(s)	202, 343
MaeII	ACGT	4 cut(s)	180, 187, 207, 684
MaeIII	GTNAC	2 cut(s)	20, 641
MalI	GATC	2 cut(s)	364, 777
MbiI	CCGCTC	3 cut(s)	171, 249, 288
MboI	GATC	2 cut(s)	362, 775
MboII	GAAGA	8 cut(s)	68, 335, 388, 427, 430, 480, 714, 776
MflI	RGATCY	1 cut(s)	362
MluCI	AATT	3 cut(s)	431, 472, 485
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	3 cut(s)	251, 335, 457
MmeI	TCCRAC	1 cut(s)	164
MseI	TTAA	2 cut(s)	342, 434
MslI	CAYNNNNRTG	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	4 cut(s)	175, 256, 283, 804
MvaI	CCWGG	3 cut(s)	175, 283, 804
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	8 cut(s)	97, 106, 115, 299, 315, 343, 559, 568
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	362, 775
NlaIII	CATG	3 cut(s)	49, 200, 623
NlaIV	GGNNCC	8 cut(s)	253, 259, 292, 319, 614, 749, 801, 808
NmeAIII	GCCGAG	1 cut(s)	776
NmuCI	GTSAC	2 cut(s)	20, 641
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 318
PfeI	GAWTC	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	173, 281
PkrI	GCNGC	9 cut(s)	29, 61, 165, 170, 251, 308, 339, 358, 570
PleI	GAGTC	3 cut(s)	250, 334, 456
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	3 cut(s)	250, 334, 456
PpuMI	RGGWCCY	1 cut(s)	799
Psp1406I	AACGTT	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	3 cut(s)	173, 281, 802
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	3 cut(s)	173, 281, 802
PspN4I	GGNNCC	8 cut(s)	253, 259, 292, 319, 614, 749, 801, 808
PspPI	GGNCC	3 cut(s)	258, 522, 799
PspPPI	RGGWCCY	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	618
SalI	GTCGAC	2 cut(s)	68, 311
SaqAI	TTAA	2 cut(s)	342, 434
SatI	GCNGC	9 cut(s)	28, 60, 164, 169, 250, 307, 338, 357, 569
Sau3AI	GATC	2 cut(s)	362, 775
Sau96I	GGNCC	3 cut(s)	258, 522, 799
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	3 cut(s)	251, 335, 457
ScrFI	CCNGG	4 cut(s)	175, 256, 283, 804
SfaNI	GCATC	2 cut(s)	202, 343
SfoI	GGCGCC	1 cut(s)	253
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	86, 341, 554
SmoI	CTYRAG	3 cut(s)	86, 341, 554
Sse9I	AATT	3 cut(s)	431, 472, 485
SspDI	GGCGCC	1 cut(s)	251
StyD4I	CCNGG	4 cut(s)	173, 254, 281, 802
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	4 cut(s)	183, 190, 210, 687
TaqI	TCGA	5 cut(s)	69, 113, 210, 245, 312
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	3 cut(s)	431, 472, 485
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	7 cut(s)	30, 62, 171, 252, 309, 359, 571
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	342, 434
Tru9I	TTAA	2 cut(s)	342, 434
TscAI	CASTG	2 cut(s)	25, 763
TseFI	GTSAC	2 cut(s)	20, 641
TseI	GCWGC	2 cut(s)	163, 337
Tsp45I	GTSAC	2 cut(s)	20, 641
TspDTI	ATGAA	7 cut(s)	62, 399, 498, 546, 596, 662, 674
TspRI	CASTG	2 cut(s)	25, 763
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	69, 312
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.