Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Forward (+)

6099039 .. 6100397

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTAATACAGATAAGCTGATGAACCAGATCTTTGAATTGAAATTTACGTCAAAGTCTCTGCAGAGGCAAGCTAGGAAGTGCGAAAAAGAGGAGAGATCGGAGAAGCTCAAGGTAAAGAAAGCCATTGAGAAAGGTAACATGGATGGTGCTCGGATCTATGCCGAGAACGCCATTCGCAAACGCAGCGAGCAGATGAACTACCTTCGTCTCTCTTCTCGATTGGACGCTGTTGTTGCTCGACTCGATACCCAGGCTAAGATGGCTACCATCACCAAATCGATGACCAACATTGTCAAATCCCTCGAATCGTCTCTTACCACTGGCAACTTACAGAAGATGTCTGAGACGATGGATTCGTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTGAGTTCATGGATAATGCAATGGCTGGCTCTACTTCATTGTCGACTCCAGAAGGAGAAGTCAACAGCTTGATGCAGCAAGTAGCAGATGATTACGGTCTTGAAGTTTCTGTTGGACTACCTCAGCCTGCTGGTCATGCCATTCCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTAACCAGGAGACTTGCCGAGCTTAAAGCCAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

6.66

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	12 - 173	2.2e-13	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	38, 43, 497
AjnI	CCWGG	2 cut(s)	252, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AluBI	AGCT	6 cut(s)	19, 74, 109, 395, 462, 595
AluI	AGCT	6 cut(s)	19, 74, 109, 395, 462, 595
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	5 cut(s)	63, 215, 318, 341, 577
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	186, 469
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AsuHPI	GGTGA	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	198, 481
BccI	CCATC	4 cut(s)	140, 256, 278, 346
BciT130I	CCWGG	2 cut(s)	254, 580
BcoDI	GTCTC	5 cut(s)	63, 215, 318, 341, 577
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	187, 470
BlsI	GCNGC	2 cut(s)	188, 471
Bme1390I	CCNGG	2 cut(s)	254, 580
BmrFI	CCNGG	2 cut(s)	254, 580
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	254, 580
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	151, 574
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	336, 387, 530
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	2 cut(s)	107, 578
BseXI	GCAGC	2 cut(s)	198, 481
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	154
BsmAI	GTCTC	5 cut(s)	63, 215, 318, 341, 577
BsmBI	CGTCTC	3 cut(s)	215, 318, 341
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	30, 98, 156
BspCNI	CTCAG	3 cut(s)	337, 388, 529
BspDI	ATCGAT	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	30, 98, 156
Bst2UI	CCWGG	2 cut(s)	254, 580
Bst4CI	ACNGT	2 cut(s)	372, 491
Bst6I	CTCTTC	2 cut(s)	220, 546
BstC8I	GCNNGC	4 cut(s)	72, 191, 421, 522
BstDEI	CTNAG	4 cut(s)	258, 345, 396, 516
BstF5I	GGATG	2 cut(s)	151, 574
BstKTI	GATC	3 cut(s)	33, 101, 159
BstMAI	GTCTC	5 cut(s)	63, 215, 318, 341, 577
BstMBI	GATC	3 cut(s)	30, 98, 156
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 186, 236, 263, 530
BstNI	CCWGG	2 cut(s)	254, 580
BstSCI	CCNGG	2 cut(s)	252, 578
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	198, 481
BstX2I	RGATCY	2 cut(s)	30, 156
BstYI	RGATCY	2 cut(s)	30, 156
Bsu15I	ATCGAT	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	151, 574
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	4 cut(s)	72, 191, 421, 522
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	236
CviAII	CATG	4 cut(s)	142, 382, 403, 530
DdeI	CTNAG	4 cut(s)	258, 345, 396, 516
DpnI	GATC	3 cut(s)	32, 100, 158
DpnII	GATC	3 cut(s)	30, 98, 156
Eam1104I	CTCTTC	2 cut(s)	220, 546
EarI	CTCTTC	2 cut(s)	220, 546
Eco57I	CTGAAG	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	252, 578
Esp3I	CGTCTC	3 cut(s)	215, 318, 341
FaeI	CATG	4 cut(s)	145, 385, 406, 533
FaiI	YATR	5 cut(s)	143, 162, 383, 404, 531
FatI	CATG	4 cut(s)	141, 381, 402, 529
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	187, 470
FokI	GGATG	2 cut(s)	158, 581
Fsp4HI	GCNGC	2 cut(s)	187, 470
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	187, 470
GsuI	CTGGAG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	145, 385, 406, 533
HincII	GTYRAC	2 cut(s)	438, 457
HindII	GTYRAC	2 cut(s)	438, 457
HinfI	GANTC	4 cut(s)	243, 308, 356, 439
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	379, 438, 457
Hpy188I	TCNGA	3 cut(s)	103, 156, 346
Hpy188III	TCNNGA	3 cut(s)	219, 443, 494
Hpy8I	GTNNAC	3 cut(s)	379, 438, 457
HpyAV	CCTTC	2 cut(s)	215, 440
HpyCH4III	ACNGT	2 cut(s)	372, 491
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	64, 413, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 186, 236, 263, 530
HpyF3I	CTNAG	4 cut(s)	258, 345, 396, 516
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	145, 385, 406, 533
Kzo9I	GATC	3 cut(s)	30, 98, 156
Lsp1109I	GCAGC	2 cut(s)	198, 481
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	32, 100, 158
MboI	GATC	3 cut(s)	30, 98, 156
MboII	GAAGA	3 cut(s)	207, 349, 563
MflI	RGATCY	2 cut(s)	30, 156
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	38, 44
MlyI	GAGTC	2 cut(s)	237, 433
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	60, 85, 314, 525, 556, 559, 599
MseI	TTAA	3 cut(s)	575, 597, 610
MspR9I	CCNGG	2 cut(s)	254, 580
MvaI	CCWGG	2 cut(s)	254, 580
MwoI	GCNNNNNNNGC	5 cut(s)	170, 186, 236, 263, 530
NdeII	GATC	3 cut(s)	30, 98, 156
NlaIII	CATG	4 cut(s)	145, 385, 406, 533
NmeAIII	GCCGAG	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	308, 356
PkrI	GCNGC	2 cut(s)	188, 471
PleI	GAGTC	2 cut(s)	237, 433
PpsI	GAGTC	2 cut(s)	237, 433
Psp6I	CCWGG	2 cut(s)	252, 578
PspGI	CCWGG	2 cut(s)	252, 578
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	30, 156
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	575, 597, 610
SatI	GCNGC	2 cut(s)	187, 470
Sau3AI	GATC	3 cut(s)	30, 98, 156
SchI	GAGTC	2 cut(s)	237, 433
ScrFI	CCNGG	2 cut(s)	254, 580
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	38, 44
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	252, 578
TaaI	ACNGT	2 cut(s)	372, 491
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	6 cut(s)	220, 241, 246, 281, 306, 437
TasI	AATT	2 cut(s)	38, 44
TfiI	GAWTC	2 cut(s)	308, 356
Tru1I	TTAA	3 cut(s)	575, 597, 610
Tru9I	TTAA	3 cut(s)	575, 597, 610
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	186, 469
TspDTI	ATGAA	4 cut(s)	38, 212, 391, 420
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.