Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

22637097 .. 22637315

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGAAACACCGAGAAGCTGATGAACCAGATCATGGAGCTCAAATTCACCTCCAAGTCGCGCCAGCGCCAGTCCAGGAAGTGCTATAAGGAGGAAAAAGCAGAGAAGCTCAAGATCAAGAAGGCAATGGAGAAGGGAAACGTCGACAGTGCCCAGATTTACGTCGAGAACGCGATCCGGAAACGCATTGAGCAGATGAACTACCTTTGCCTCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

73

Amino Acids

8.54

Weight (kDa)

9.74

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	61, 173
AccIII	TCCGGA	1 cut(s)	177
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	19, 40, 109
AluI	AGCT	3 cut(s)	19, 40, 109
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	63, 69
AsuHPI	GGTGA	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	154
Bsh1236I	CGCG	2 cut(s)	61, 173
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	42, 154
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	30, 114, 174
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	61, 173
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	30, 114, 174
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	65
BstFNI	CGCG	2 cut(s)	61, 173
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	63, 69
BstKTI	GATC	3 cut(s)	33, 117, 177
BstMBI	GATC	3 cut(s)	30, 114, 174
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	2 cut(s)	61, 173
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	2 cut(s)	63, 69
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	3 cut(s)	19, 40, 109
CviKI_1	RGCY	3 cut(s)	19, 40, 109
DpnI	GATC	3 cut(s)	32, 116, 176
DpnII	GATC	3 cut(s)	30, 114, 174
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 87
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	217
GlaI	GCGC	2 cut(s)	62, 68
HaeII	RGCGCY	1 cut(s)	70
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	2 cut(s)	63, 69
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	61, 67
HinP1I	GCGC	2 cut(s)	61, 67
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	112, 118, 166, 178
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	2 cut(s)	146, 167
HpyAV	CCTTC	2 cut(s)	115, 127
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	141, 162
HpySE526I	ACGT	2 cut(s)	141, 162
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	61, 67
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	30, 114, 174
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	41, 61, 77, 83, 88, 167, 191
MaeI	CTAG	1 cut(s)	217
MaeII	ACGT	2 cut(s)	141, 162
MalI	GATC	3 cut(s)	32, 116, 176
MboI	GATC	3 cut(s)	30, 114, 174
MhlI	GDGCHC	2 cut(s)	42, 154
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	2 cut(s)	61, 85
MroI	TCCGGA	1 cut(s)	177
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	61, 173
NdeII	GATC	3 cut(s)	30, 114, 174
NlaIII	CATG	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	30, 114, 174
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	42, 154
SetI	ASST	7 cut(s)	21, 42, 53, 111, 144, 165, 207
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	217
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	144, 165
TaqI	TCGA	2 cut(s)	144, 165
TasI	AATT	1 cut(s)	44
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	38, 212
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.