Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

55831217 .. 55831810

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGAAGCTGATGGACCAGATCATGGAGCTGAAATTCACCTCCAAATCTCTCCAGCGCCAATCCCGAAAGTGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGATCAAGAAAACCATGGAGAAAGGCAACGTCGACGGCGCCCAGATCTACGCCGAGAACGCCATCCGCAAGCGCACCGAGCAAATGAACTACCTCCGCCTCGCCTCCCGCCTTGACGCCGTCGTCGCCCGCCTCGACACCCAGGCCAAGATGTCCACCATCAACAAGTCCATGGGCAACATCGTCAAATCACTCGAGTCCTCGCTCAACACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTTGAGAAGCAGTTCGTCAACATGGAGGTCCAGGCCGAGTTCATGGAGAGCTCCATGGCCTCGCTTTCCACTCCCGAAGGTGAGGTTAACAGTCTTATGCAACAGGTTGCCGATGACTATGGGCTTGAGGTCTCCGTGGGCCTGCCCCAGCCGGCGGCCCATGCCGTGCCCACCAAGGAGGCCGATAAGGTCGATGAGGCTGACCTTTCCAGGAGGCTTGCGGAGCTCAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

197

Amino Acids

22.1

Weight (kDa)

6.04

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	8 - 173	1.8e-13	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	6 cut(s)	169, 199, 211, 232, 506, 572
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	2 cut(s)	141, 219
AfiI	CCNNNNNNNGG	2 cut(s)	25, 505
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	243, 381, 560
AluBI	AGCT	4 cut(s)	10, 31, 402, 577
AluI	AGCT	4 cut(s)	10, 31, 402, 577
Alw21I	GWGCWC	2 cut(s)	404, 579
Alw26I	GTCTC	2 cut(s)	332, 487
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	6 cut(s)	246, 384, 408, 490, 507, 531
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	3 cut(s)	60, 143, 177
AspS9I	GGNCC	4 cut(s)	16, 379, 490, 508
AsuHPI	GGTGA	2 cut(s)	31, 443
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	16, 379
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	404, 579
Bbv12I	GWGCWC	2 cut(s)	404, 579
BccI	CCATC	3 cut(s)	7, 173, 269
BceAI	ACGGC	3 cut(s)	154, 206, 500
BciT130I	CCWGG	3 cut(s)	245, 383, 562
BcoDI	GTCTC	2 cut(s)	332, 487
BfaI	CTAG	1 cut(s)	585
BfoI	RGCGCY	2 cut(s)	61, 144
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	245, 383, 562
Bme18I	GGWCC	2 cut(s)	16, 379
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	4 cut(s)	16, 379, 490, 508
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	3 cut(s)	245, 383, 562
BpmI	CTGGAG	2 cut(s)	38, 308
BpuEI	CTTGAG	2 cut(s)	497, 563
BsaHI	GRCGYC	2 cut(s)	141, 219
BsaI	GGTCTC	2 cut(s)	332, 487
BsaJI	CCNNGG	7 cut(s)	117, 243, 273, 342, 405, 486, 525
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 505
Bse118I	RCCGGY	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	245, 383, 562
BseDI	CCNNGG	7 cut(s)	117, 243, 273, 342, 405, 486, 525
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	25, 505
BseSI	GKGCMC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	498
BshFI	GGCC	6 cut(s)	248, 386, 410, 492, 509, 533
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	404, 579
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	315, 503
BslI	CCNNNNNNNGG	2 cut(s)	25, 505
BsmAI	GTCTC	2 cut(s)	332, 487
BsnI	GGCC	6 cut(s)	248, 386, 410, 492, 509, 533
Bso31I	GGTCTC	2 cut(s)	332, 487
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	404, 522, 579
Bsp143I	GATC	3 cut(s)	21, 105, 147
Bsp19I	CCATGG	4 cut(s)	117, 273, 342, 405
BspACI	CCGC	6 cut(s)	169, 199, 211, 232, 506, 572
BspANI	GGCC	6 cut(s)	248, 386, 410, 492, 509, 533
BspLI	GGNNCC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	2 cut(s)	332, 487
BsrFI	RCCGGY	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	7 cut(s)	117, 243, 273, 342, 405, 486, 525
BssMI	GATC	3 cut(s)	21, 105, 147
BssNI	GRCGYC	2 cut(s)	141, 219
BssT1I	CCWWGG	5 cut(s)	117, 273, 342, 405, 525
Bst2UI	CCWGG	3 cut(s)	245, 383, 562
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	2 cut(s)	141, 219
BstC8I	GCNNGC	5 cut(s)	173, 232, 494, 504, 570
BstDSI	CCRYGG	5 cut(s)	117, 273, 342, 405, 486
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	2 cut(s)	61, 144
BstHHI	GCGC	3 cut(s)	60, 143, 177
BstKTI	GATC	3 cut(s)	24, 108, 150
BstMAI	GTCTC	2 cut(s)	332, 487
BstMBI	GATC	3 cut(s)	21, 105, 147
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 181, 227, 512, 574
BstNI	CCWGG	3 cut(s)	245, 383, 562
BstSCI	CCNGG	3 cut(s)	243, 381, 560
BstSLI	GKGCMC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	6 cut(s)	248, 386, 410, 492, 509, 533
BtgI	CCRYGG	5 cut(s)	117, 273, 342, 405, 486
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	5 cut(s)	173, 232, 494, 504, 570
CfoI	GCGC	3 cut(s)	60, 143, 177
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	16, 379, 490, 508
CseI	GACGC	1 cut(s)	227
CviAII	CATG	8 cut(s)	25, 118, 274, 343, 373, 394, 406, 512
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	3 cut(s)	23, 107, 149
DpnII	GATC	3 cut(s)	21, 105, 147
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	188
Ecl136II	GAGCTC	2 cut(s)	402, 577
Eco130I	CCWWGG	5 cut(s)	117, 273, 342, 405, 525
Eco24I	GRGCYC	2 cut(s)	404, 579
Eco31I	GGTCTC	2 cut(s)	332, 487
Eco47I	GGWCC	2 cut(s)	16, 379
Eco53kI	GAGCTC	2 cut(s)	402, 577
Eco88I	CYCGRG	1 cut(s)	296
EcoICRI	GAGCTC	2 cut(s)	402, 577
EcoRII	CCWGG	3 cut(s)	243, 381, 560
EcoT14I	CCWWGG	5 cut(s)	117, 273, 342, 405, 525
EcoT38I	GRGCYC	2 cut(s)	404, 579
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	5 cut(s)	117, 273, 342, 405, 525
FaeI	CATG	8 cut(s)	28, 121, 277, 346, 376, 397, 409, 515
FatI	CATG	8 cut(s)	24, 117, 273, 342, 372, 393, 405, 511
FauI	CCCGC	2 cut(s)	218, 239
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	404, 579
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	3 cut(s)	59, 142, 176
GluI	GCNGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	2 cut(s)	38, 308
HaeII	RGCGCY	2 cut(s)	61, 144
HaeIII	GGCC	6 cut(s)	248, 386, 410, 492, 509, 533
HapII	CCGG	2 cut(s)	315, 503
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	60, 143, 177
Hin1I	GRCGYC	2 cut(s)	141, 219
Hin1II	CATG	8 cut(s)	28, 121, 277, 346, 376, 397, 409, 515
Hin6I	GCGC	3 cut(s)	58, 141, 175
HinP1I	GCGC	3 cut(s)	58, 141, 175
HincII	GTYRAC	3 cut(s)	136, 370, 439
HindII	GTYRAC	3 cut(s)	136, 370, 439
HinfI	GANTC	2 cut(s)	299, 347
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	315, 503
HphI	GGTGA	2 cut(s)	31, 443
Hpy166II	GTNNAC	4 cut(s)	136, 258, 370, 439
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	4 cut(s)	66, 109, 325, 425
Hpy8I	GTNNAC	4 cut(s)	136, 258, 370, 439
Hpy99I	CGWCG	4 cut(s)	137, 140, 227, 230
HpyAV	CCTTC	2 cut(s)	73, 422
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 181, 227, 512, 574
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	2 cut(s)	141, 219
Hsp92II	CATG	8 cut(s)	28, 121, 277, 346, 376, 397, 409, 515
HspAI	GCGC	3 cut(s)	58, 141, 175
KasI	GGCGCC	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	21, 105, 147
LmnI	GCTCC	3 cut(s)	28, 407, 574
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	132
MalI	GATC	3 cut(s)	23, 107, 149
MboI	GATC	3 cut(s)	21, 105, 147
MboII	GAAGA	3 cut(s)	95, 115, 340
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	404, 522, 579
MluCI	AATT	2 cut(s)	35, 98
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	308, 341
MmeI	TCCRAC	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	438, 592
MspI	CCGG	2 cut(s)	315, 503
MspR9I	CCNGG	3 cut(s)	245, 383, 562
MvaI	CCWGG	3 cut(s)	245, 383, 562
MwoI	GCNNNNNNNGC	5 cut(s)	161, 181, 227, 512, 574
NaeI	GCCGGC	1 cut(s)	504
NarI	GGCGCC	1 cut(s)	141
NcoI	CCATGG	4 cut(s)	117, 273, 342, 405
NdeII	GATC	3 cut(s)	21, 105, 147
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	8 cut(s)	28, 121, 277, 346, 376, 397, 409, 515
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	3 cut(s)	118, 181, 412
PaeR7I	CTCGAG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	2 cut(s)	307, 341
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	2 cut(s)	307, 341
Psp124BI	GAGCTC	2 cut(s)	404, 579
Psp6I	CCWGG	3 cut(s)	243, 381, 560
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	3 cut(s)	243, 381, 560
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	4 cut(s)	16, 379, 490, 508
PspXI	VCTCGAGB	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	221
SacI	GAGCTC	2 cut(s)	404, 579
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	438, 592
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	21, 105, 147
Sau96I	GGNCC	4 cut(s)	16, 379, 490, 508
SchI	GAGTC	2 cut(s)	308, 341
ScrFI	CCNGG	3 cut(s)	245, 383, 562
SduI	GDGCHC	3 cut(s)	404, 522, 579
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	296
SgrDI	CGTCGACG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	16, 379
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	296, 476, 578
SmoI	CTYRAG	3 cut(s)	296, 476, 578
Sse9I	AATT	2 cut(s)	35, 98
SsiI	CCGC	6 cut(s)	169, 199, 211, 232, 506, 572
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	2 cut(s)	404, 579
StyD4I	CCNGG	3 cut(s)	243, 381, 560
StyI	CCWWGG	5 cut(s)	117, 273, 342, 405, 525
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	135, 237, 297, 543
TasI	AATT	2 cut(s)	35, 98
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	438, 592
Tru9I	TTAA	2 cut(s)	438, 592
TspDTI	ATGAA	2 cut(s)	203, 382
TspGWI	ACGGA	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	16, 379
XapI	RAATTY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.