Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

59730277 .. 59731819

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGGTCCAGGCCGAGTTCATGGAGAGCTCCATGGCCGACTCCACTCCCGAAGGTGAGGTTAACAGTTTTACGCAACAGGTTGCCGATGACTATGGGCTTCAGGTCTCTGTGGGCCTGGCGCAGCCGGCAGCCCATGCCGTGCCCACCAAGGAGGCCGATAAGGTCGATGAGGATGATCTTTCCAGGAGGCTTGCGGAGCTTAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

72

Amino Acids

7.77

Weight (kDa)

4.22

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	203
AjnI	CCWGG	3 cut(s)	9, 117, 185
AluBI	AGCT	2 cut(s)	30, 202
AluI	AGCT	2 cut(s)	30, 202
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	4 cut(s)	12, 36, 115, 156
ApeKI	GCWGC	2 cut(s)	124, 131
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	7, 115
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	136, 143
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	3 cut(s)	11, 119, 187
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	125, 132
BlsI	GCNGC	2 cut(s)	126, 133
Bme1390I	CCNGG	3 cut(s)	11, 119, 187
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 115
BmrFI	CCNGG	3 cut(s)	11, 119, 187
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	33, 150
Bse118I	RCCGGY	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	11, 119, 187
BseDI	CCNNGG	2 cut(s)	33, 150
BseGI	GGATG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	136, 143
BshFI	GGCC	4 cut(s)	14, 38, 117, 158
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	14, 38, 117, 158
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	32, 147
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	4 cut(s)	14, 38, 117, 158
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	33, 150
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	33, 150
Bst2UI	CCWGG	3 cut(s)	11, 119, 187
Bst4CI	ACNGT	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	129, 195
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 199
BstNI	CCWGG	3 cut(s)	11, 119, 187
BstSCI	CCNGG	3 cut(s)	9, 117, 185
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	136, 143
BsuRI	GGCC	4 cut(s)	14, 38, 117, 158
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	129, 195
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	7, 115
CviAII	CATG	3 cut(s)	22, 34, 137
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	33, 150
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	3 cut(s)	9, 117, 185
EcoT14I	CCWWGG	2 cut(s)	33, 150
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	33, 150
FaeI	CATG	3 cut(s)	25, 37, 140
FaiI	YATR	4 cut(s)	23, 35, 96, 138
FatI	CATG	3 cut(s)	21, 33, 136
Fnu4HI	GCNGC	2 cut(s)	125, 132
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	125, 132
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	125, 132
HaeIII	GGCC	4 cut(s)	14, 38, 117, 158
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	25, 37, 140
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	41
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 199
Hsp92II	CATG	3 cut(s)	25, 37, 140
HspAI	GCGC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	35, 199
LpnPI	CCDG	8 cut(s)	23, 65, 89, 104, 131, 141, 172, 199
Lsp1109I	GCAGC	2 cut(s)	136, 143
MaeI	CTAG	1 cut(s)	210
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	32, 147
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	5 cut(s)	52, 148, 166, 183, 206
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	3 cut(s)	63, 204, 217
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	11, 119, 187
MvaI	CCWGG	3 cut(s)	11, 119, 187
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 199
NaeI	GCCGGC	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	25, 37, 140
NmeAIII	GCCGAG	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	126, 133
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	3 cut(s)	9, 117, 185
PspGI	CCWGG	3 cut(s)	9, 117, 185
PspPI	GGNCC	2 cut(s)	7, 115
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	63, 204, 217
SatI	GCNGC	2 cut(s)	125, 132
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	7, 115
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	11, 119, 187
SduI	GDGCHC	2 cut(s)	32, 147
SetI	ASST	9 cut(s)	9, 32, 58, 63, 84, 108, 168, 204, 217
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	9, 117, 185
StyI	CCWWGG	2 cut(s)	33, 150
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	63, 204, 217
Tru9I	TTAA	3 cut(s)	63, 204, 217
TseI	GCWGC	2 cut(s)	124, 131
TspDTI	ATGAA	1 cut(s)	10
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	7
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.