Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006131

Physical Location & Seq

Genomic Coordinates Forward (+)

51872090 .. 51876279

Gene Structure 4190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGCGGCGCCACCCACCGAAGACGTCAACGATTGGGTCAAACTCGCCATGAAAGACGACGTGGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCCGCCGCCACCGTCGATGTTCAAGTCTCCAGCTCTGAAGCTCGGGTGGAGTGTGCGGCAGAGGCGCTCCAAGCACGTGCCGCGCCACCCCAGCGACGTCGTTGTTGACGTCAAAAAGAAGAAGAAGGCGGCGGAGGAGTCGACCAGAGCCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCCGCCTGAGCCGACCGACGCCGCGAGATCTAAGGTTGCTGTTACAAGTTGCACGACCATCTCCAAGAGGCCGAGAAAGAGGAAGCTGCAGCAAACAATGATGAAAGTTGCCTCTTCCTCTGCATCGGGTGAAGCCATTTCTTATCAACCAGCACAAGTAAATGTAGTTAGTGAACTTACTAGAATCATTGATCTTGGCACTTCACAGAGTTCCTGTCCATCCAACATTTCTTGCATGGTACACGAAGTTGAGAACTGCCATGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAACTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.12

Weight (kDa)

8.26

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15800 AT1G80610
fragaria_vesca	FvH4_6g29000
malus_domestica	MD09G1223300.v1.1 MD17G1219700.v1.1
prunus_persica	Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1 Prupe.3G095200_v2.0.a1
pyrus_communis	pycom12419g00130 pycom17g22450
rosa_chinensis	RchiOBHm_Chr2g0133521
rosa_laevigata	RLG00000019351
rosa_multiflora	Rmu_co8487101.1_g000001 Rmu_sc0000924.1_g000058
rosa_roxburghii	Rroxscaffold_2G00111000
rosa_rugosa	Rorug02G0312600
rosa_samantha	Rh2AG365500 Rh2BG371100 Rh2CG348700 Rh2DG387900
rosa_wichuraiana	Rw0G005120 Rw2G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	3 cut(s)	30, 210, 222
AccB1I	GGYRCC	3 cut(s)	10, 290, 314
AccBSI	CCGCTC	2 cut(s)	277, 288
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	2 cut(s)	193, 359
AclWI	GGATC	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	187
AcyI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
AfaI	GTAC	1 cut(s)	576
AgsI	TTSAA	2 cut(s)	133, 638
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	5 cut(s)	143, 151, 421, 602, 675
AluI	AGCT	5 cut(s)	143, 151, 421, 602, 675
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	4 cut(s)	5, 421, 424, 602
AspLEI	GCGC	4 cut(s)	13, 177, 195, 293
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	152
BanI	GGYRCC	3 cut(s)	10, 290, 314
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	408, 436, 589
BccI	CCATC	2 cut(s)	401, 562
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	3 cut(s)	14, 178, 294
BglII	AGATCT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	12, 292, 316
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	123, 304
Bpu10I	CCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
BsaJI	CCNNGG	1 cut(s)	654
BsaWI	WCCGGW	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	554
BseJI	GATNNNNATC	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	408, 436, 589
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	193, 359
Bsh1285I	CGRYCG	2 cut(s)	72, 351
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	3 cut(s)	10, 290, 314
BsiEI	CGRYCG	2 cut(s)	72, 351
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	362, 526, 619, 643
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	193, 359
BspLI	GGNNCC	3 cut(s)	12, 292, 316
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	627
BspT107I	GGYRCC	3 cut(s)	10, 290, 314
BsrBI	CCGCTC	2 cut(s)	277, 288
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	4 cut(s)	362, 526, 619, 643
BssNI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	318, 454
BstACI	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	262, 335
BstDEI	CTNAG	2 cut(s)	342, 366
BstF5I	GGATG	1 cut(s)	554
BstFNI	CGCG	2 cut(s)	193, 359
BstH2I	RGCGCY	3 cut(s)	14, 178, 294
BstHHI	GCGC	4 cut(s)	13, 177, 195, 293
BstKTI	GATC	4 cut(s)	365, 529, 622, 646
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	362, 526, 619, 643
BstMCI	CGRYCG	2 cut(s)	72, 351
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	2 cut(s)	193, 359
BstV1I	GCAGC	3 cut(s)	408, 436, 589
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	362, 619
BstYI	RGATCY	2 cut(s)	362, 619
BsuRI	GGCC	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	554
Cac8I	GCNNGC	2 cut(s)	262, 335
CfoI	GCGC	4 cut(s)	13, 177, 195, 293
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	3 cut(s)	52, 571, 596
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	342, 366
DinI	GGCGCC	2 cut(s)	12, 292
DpnI	GATC	4 cut(s)	364, 528, 621, 645
DpnII	GATC	4 cut(s)	362, 526, 619, 643
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	318, 454
EarI	CTCTTC	2 cut(s)	318, 454
EciI	GGCGGA	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	281
EgeI	GGCGCC	2 cut(s)	12, 292
EheI	GGCGCC	2 cut(s)	12, 292
FaeI	CATG	3 cut(s)	55, 574, 599
FaiI	YATR	4 cut(s)	53, 572, 597, 664
FatI	CATG	3 cut(s)	51, 570, 595
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	1 cut(s)	541
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	4 cut(s)	12, 176, 194, 292
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	2 cut(s)	123, 304
HaeII	RGCGCY	3 cut(s)	14, 178, 294
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	617
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	4 cut(s)	13, 177, 195, 293
Hin1I	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Hin1II	CATG	3 cut(s)	55, 574, 599
Hin6I	GCGC	4 cut(s)	11, 175, 193, 291
HinP1I	GCGC	4 cut(s)	11, 175, 193, 291
HincII	GTYRAC	3 cut(s)	31, 217, 252
HindII	GTYRAC	3 cut(s)	31, 217, 252
HinfI	GANTC	3 cut(s)	248, 326, 519
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	5 cut(s)	31, 217, 252, 509, 577
Hpy188I	TCNGA	4 cut(s)	95, 147, 322, 655
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	5 cut(s)	31, 217, 252, 509, 577
Hpy99I	CGWCG	6 cut(s)	65, 77, 127, 209, 212, 356
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	5 cut(s)	27, 63, 186, 207, 219
HpyCH4V	TGCA	4 cut(s)	387, 424, 458, 570
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
HpyF3I	CTNAG	2 cut(s)	342, 366
HpySE526I	ACGT	5 cut(s)	27, 63, 186, 207, 219
Hsp92I	GRCGYC	6 cut(s)	11, 27, 207, 219, 291, 354
Hsp92II	CATG	3 cut(s)	55, 574, 599
HspAI	GCGC	4 cut(s)	11, 175, 193, 291
KasI	GGCGCC	2 cut(s)	10, 290
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	362, 526, 619, 643
LmnI	GCTCC	2 cut(s)	182, 285
Lsp1109I	GCAGC	3 cut(s)	408, 436, 589
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	5 cut(s)	27, 63, 186, 207, 219
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	4 cut(s)	364, 528, 621, 645
MbiI	CCGCTC	2 cut(s)	277, 288
MboI	GATC	4 cut(s)	362, 526, 619, 643
MboII	GAAGA	6 cut(s)	35, 241, 244, 335, 441, 620
MflI	RGATCY	2 cut(s)	362, 619
Mly113I	GGCGCC	2 cut(s)	11, 291
MlyI	GAGTC	2 cut(s)	257, 335
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	8 cut(s)	165, 238, 328, 396, 408, 457, 463, 649
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	193, 359
MwoI	GCNNNNNNNGC	7 cut(s)	112, 115, 172, 181, 190, 201, 343
NarI	GGCGCC	2 cut(s)	11, 291
NdeII	GATC	4 cut(s)	362, 526, 619, 643
NlaIII	CATG	3 cut(s)	55, 574, 599
NlaIV	GGNNCC	3 cut(s)	12, 292, 316
NmeAIII	GCCGAG	2 cut(s)	127, 432
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 216
PfeI	GAWTC	1 cut(s)	519
PfoI	TCCNGGA	1 cut(s)	281
PleI	GAGTC	2 cut(s)	256, 334
PluTI	GGCGCC	2 cut(s)	14, 294
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	2 cut(s)	256, 334
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	12, 292, 316
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	362, 619
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SalI	GTCGAC	1 cut(s)	250
Sau3AI	GATC	4 cut(s)	362, 526, 619, 643
SchI	GAGTC	2 cut(s)	257, 335
ScrFI	CCNGG	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	422
SfoI	GGCGCC	2 cut(s)	12, 292
SspDI	GGCGCC	2 cut(s)	10, 290
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	5 cut(s)	30, 66, 189, 210, 222
TaqI	TCGA	3 cut(s)	87, 125, 251
TaqII	GACCGA	2 cut(s)	289, 365
TfiI	GAWTC	1 cut(s)	519
TseI	GCWGC	4 cut(s)	5, 421, 424, 602
TspDTI	ATGAA	3 cut(s)	68, 452, 612
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	516
ZraI	GACGTC	3 cut(s)	28, 208, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.