FvH4_1g06550

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006255
Physical Location & Seq
Forward (+)
3455614 .. 3456539
926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06550.t1

Sequence Viewer

Length: 648 bp
ATGTTCTCAAGTCCCCTATCCATGGGAAACACCGAGAAGAAGTTGATGAACCAAATAGTGCAGCTCAAAATCACGTCCAAAACCCTCGCACGCCAAGCCAAAAGATGCGTCAAGGAAGAGAAATCCGAGAAGCTCAAAATCAAAAAGGCCATGGAGAAAGGCAACTTCGACGGCGCTCGTATCTATTCCGAGAACTCAGTCCGGAAGCGCACCGAACAACTCAACTATCTCCGACTATCTTCCCGCCTCGAAGCCGTCGCAGCTCGTCTCGACACTCAGGCCAAGATGAACACGATATCCAAGTCGATGCGCAGCATTGTCACGTCACTCGAGTCCTCCTTGGCCACCGGAAATCTCCAGAGGATGTCGGAGACGATGGAGAGGTTTGAGAATCAGTTTGTCAGCATGGAGGTTCAGGCTGAATTCACGGAGAATGCTATGGCCGGGTCGACGTCGCTTTCGACACCGGAAGAGGAGGTTAACAGTCTCATGCAGCAAGTTGCGGATGATTACGGGCTTGAGGTGTCTGTGGGAATGCCTCGGCTGGTTGGTCAGGCCGTGAAGATGGAAGAAGGTGAAAAGGAAGAAGAGGATGATGAGAATGACCTTTCCAAGAGGCTTGCGGAGCTCAGGGCTAGGGGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

5.88

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 18 - 183 4.4e-09 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 455
Acc16I TGCGCA 1 cut(s) 311
AccI GTMKAC 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 3 cut(s) 244, 503, 623
AcoI YGGCCR 2 cut(s) 342, 441
AcsI RAATTY 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 22
AjiI CACGTC 2 cut(s) 75, 324
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 64, 133, 263, 628
AluI AGCT 4 cut(s) 64, 133, 263, 628
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 3 cut(s) 272, 365, 491
Ama87I CYCGRG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 5 cut(s) 147, 279, 342, 441, 555
ApeKI GCWGC 4 cut(s) 61, 260, 312, 493
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 442, 474
AspLEI GCGC 3 cut(s) 176, 210, 312
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 344
BanII GRGCYC 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 4 cut(s) 73, 272, 324, 505
BccI CCATC 2 cut(s) 370, 559
BceAI ACGGC 3 cut(s) 187, 239, 542
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 3 cut(s) 272, 365, 491
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 4 cut(s) 62, 261, 313, 494
BlsI GCNGC 4 cut(s) 63, 262, 314, 495
Bme1390I CCNGG 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 2 cut(s) 75, 324
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 2 cut(s) 95, 297
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 4 cut(s) 21, 150, 339, 539
BsaWI WCCGGW 3 cut(s) 201, 347, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 21, 150, 339, 539
BseGI GGATG 3 cut(s) 369, 511, 598
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 3 cut(s) 210, 290, 643
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 4 cut(s) 73, 272, 324, 505
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 5 cut(s) 149, 281, 344, 443, 557
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 4 cut(s) 202, 348, 444, 467
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 272, 365, 491
BsmBI CGTCTC 2 cut(s) 272, 365
BsmI GAATGC 2 cut(s) 439, 540
BsnI GGCC 5 cut(s) 149, 281, 344, 443, 557
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 630
Bsp13I TCCGGA 1 cut(s) 201
Bsp19I CCATGG 2 cut(s) 21, 150
BspACI CCGC 3 cut(s) 244, 503, 623
BspANI GGCC 5 cut(s) 149, 281, 344, 443, 557
BspCNI CTCAG 3 cut(s) 209, 289, 642
BspEI TCCGGA 1 cut(s) 201
BssECI CCNNGG 4 cut(s) 21, 150, 339, 539
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 3 cut(s) 21, 150, 339
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 3 cut(s) 111, 465, 582
BstACI GRCGYC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 91, 621
BstDEI CTNAG 4 cut(s) 196, 276, 629, 645
BstDSI CCRYGG 2 cut(s) 21, 150
BstF5I GGATG 3 cut(s) 369, 511, 598
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 3 cut(s) 176, 210, 312
BstMAI GTCTC 3 cut(s) 272, 365, 491
BstMWI GCNNNNNNNGC 3 cut(s) 95, 260, 625
BstSCI CCNGG 1 cut(s) 443
BstV1I GCAGC 4 cut(s) 73, 272, 324, 505
BsuRI GGCC 5 cut(s) 149, 281, 344, 443, 557
BtgI CCRYGG 2 cut(s) 21, 150
BtrI CACGTC 2 cut(s) 75, 324
BtsCI GGATG 3 cut(s) 369, 511, 598
Cac8I GCNNGC 2 cut(s) 91, 621
CfoI GCGC 3 cut(s) 176, 210, 312
CseI GACGC 1 cut(s) 97
CviAII CATG 4 cut(s) 22, 151, 406, 490
DdeI CTNAG 4 cut(s) 196, 276, 629, 645
EaeI YGGCCR 2 cut(s) 342, 441
Eam1104I CTCTTC 3 cut(s) 111, 465, 582
EarI CTCTTC 3 cut(s) 111, 465, 582
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 3 cut(s) 21, 150, 339
Eco24I GRGCYC 1 cut(s) 630
Eco32I GATATC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 422
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 21, 150, 339
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 3 cut(s) 21, 150, 339
Esp3I CGTCTC 2 cut(s) 272, 365
FaeI CATG 4 cut(s) 25, 154, 409, 493
FaiI YATR 5 cut(s) 23, 152, 407, 440, 491
FatI CATG 4 cut(s) 21, 150, 405, 489
FauI CCCGC 1 cut(s) 251
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 4 cut(s) 62, 261, 313, 494
FokI GGATG 3 cut(s) 376, 518, 605
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 4 cut(s) 62, 261, 313, 494
FspBI CTAG 1 cut(s) 636
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 3 cut(s) 175, 209, 311
GluI GCNGC 4 cut(s) 62, 261, 313, 494
GsuI CTGGAG 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 5 cut(s) 149, 281, 344, 443, 557
HapII CCGG 4 cut(s) 202, 348, 444, 467
HgaI GACGC 1 cut(s) 97
HhaI GCGC 3 cut(s) 176, 210, 312
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 4 cut(s) 25, 154, 409, 493
Hin6I GCGC 3 cut(s) 174, 208, 310
HinP1I GCGC 3 cut(s) 174, 208, 310
HincII GTYRAC 2 cut(s) 450, 481
HindII GTYRAC 2 cut(s) 450, 481
HinfI GANTC 2 cut(s) 332, 391
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 4 cut(s) 202, 348, 444, 467
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 450, 481
Hpy188I TCNGA 4 cut(s) 127, 190, 233, 370
Hpy188III TCNNGA 3 cut(s) 202, 269, 358
Hpy8I GTNNAC 2 cut(s) 450, 481
Hpy99I CGWCG 4 cut(s) 173, 260, 454, 457
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 3 cut(s) 74, 323, 452
HpyCH4V TGCA 2 cut(s) 61, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 260, 625
HpyF3I CTNAG 4 cut(s) 196, 276, 629, 645
HpySE526I ACGT 3 cut(s) 74, 323, 452
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 4 cut(s) 25, 154, 409, 493
HspAI GCGC 3 cut(s) 174, 208, 310
Kpn2I TCCGGA 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 4 cut(s) 73, 272, 324, 505
LweI GCATC 2 cut(s) 95, 297
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 74, 323, 452
MaeIII GTNAC 2 cut(s) 319, 324
MboII GAAGA 8 cut(s) 49, 128, 231, 482, 574, 581, 596, 599
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 1 cut(s) 422
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 256, 348
Mox20I TGGCCA 1 cut(s) 344
MroI TCCGGA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 344
MseI TTAA 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 4 cut(s) 202, 348, 444, 467
MspR9I CCNGG 1 cut(s) 445
Mva1269I GAATGC 2 cut(s) 439, 540
MwoI GCNNNNNNNGC 3 cut(s) 95, 260, 625
NciI CCSGG 1 cut(s) 445
NcoI CCATGG 2 cut(s) 21, 150
NlaIII CATG 4 cut(s) 25, 154, 409, 493
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 2 cut(s) 319, 324
NsbI TGCGCA 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PctI GAATGC 2 cut(s) 439, 540
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 4 cut(s) 63, 262, 314, 495
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 630
PspXI VCTCGAGB 1 cut(s) 329
SacI GAGCTC 1 cut(s) 630
SalI GTCGAC 1 cut(s) 448
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 4 cut(s) 62, 261, 313, 494
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 2 cut(s) 95, 297
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 3 cut(s) 7, 329, 518
SmoI CTYRAG 3 cut(s) 7, 329, 518
Sse9I AATT 1 cut(s) 422
SsiI CCGC 3 cut(s) 244, 503, 623
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 3 cut(s) 21, 150, 339
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 3 cut(s) 77, 326, 455
TaqI TCGA 7 cut(s) 168, 249, 270, 305, 330, 449, 461
TasI AATT 1 cut(s) 422
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 2 cut(s) 319, 324
TseI GCWGC 4 cut(s) 61, 260, 312, 493
Tsp45I GTSAC 2 cut(s) 319, 324
TspDTI ATGAA 2 cut(s) 62, 302
TspGWI ACGGA 1 cut(s) 443
XapI RAATTY 1 cut(s) 422
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 636
ZraI GACGTC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.