Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

61388033 .. 61388449

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG433100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAACTACCTCCGCCTCGCCTCCCGCCTCGACGCCGTCGTCGCCCGCCTCGACACCCAGGCCAAGATGTCCACCATCAACAAGTCCATGGGCAACATCGTCAAATCACTCGAGTCCTCGCTCAACACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTTGAGAAGCAGTTCGTCAACATGGAGGTCCAGGCCGAGTTCATGGAGAGCTCCATGGCCGGCTCCACCTCGCTTTCCACTCCCGAAGGTGAGGTTAACAGTCTTATGCAACAGGTTGCTGATGACTATGGGCTTGAGGTCTCCGTGGGCCTGCCGCAGCCGGCGGCCCATGCCGTGCCCACCAAGGAGGCCGATAAGGTCGACGAGGATGACCTTTCCAGGAGGCTTGCGGAGCTTAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

138

Amino Acids

15.06

Weight (kDa)

4.7

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	6 cut(s)	13, 25, 46, 320, 329, 395
AcoI	YGGCCR	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	401
AjnI	CCWGG	3 cut(s)	57, 195, 383
AluBI	AGCT	2 cut(s)	216, 400
AluI	AGCT	2 cut(s)	216, 400
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	146, 310
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	6 cut(s)	60, 198, 222, 313, 330, 354
ApeKI	GCWGC	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	193, 313, 331
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	20, 323
BciT130I	CCWGG	3 cut(s)	59, 197, 385
BcoDI	GTCTC	2 cut(s)	146, 310
BfaI	CTAG	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	3 cut(s)	320, 323, 330
BlsI	GCNGC	3 cut(s)	321, 324, 331
Bme1390I	CCNGG	3 cut(s)	59, 197, 385
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	193, 313, 331
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	59, 197, 385
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	2 cut(s)	146, 310
BsaJI	CCNNGG	6 cut(s)	57, 87, 156, 219, 309, 348
BsaWI	WCCGGW	1 cut(s)	128
Bse118I	RCCGGY	2 cut(s)	224, 325
BseBI	CCWGG	3 cut(s)	59, 197, 385
BseDI	CCNNGG	6 cut(s)	57, 87, 156, 219, 309, 348
BseGI	GGATG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	6 cut(s)	62, 200, 224, 315, 332, 356
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	129, 225, 326
BsmAI	GTCTC	2 cut(s)	146, 310
BsnI	GGCC	6 cut(s)	62, 200, 224, 315, 332, 356
Bso31I	GGTCTC	2 cut(s)	146, 310
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	218, 345
Bsp19I	CCATGG	3 cut(s)	87, 156, 219
BspACI	CCGC	6 cut(s)	13, 25, 46, 320, 329, 395
BspANI	GGCC	6 cut(s)	62, 200, 224, 315, 332, 356
BspLI	GGNNCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	146, 310
BsrFI	RCCGGY	2 cut(s)	224, 325
BssAI	RCCGGY	2 cut(s)	224, 325
BssECI	CCNNGG	6 cut(s)	57, 87, 156, 219, 309, 348
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	4 cut(s)	87, 156, 219, 348
Bst2UI	CCWGG	3 cut(s)	59, 197, 385
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	5 cut(s)	46, 226, 317, 327, 393
BstDSI	CCRYGG	4 cut(s)	87, 156, 219, 309
BstF5I	GGATG	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	146, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 335, 397
BstNI	CCWGG	3 cut(s)	59, 197, 385
BstSCI	CCNGG	3 cut(s)	57, 195, 383
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	334
BsuRI	GGCC	6 cut(s)	62, 200, 224, 315, 332, 356
BtgI	CCRYGG	4 cut(s)	87, 156, 219, 309
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	5 cut(s)	46, 226, 317, 327, 393
Cfr10I	RCCGGY	2 cut(s)	224, 325
Cfr13I	GGNCC	3 cut(s)	193, 313, 331
CseI	GACGC	1 cut(s)	41
CviAII	CATG	6 cut(s)	88, 157, 187, 208, 220, 335
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	4 cut(s)	87, 156, 219, 348
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	2 cut(s)	146, 310
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	57, 195, 383
EcoT14I	CCWWGG	4 cut(s)	87, 156, 219, 348
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	4 cut(s)	87, 156, 219, 348
FaeI	CATG	6 cut(s)	91, 160, 190, 211, 223, 338
FaiI	YATR	8 cut(s)	89, 158, 188, 209, 221, 272, 294, 336
FatI	CATG	6 cut(s)	87, 156, 186, 207, 219, 334
FauI	CCCGC	2 cut(s)	32, 53
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	320, 323, 330
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	320, 323, 330
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	320, 323, 330
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	6 cut(s)	62, 200, 224, 315, 332, 356
HapII	CCGG	3 cut(s)	129, 225, 326
HgaI	GACGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	91, 160, 190, 211, 223, 338
HincII	GTYRAC	3 cut(s)	184, 262, 367
HindII	GTYRAC	3 cut(s)	184, 262, 367
HinfI	GANTC	2 cut(s)	113, 161
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	129, 225, 326
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	4 cut(s)	72, 184, 262, 367
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	139, 248
Hpy8I	GTNNAC	4 cut(s)	72, 184, 262, 367
Hpy99I	CGWCG	4 cut(s)	35, 41, 44, 371
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 335, 397
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	91, 160, 190, 211, 223, 338
KroI	GCCGGC	2 cut(s)	224, 325
KroNI	GCCGGC	2 cut(s)	226, 327
KspAI	GTTAAC	1 cut(s)	262
LmnI	GCTCC	3 cut(s)	221, 233, 397
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	408
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	218, 345
MlyI	GAGTC	2 cut(s)	122, 155
MmeI	TCCRAC	1 cut(s)	129
MroNI	GCCGGC	2 cut(s)	224, 325
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	261, 402, 415
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	3 cut(s)	129, 225, 326
MspR9I	CCNGG	3 cut(s)	59, 197, 385
MvaI	CCWGG	3 cut(s)	59, 197, 385
MwoI	GCNNNNNNNGC	3 cut(s)	41, 335, 397
NaeI	GCCGGC	2 cut(s)	226, 327
NcoI	CCATGG	3 cut(s)	87, 156, 219
NgoMIV	GCCGGC	2 cut(s)	224, 325
NlaIII	CATG	6 cut(s)	91, 160, 190, 211, 223, 338
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 48
PdiI	GCCGGC	2 cut(s)	226, 327
PdmI	GAANNNNTTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	321, 324, 331
PleI	GAGTC	2 cut(s)	121, 155
PpsI	GAGTC	2 cut(s)	121, 155
Psp124BI	GAGCTC	1 cut(s)	218
Psp6I	CCWGG	3 cut(s)	57, 195, 383
PspGI	CCWGG	3 cut(s)	57, 195, 383
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	193, 313, 331
PspXI	VCTCGAGB	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	261, 402, 415
SatI	GCNGC	3 cut(s)	320, 323, 330
Sau96I	GGNCC	3 cut(s)	193, 313, 331
SchI	GAGTC	2 cut(s)	122, 155
ScrFI	CCNGG	3 cut(s)	59, 197, 385
SduI	GDGCHC	2 cut(s)	218, 345
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	110, 299, 401
SmoI	CTYRAG	3 cut(s)	110, 299, 401
SsiI	CCGC	6 cut(s)	13, 25, 46, 320, 329, 395
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	3 cut(s)	57, 195, 383
StyI	CCWWGG	4 cut(s)	87, 156, 219, 348
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	30, 51, 111, 366
TauI	GCSGC	2 cut(s)	322, 332
Tru1I	TTAA	3 cut(s)	261, 402, 415
Tru9I	TTAA	3 cut(s)	261, 402, 415
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	17, 196
TspGWI	ACGGA	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.