Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

59670890 .. 59671940

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATACCACCATTACAAGAAAATTCCACCACCATGGGCAACACGGAGAAGCTGATGAACCAGATCATGGAGCTGAAATTCACGTCCAAAACCCTCGAGTCCTCGCTCACCACCGGAAACCTCCAGAAGAAGTCGGAGACCATGGACTCGTTTGAGAAGCAGTTCGTCAACATGGAGGTCCAGGCTGAGTTCATGGAGAGCTCCATGGCCGGCTCCACCTCGCTTTCCACTCCCGAAGGTGAGGTCAACAGTCTTATGCAACAGGTTGCCGATGACTATGGGCTTGAGGTCTCCGTGGGCCTGCCACAGCCGGCGGCCCATGCCGTGCCGACCAAGGAGGCCGGTGAGGATGATCTTTCCAGGAGGCTTGCGGAGCTCAAGGCTAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

130

Amino Acids

14.2

Weight (kDa)

4.54

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	2 cut(s)	314, 371
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	22, 77
AfiI	CCNNNNNNNGG	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	180, 359
AluBI	AGCT	4 cut(s)	52, 73, 201, 376
AluI	AGCT	4 cut(s)	52, 73, 201, 376
Alw21I	GWGCWC	2 cut(s)	203, 378
Alw26I	GTCTC	2 cut(s)	131, 295
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	4 cut(s)	207, 298, 315, 339
ApoI	RAATTY	2 cut(s)	22, 77
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	178, 298, 316
AsuHPI	GGTGA	3 cut(s)	100, 251, 356
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	178
BanII	GRGCYC	2 cut(s)	203, 378
Bbv12I	GWGCWC	2 cut(s)	203, 378
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	182, 361
BcoDI	GTCTC	2 cut(s)	131, 295
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	182, 361
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	3 cut(s)	178, 298, 316
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	182, 361
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	305, 362
BsaI	GGTCTC	2 cut(s)	131, 295
BsaJI	CCNNGG	5 cut(s)	33, 141, 204, 294, 333
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	3 cut(s)	209, 310, 341
BseBI	CCWGG	2 cut(s)	182, 361
BseDI	CCNNGG	5 cut(s)	33, 141, 204, 294, 333
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	209, 300, 317, 341
BsiHKAI	GWGCWC	2 cut(s)	203, 378
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	4 cut(s)	114, 210, 311, 342
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	131, 295
BsnI	GGCC	4 cut(s)	209, 300, 317, 341
Bso31I	GGTCTC	2 cut(s)	131, 295
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	203, 378
Bsp143I	GATC	2 cut(s)	63, 352
Bsp19I	CCATGG	3 cut(s)	33, 141, 204
BspACI	CCGC	2 cut(s)	314, 371
BspANI	GGCC	4 cut(s)	209, 300, 317, 341
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	214
BspTNI	GGTCTC	2 cut(s)	131, 295
BsrFI	RCCGGY	3 cut(s)	209, 310, 341
BssAI	RCCGGY	3 cut(s)	209, 310, 341
BssECI	CCNNGG	5 cut(s)	33, 141, 204, 294, 333
BssMI	GATC	2 cut(s)	63, 352
BssT1I	CCWWGG	4 cut(s)	33, 141, 204, 333
Bst2UI	CCWGG	2 cut(s)	182, 361
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	4 cut(s)	211, 302, 312, 369
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	4 cut(s)	33, 141, 204, 294
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	66, 355
BstMAI	GTCTC	2 cut(s)	131, 295
BstMBI	GATC	2 cut(s)	63, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 373
BstNI	CCWGG	2 cut(s)	182, 361
BstSCI	CCNGG	2 cut(s)	180, 359
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	209, 300, 317, 341
BtgI	CCRYGG	4 cut(s)	33, 141, 204, 294
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	4 cut(s)	211, 302, 312, 369
Cfr10I	RCCGGY	3 cut(s)	209, 310, 341
Cfr13I	GGNCC	3 cut(s)	178, 298, 316
CviAII	CATG	7 cut(s)	34, 67, 142, 172, 193, 205, 320
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	65, 354
DpnII	GATC	2 cut(s)	63, 352
EaeI	YGGCCR	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	201, 376
Eco130I	CCWWGG	4 cut(s)	33, 141, 204, 333
Eco24I	GRGCYC	2 cut(s)	203, 378
Eco31I	GGTCTC	2 cut(s)	131, 295
Eco47I	GGWCC	1 cut(s)	178
Eco53kI	GAGCTC	2 cut(s)	201, 376
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	2 cut(s)	201, 376
EcoRII	CCWGG	2 cut(s)	180, 359
EcoT14I	CCWWGG	4 cut(s)	33, 141, 204, 333
EcoT38I	GRGCYC	2 cut(s)	203, 378
ErhI	CCWWGG	4 cut(s)	33, 141, 204, 333
FaeI	CATG	7 cut(s)	37, 70, 145, 175, 196, 208, 323
FaiI	YATR	9 cut(s)	35, 68, 143, 173, 194, 206, 257, 279, 321
FatI	CATG	7 cut(s)	33, 66, 141, 171, 192, 204, 319
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	203, 378
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	209, 300, 317, 341
HapII	CCGG	4 cut(s)	114, 210, 311, 342
Hin1II	CATG	7 cut(s)	37, 70, 145, 175, 196, 208, 323
HincII	GTYRAC	2 cut(s)	169, 247
HindII	GTYRAC	2 cut(s)	169, 247
HinfI	GANTC	2 cut(s)	98, 146
HpaII	CCGG	4 cut(s)	114, 210, 311, 342
HphI	GGTGA	3 cut(s)	100, 251, 356
Hpy166II	GTNNAC	2 cut(s)	169, 247
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	124, 233
Hpy8I	GTNNAC	2 cut(s)	169, 247
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 373
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	7 cut(s)	37, 70, 145, 175, 196, 208, 323
KroI	GCCGGC	2 cut(s)	209, 310
KroNI	GCCGGC	2 cut(s)	211, 312
Kzo9I	GATC	2 cut(s)	63, 352
LmnI	GCTCC	4 cut(s)	70, 206, 218, 373
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	83
MalI	GATC	2 cut(s)	65, 354
MboI	GATC	2 cut(s)	63, 352
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	203, 378
MluCI	AATT	2 cut(s)	22, 77
MlyI	GAGTC	2 cut(s)	107, 140
MmeI	TCCRAC	1 cut(s)	114
MroNI	GCCGGC	2 cut(s)	209, 310
MroXI	GAANNNNTTC	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	4 cut(s)	114, 210, 311, 342
MspR9I	CCNGG	2 cut(s)	182, 361
MvaI	CCWGG	2 cut(s)	182, 361
MwoI	GCNNNNNNNGC	2 cut(s)	320, 373
NaeI	GCCGGC	2 cut(s)	211, 312
NcoI	CCATGG	3 cut(s)	33, 141, 204
NdeII	GATC	2 cut(s)	63, 352
NgoMIV	GCCGGC	2 cut(s)	209, 310
NlaIII	CATG	7 cut(s)	37, 70, 145, 175, 196, 208, 323
NlaIV	GGNNCC	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	95
PdiI	GCCGGC	2 cut(s)	211, 312
PdmI	GAANNNNTTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	2 cut(s)	106, 140
PpsI	GAGTC	2 cut(s)	106, 140
Psp124BI	GAGCTC	2 cut(s)	203, 378
Psp6I	CCWGG	2 cut(s)	180, 359
PspGI	CCWGG	2 cut(s)	180, 359
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	178, 298, 316
PspXI	VCTCGAGB	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	2 cut(s)	203, 378
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	63, 352
Sau96I	GGNCC	3 cut(s)	178, 298, 316
SchI	GAGTC	2 cut(s)	107, 140
ScrFI	CCNGG	2 cut(s)	182, 361
SduI	GDGCHC	2 cut(s)	203, 378
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	95, 284, 377
SmoI	CTYRAG	3 cut(s)	95, 284, 377
Sse9I	AATT	2 cut(s)	22, 77
SsiI	CCGC	2 cut(s)	314, 371
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	2 cut(s)	203, 378
StyD4I	CCNGG	2 cut(s)	180, 359
StyI	CCWWGG	4 cut(s)	33, 141, 204, 333
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	22, 77
TauI	GCSGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	71, 181
TspGWI	ACGGA	2 cut(s)	59, 283
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	22, 77
XhoI	CTCGAG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.