Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

62857439 .. 62857846

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG423200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAACTACCTCCGCCTCGCCTCCCGCCTTGACGCCGTCGTCGCCCGCCTCGACACCCAGGCCAAGATGTCCACCATCAACAAGTCCATGGGCAACATCGTCAAATCACTCGAGTCCTCGCTCAACACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTTGAGAAGCAGTTCGTCAACATGGAGGTCCAGGCCGAGTTCATGGAGAGCTCCATGGCCTCGCTTTCCACTCCCGAAGGTGAGGTTAACAGTCTTATGCAACAGGTTGCCGATGACTATGGGCTTGAGGTCTCCGTGGGCCTGCCCCAGCCGGCGGCCCATGCCGTGCCCACCAAGGAGGCCGATAAGGTCGATGAGGCTGACCTTTCCAGGAGGCTTGCGGAGCTCAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

135

Amino Acids

14.77

Weight (kDa)

4.79

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	7 - 111	3.7e-06	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AciI	CCGC	5 cut(s)	13, 25, 46, 320, 386
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	57, 195, 374
AluBI	AGCT	2 cut(s)	216, 391
AluI	AGCT	2 cut(s)	216, 391
Alw21I	GWGCWC	2 cut(s)	218, 393
Alw26I	GTCTC	2 cut(s)	146, 301
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	6 cut(s)	60, 198, 222, 304, 321, 345
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	193, 304, 322
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	218, 393
Bbv12I	GWGCWC	2 cut(s)	218, 393
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	20, 314
BciT130I	CCWGG	3 cut(s)	59, 197, 376
BcoDI	GTCTC	2 cut(s)	146, 301
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	59, 197, 376
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	193, 304, 322
BmrFI	CCNGG	3 cut(s)	59, 197, 376
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	311, 377
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	2 cut(s)	146, 301
BsaJI	CCNNGG	6 cut(s)	57, 87, 156, 219, 300, 339
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	59, 197, 376
BseDI	CCNNGG	6 cut(s)	57, 87, 156, 219, 300, 339
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	6 cut(s)	62, 200, 224, 306, 323, 347
BsiHKAI	GWGCWC	2 cut(s)	218, 393
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	129, 317
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	146, 301
BsnI	GGCC	6 cut(s)	62, 200, 224, 306, 323, 347
Bso31I	GGTCTC	2 cut(s)	146, 301
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	218, 336, 393
Bsp19I	CCATGG	3 cut(s)	87, 156, 219
BspACI	CCGC	5 cut(s)	13, 25, 46, 320, 386
BspANI	GGCC	6 cut(s)	62, 200, 224, 306, 323, 347
BspTNI	GGTCTC	2 cut(s)	146, 301
BsrFI	RCCGGY	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	6 cut(s)	57, 87, 156, 219, 300, 339
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	4 cut(s)	87, 156, 219, 339
Bst2UI	CCWGG	3 cut(s)	59, 197, 376
Bst4CI	ACNGT	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	46, 308, 318, 384
BstDSI	CCRYGG	4 cut(s)	87, 156, 219, 300
BstMAI	GTCTC	2 cut(s)	146, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 326, 388
BstNI	CCWGG	3 cut(s)	59, 197, 376
BstSCI	CCNGG	3 cut(s)	57, 195, 374
BstSLI	GKGCMC	1 cut(s)	336
BsuRI	GGCC	6 cut(s)	62, 200, 224, 306, 323, 347
BtgI	CCRYGG	4 cut(s)	87, 156, 219, 300
Cac8I	GCNNGC	4 cut(s)	46, 308, 318, 384
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	193, 304, 322
CseI	GACGC	1 cut(s)	41
CviAII	CATG	6 cut(s)	88, 157, 187, 208, 220, 326
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	216, 391
Eco130I	CCWWGG	4 cut(s)	87, 156, 219, 339
Eco24I	GRGCYC	2 cut(s)	218, 393
Eco31I	GGTCTC	2 cut(s)	146, 301
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	2 cut(s)	216, 391
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	2 cut(s)	216, 391
EcoRII	CCWGG	3 cut(s)	57, 195, 374
EcoT14I	CCWWGG	4 cut(s)	87, 156, 219, 339
EcoT38I	GRGCYC	2 cut(s)	218, 393
ErhI	CCWWGG	4 cut(s)	87, 156, 219, 339
FaeI	CATG	6 cut(s)	91, 160, 190, 211, 223, 329
FaiI	YATR	8 cut(s)	89, 158, 188, 209, 221, 263, 285, 327
FatI	CATG	6 cut(s)	87, 156, 186, 207, 219, 325
FauI	CCCGC	2 cut(s)	32, 53
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	2 cut(s)	218, 393
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	6 cut(s)	62, 200, 224, 306, 323, 347
HapII	CCGG	2 cut(s)	129, 317
HgaI	GACGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	91, 160, 190, 211, 223, 329
HincII	GTYRAC	2 cut(s)	184, 253
HindII	GTYRAC	2 cut(s)	184, 253
HinfI	GANTC	2 cut(s)	113, 161
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	129, 317
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	72, 184, 253
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	139, 239
Hpy8I	GTNNAC	3 cut(s)	72, 184, 253
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 326, 388
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	91, 160, 190, 211, 223, 329
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	221, 388
MaeI	CTAG	1 cut(s)	399
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	218, 336, 393
MlyI	GAGTC	2 cut(s)	122, 155
MmeI	TCCRAC	1 cut(s)	129
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	252, 406
MspI	CCGG	2 cut(s)	129, 317
MspR9I	CCNGG	3 cut(s)	59, 197, 376
MvaI	CCWGG	3 cut(s)	59, 197, 376
MwoI	GCNNNNNNNGC	3 cut(s)	41, 326, 388
NaeI	GCCGGC	1 cut(s)	318
NcoI	CCATGG	3 cut(s)	87, 156, 219
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	6 cut(s)	91, 160, 190, 211, 223, 329
NmeAIII	GCCGAG	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	121, 155
PpsI	GAGTC	2 cut(s)	121, 155
Psp124BI	GAGCTC	2 cut(s)	218, 393
Psp6I	CCWGG	3 cut(s)	57, 195, 374
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	57, 195, 374
PspPI	GGNCC	3 cut(s)	193, 304, 322
PspXI	VCTCGAGB	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	35
SacI	GAGCTC	2 cut(s)	218, 393
SaqAI	TTAA	2 cut(s)	252, 406
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	3 cut(s)	193, 304, 322
SchI	GAGTC	2 cut(s)	122, 155
ScrFI	CCNGG	3 cut(s)	59, 197, 376
SduI	GDGCHC	3 cut(s)	218, 336, 393
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	110, 290, 392
SmoI	CTYRAG	3 cut(s)	110, 290, 392
SsiI	CCGC	5 cut(s)	13, 25, 46, 320, 386
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	2 cut(s)	218, 393
StyD4I	CCNGG	3 cut(s)	57, 195, 374
StyI	CCWWGG	4 cut(s)	87, 156, 219, 339
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	3 cut(s)	51, 111, 357
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	252, 406
Tru9I	TTAA	2 cut(s)	252, 406
TspDTI	ATGAA	2 cut(s)	17, 196
TspGWI	ACGGA	1 cut(s)	289
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.