Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Forward (+)

27473763 .. 27475122

Gene Structure 1360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTAACACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTTACGTCAAAGTCTCTGCAAAGGCAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAGAAGGCTATCGAGAAGGGTAATATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGTAAGCGTAGCGAGCAGATGAACTATCTCCGTCTCGCTTCTCGCCTTGACGCTGTTGTTGCTCGTCTTGATACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAATCCCTTGAGTCTTCTCTTGCCACAGGGAATCTACAGAAGATGTCAGAGACAATGGATTCATTCGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGCTGGTTCAACTTCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTTATGCAGCAGGTGGCAGATGACTATGGTTTGGAAGTCTCTGTGGGGCTTCCTCAGCCTGCTGGTCATGCCATTCCTACTAAGACTGAGGAGAAAGTCGATGAGGATGATTTGTCGAGGAGGCTTGCGGAGCTTAAAGCCAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

203

Amino Acids

22.69

Weight (kDa)

6.66

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	12 - 173	9.2e-14	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	43, 112, 426
AluBI	AGCT	3 cut(s)	19, 395, 595
AluI	AGCT	3 cut(s)	19, 395, 595
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	4 cut(s)	63, 215, 341, 505
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	127, 265
AvaII	GGWCC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	140, 278
BcoDI	GTCTC	4 cut(s)	63, 215, 341, 505
BfmI	CTRYAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	151, 574
BseMII	CTCAG	5 cut(s)	156, 266, 387, 530, 540
BseRI	GAGGAG	2 cut(s)	566, 595
BseXI	GCAGC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	154
BsmAI	GTCTC	4 cut(s)	63, 215, 341, 505
BsmBI	CGTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	590
BspCNI	CTCAG	5 cut(s)	157, 265, 388, 529, 541
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	164
BssMI	GATC	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	191, 522, 588
BstDEI	CTNAG	7 cut(s)	165, 252, 258, 396, 516, 543, 549
BstF5I	GGATG	2 cut(s)	151, 574
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	4 cut(s)	63, 215, 341, 505
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 517, 530, 592
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	151, 574
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	191, 522, 588
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	236
CviAII	CATG	4 cut(s)	283, 382, 403, 530
DdeI	CTNAG	7 cut(s)	165, 252, 258, 396, 516, 543, 549
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	4 cut(s)	286, 385, 406, 533
FaiI	YATR	8 cut(s)	143, 284, 383, 404, 416, 467, 489, 531
FatI	CATG	4 cut(s)	282, 381, 402, 529
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	2 cut(s)	158, 581
Fsp4HI	GCNGC	1 cut(s)	470
GluI	GCNGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	286, 385, 406, 533
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	25, 308, 328, 356
HphI	GGTGA	2 cut(s)	127, 265
Hpy166II	GTNNAC	3 cut(s)	379, 438, 457
Hpy188I	TCNGA	3 cut(s)	30, 156, 346
Hpy188III	TCNNGA	4 cut(s)	130, 245, 364, 443
Hpy8I	GTNNAC	3 cut(s)	379, 438, 457
HpyAV	CCTTC	5 cut(s)	82, 106, 115, 127, 440
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	64, 469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 517, 530, 592
HpyF3I	CTNAG	7 cut(s)	165, 252, 258, 396, 516, 543, 549
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	286, 385, 406, 533
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	7 cut(s)	239, 309, 405, 456, 458, 510, 534
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	104, 130, 303, 349
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	44, 107
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	379, 525, 544, 559, 573, 576, 599
MseI	TTAA	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 517, 530, 592
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	4 cut(s)	286, 385, 406, 533
PaqCI	CACCTGC	1 cut(s)	463
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	25, 328, 356
PkrI	GCNGC	1 cut(s)	471
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	21, 53, 117, 390, 397, 477, 597
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	44, 107
SsiI	CCGC	1 cut(s)	590
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	5 cut(s)	36, 129, 363, 561, 578
TasI	AATT	2 cut(s)	44, 107
TfiI	GAWTC	3 cut(s)	25, 328, 356
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	5 cut(s)	38, 212, 348, 391, 420
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.