Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

7676214 .. 7676828

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1056000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCACAAAAGCTCGGATCTTTCTTCCTCCTATCAGAAAACCAAAACCCTAGAAAATCAAATTCCCCCAAAAAAAATCCCCAAATTCCGCCATGGGAAACACCGAGAAGGTGATGAACCAGATCATGGAGCTCAAATTCACCTCCAAGTCGCTCCAGCGCAGTCCAGGAATTGCGAGAAGGAGGAGAAAGACGAGAAGCTCAAGATCAAGAAGGTAATGGATAAGGGAAACGTCGACAACGCCCGGATTTCCACCGAGAACGCGATCCGGAAGTGCACTGAGCAGATGAACTACCTCCGCCTCGCCTCACGGCTCGACAACGTGGTGACGCGGCTTGACACCCAGGCCAAGATGTTCACCATCAACAAGTCAATAGGCAATATCGTCAAATCGCTCGAGTCGTCGCTGGCCACTGGAAACCTCCAGAAGATGTCGAAGACCATGGACTCGTTCGAGAAGCAGTTTGTGAACATGGAGGTCCAGGCCAAGTTCATGGAGACCGCCATGGCTGGCTCCACCTCGCTTTCGACACTGGAAGGTGAGGTCAATAACTTGATGCAACAGGTTGTGGATGATTTGGGTTTCATTTTGCGATATTATCAATATTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

205

Amino Acids

23.32

Weight (kDa)

9.19

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	2 cut(s)	263, 331
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	4 cut(s)	88, 298, 331, 501
AclWI	GGATC	2 cut(s)	24, 259
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	3 cut(s)	60, 83, 135
AfiI	CCNNNNNNNGG	1 cut(s)	125
AjnI	CCWGG	3 cut(s)	164, 342, 480
AluBI	AGCT	3 cut(s)	12, 131, 199
AluI	AGCT	3 cut(s)	12, 131, 199
Alw21I	GWGCWC	2 cut(s)	133, 278
Alw26I	GTCTC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	24, 259
Ama87I	CYCGRG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	3 cut(s)	345, 408, 483
ApaLI	GTGCAC	1 cut(s)	274
ApoI	RAATTY	3 cut(s)	60, 83, 135
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	5 cut(s)	122, 131, 337, 349, 551
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	133, 278
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	166, 344, 482
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	4 cut(s)	166, 244, 344, 482
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	4 cut(s)	166, 244, 344, 482
BmsI	GCATC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	138, 407
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	244
Bsa29I	ATCGAT	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	91, 342, 441, 504
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	418, 537
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	166, 344, 482
BseCI	ATCGAT	1 cut(s)	610
BseDI	CCNNGG	4 cut(s)	91, 342, 441, 504
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	418, 537
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	263, 331
BshFI	GGCC	3 cut(s)	347, 410, 485
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	2 cut(s)	133, 278
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	244, 268
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	347, 410, 485
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	133, 278
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	16, 121, 204, 264
Bsp19I	CCATGG	3 cut(s)	91, 441, 504
BspACI	CCGC	4 cut(s)	88, 298, 331, 501
BspANI	GGCC	3 cut(s)	347, 410, 485
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	263, 331
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	2 cut(s)	24, 259
BspTNI	GGTCTC	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	418, 537
BssECI	CCNNGG	4 cut(s)	91, 342, 441, 504
BssMI	GATC	4 cut(s)	16, 121, 204, 264
BssT1I	CCWWGG	3 cut(s)	91, 441, 504
Bst2UI	CCWGG	3 cut(s)	166, 344, 482
BstC8I	GCNNGC	2 cut(s)	408, 511
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	3 cut(s)	91, 441, 504
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	263, 331
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	4 cut(s)	19, 124, 207, 267
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	16, 121, 204, 264
BstNI	CCWGG	3 cut(s)	166, 344, 482
BstSCI	CCNGG	4 cut(s)	164, 242, 342, 480
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	2 cut(s)	263, 331
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	347, 410, 485
BsuTUI	ATCGAT	1 cut(s)	610
BtgI	CCRYGG	3 cut(s)	91, 441, 504
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	276, 411, 530
Cac8I	GCNNGC	2 cut(s)	408, 511
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	610
CseI	GACGC	1 cut(s)	337
CviAII	CATG	6 cut(s)	92, 125, 442, 472, 493, 505
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	4 cut(s)	18, 123, 206, 266
DpnII	GATC	4 cut(s)	16, 121, 204, 264
EaeI	YGGCCR	1 cut(s)	408
EciI	GGCGGA	2 cut(s)	77, 287
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	3 cut(s)	91, 441, 504
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	131
EcoRII	CCWGG	3 cut(s)	164, 342, 480
EcoT14I	CCWWGG	3 cut(s)	91, 441, 504
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	91, 441, 504
FaeI	CATG	6 cut(s)	95, 128, 445, 475, 496, 508
FaiI	YATR	6 cut(s)	93, 126, 443, 473, 494, 506
FatI	CATG	6 cut(s)	91, 124, 441, 471, 492, 504
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	2 cut(s)	138, 407
HaeIII	GGCC	3 cut(s)	347, 410, 485
HapII	CCGG	2 cut(s)	244, 268
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	6 cut(s)	95, 128, 445, 475, 496, 508
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	398, 446
HpaII	CCGG	2 cut(s)	244, 268
HphI	GGTGA	5 cut(s)	122, 131, 337, 349, 551
Hpy166II	GTNNAC	4 cut(s)	235, 276, 357, 469
Hpy188I	TCNGA	2 cut(s)	16, 36
Hpy188III	TCNNGA	5 cut(s)	202, 208, 268, 424, 454
Hpy8I	GTNNAC	4 cut(s)	235, 276, 357, 469
Hpy99I	CGWCG	2 cut(s)	236, 406
HpyAV	CCTTC	4 cut(s)	101, 172, 205, 530
HpyCH4IV	ACGT	2 cut(s)	231, 321
HpyCH4V	TGCA	3 cut(s)	4, 276, 559
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	2 cut(s)	231, 321
Hsp92II	CATG	6 cut(s)	95, 128, 445, 475, 496, 508
HspAI	GCGC	1 cut(s)	158
Kpn2I	TCCGGA	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	16, 121, 204, 264
LmnI	GCTCC	3 cut(s)	128, 157, 518
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	231, 321
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	18, 123, 206, 266
MboI	GATC	4 cut(s)	16, 121, 204, 264
MboII	GAAGA	3 cut(s)	15, 439, 448
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	133, 278
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	4 cut(s)	60, 83, 135, 169
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	2 cut(s)	407, 440
Mox20I	TGGCCA	1 cut(s)	410
MroI	TCCGGA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	2 cut(s)	244, 268
MspR9I	CCNGG	4 cut(s)	166, 244, 344, 482
MvaI	CCWGG	3 cut(s)	166, 344, 482
MvnI	CGCG	2 cut(s)	263, 331
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	3 cut(s)	91, 441, 504
NdeII	GATC	4 cut(s)	16, 121, 204, 264
NlaIII	CATG	6 cut(s)	95, 128, 445, 475, 496, 508
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	2 cut(s)	406, 440
PpsI	GAGTC	2 cut(s)	406, 440
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	164, 342, 480
PspGI	CCWGG	3 cut(s)	164, 342, 480
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	478
PspXI	VCTCGAGB	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	4 cut(s)	16, 121, 204, 264
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	407, 440
ScrFI	CCNGG	4 cut(s)	166, 244, 344, 482
SduI	GDGCHC	2 cut(s)	133, 278
SfaNI	GCATC	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	200, 395
SmoI	CTYRAG	2 cut(s)	200, 395
Sse9I	AATT	4 cut(s)	60, 83, 135, 169
SsiI	CCGC	4 cut(s)	88, 298, 331, 501
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	4 cut(s)	164, 242, 342, 480
StyI	CCWWGG	3 cut(s)	91, 441, 504
TaiI	ACGT	2 cut(s)	234, 324
TaqI	TCGA	7 cut(s)	234, 315, 396, 434, 453, 527, 610
TasI	AATT	4 cut(s)	60, 83, 135, 169
TauI	GCSGC	1 cut(s)	334
TscAI	CASTG	3 cut(s)	283, 418, 537
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	129, 302, 481, 574
TspRI	CASTG	3 cut(s)	283, 418, 537
Van91I	CCANNNNNTGG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	3 cut(s)	60, 83, 135
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.