Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

57147281 .. 57148596

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGCAACACGGAGAAGCTGATGAACCAGATCATGGAGCTGAAATTCACCTCCAAATCCCTCCAGCGCCAATCCCGAAAGTGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGATCAAGAAGGCCATGGAGAAAGGCAACGTCGACGGCGCCCGGATCTACGCCGAGAACGCCATCCGCAAGCGCACCGAGCAAATGAACTACCTCCGCCTCGCCTCCCGCCTCGACGCCGTCGTCGCCCGCCTCGACACCCAGGCCAAGATGTCCACCATCAACAAGTCCATGGGCAACATCGTCAAATCACTCGAGTCCTCGCTCAACACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTTGAGAAGCAGTTCGTCAACATGGAGGTCCAGGCCGAGTTCATGGAGAGCTCCATGGCCGGCTCCACCTCTCTTTCCACTCCCGAAGGTGAGGTTAACAGTCTTATGCAACAGGTTGCCGATGACTATGGGCTTGAGGTCTCCGTGGGCCTGCCCCAGCCGGCGGCCCATGCCGTGCCCTCCAAGGAGGCTGAAAAGGTCGATGAGGATGATCTTTCCAGGAGGCTGGCGGAGCTCAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

203

Amino Acids

22.66

Weight (kDa)

6.66

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	11 - 181	1.8e-13	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	6 cut(s)	178, 208, 220, 241, 524, 590
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	150, 228
AfiI	CCNNNNNNNGG	2 cut(s)	34, 523
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	3 cut(s)	252, 390, 578
AluBI	AGCT	4 cut(s)	19, 40, 411, 595
AluI	AGCT	4 cut(s)	19, 40, 411, 595
Alw21I	GWGCWC	2 cut(s)	413, 597
Alw26I	GTCTC	2 cut(s)	341, 505
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	6 cut(s)	123, 255, 393, 417, 508, 525
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	69, 152, 186
AspS9I	GGNCC	3 cut(s)	388, 508, 526
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	40, 461
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	413, 597
Bbv12I	GWGCWC	2 cut(s)	413, 597
BccI	CCATC	2 cut(s)	182, 278
BceAI	ACGGC	3 cut(s)	163, 215, 518
BciT130I	CCWGG	3 cut(s)	254, 392, 580
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	341, 505
BfaI	CTAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	70, 153
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	4 cut(s)	154, 254, 392, 580
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	388, 508, 526
BmiI	GGNNCC	2 cut(s)	151, 424
BmrFI	CCNGG	4 cut(s)	154, 254, 392, 580
BpmI	CTGGAG	2 cut(s)	47, 317
BpuEI	CTTGAG	2 cut(s)	515, 581
BpuMI	CCSGG	1 cut(s)	154
BsaHI	GRCGYC	2 cut(s)	150, 228
BsaI	GGTCTC	2 cut(s)	341, 505
BsaJI	CCNNGG	7 cut(s)	126, 252, 282, 351, 414, 504, 543
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 523
Bse118I	RCCGGY	2 cut(s)	419, 520
BseBI	CCWGG	3 cut(s)	254, 392, 580
BseDI	CCNNGG	7 cut(s)	126, 252, 282, 351, 414, 504, 543
BseGI	GGATG	2 cut(s)	174, 574
BseLI	CCNNNNNNNGG	2 cut(s)	34, 523
BseSI	GKGCMC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	516
BshFI	GGCC	6 cut(s)	125, 257, 395, 419, 510, 527
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	413, 597
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	154, 324, 420, 521
BslI	CCNNNNNNNGG	2 cut(s)	34, 523
BsmAI	GTCTC	2 cut(s)	341, 505
BsnI	GGCC	6 cut(s)	125, 257, 395, 419, 510, 527
Bso31I	GGTCTC	2 cut(s)	341, 505
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	413, 540, 597
Bsp143I	GATC	4 cut(s)	30, 114, 156, 571
Bsp19I	CCATGG	4 cut(s)	126, 282, 351, 414
BspACI	CCGC	6 cut(s)	178, 208, 220, 241, 524, 590
BspANI	GGCC	6 cut(s)	125, 257, 395, 419, 510, 527
BspLI	GGNNCC	2 cut(s)	151, 424
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	341, 505
BsrFI	RCCGGY	2 cut(s)	419, 520
BssAI	RCCGGY	2 cut(s)	419, 520
BssECI	CCNNGG	7 cut(s)	126, 252, 282, 351, 414, 504, 543
BssMI	GATC	4 cut(s)	30, 114, 156, 571
BssNI	GRCGYC	2 cut(s)	150, 228
BssT1I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
Bst2UI	CCWGG	3 cut(s)	254, 392, 580
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	150, 228
BstC8I	GCNNGC	6 cut(s)	182, 241, 421, 512, 522, 588
BstDSI	CCRYGG	5 cut(s)	126, 282, 351, 414, 504
BstF5I	GGATG	2 cut(s)	174, 574
BstH2I	RGCGCY	2 cut(s)	70, 153
BstHHI	GCGC	3 cut(s)	69, 152, 186
BstKTI	GATC	4 cut(s)	33, 117, 159, 574
BstMAI	GTCTC	2 cut(s)	341, 505
BstMBI	GATC	4 cut(s)	30, 114, 156, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 190, 236, 530, 592
BstNI	CCWGG	3 cut(s)	254, 392, 580
BstSCI	CCNGG	4 cut(s)	152, 252, 390, 578
BstSLI	GKGCMC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	6 cut(s)	125, 257, 395, 419, 510, 527
BtgI	CCRYGG	5 cut(s)	126, 282, 351, 414, 504
BtsCI	GGATG	2 cut(s)	174, 574
Cac8I	GCNNGC	6 cut(s)	182, 241, 421, 512, 522, 588
CfoI	GCGC	3 cut(s)	69, 152, 186
Cfr10I	RCCGGY	2 cut(s)	419, 520
Cfr13I	GGNCC	3 cut(s)	388, 508, 526
CseI	GACGC	1 cut(s)	236
CviAII	CATG	8 cut(s)	34, 127, 283, 352, 382, 403, 415, 530
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	4 cut(s)	32, 116, 158, 573
DpnII	GATC	4 cut(s)	30, 114, 156, 571
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	2 cut(s)	197, 605
Ecl136II	GAGCTC	2 cut(s)	411, 595
Eco130I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
Eco24I	GRGCYC	2 cut(s)	413, 597
Eco31I	GGTCTC	2 cut(s)	341, 505
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	2 cut(s)	411, 595
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	2 cut(s)	411, 595
EcoRII	CCWGG	3 cut(s)	252, 390, 578
EcoT14I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
EcoT38I	GRGCYC	2 cut(s)	413, 597
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
FaeI	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
FatI	CATG	8 cut(s)	33, 126, 282, 351, 381, 402, 414, 529
FauI	CCCGC	2 cut(s)	227, 248
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	161, 581
FriOI	GRGCYC	2 cut(s)	413, 597
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	3 cut(s)	68, 151, 185
GluI	GCNGC	1 cut(s)	525
GsaI	CCCAGC	1 cut(s)	520
GsuI	CTGGAG	2 cut(s)	47, 317
HaeII	RGCGCY	2 cut(s)	70, 153
HaeIII	GGCC	6 cut(s)	125, 257, 395, 419, 510, 527
HapII	CCGG	4 cut(s)	154, 324, 420, 521
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	69, 152, 186
Hin1I	GRCGYC	2 cut(s)	150, 228
Hin1II	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
Hin6I	GCGC	3 cut(s)	67, 150, 184
HinP1I	GCGC	3 cut(s)	67, 150, 184
HincII	GTYRAC	3 cut(s)	145, 379, 457
HindII	GTYRAC	3 cut(s)	145, 379, 457
HinfI	GANTC	2 cut(s)	308, 356
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	4 cut(s)	154, 324, 420, 521
HphI	GGTGA	2 cut(s)	40, 461
Hpy166II	GTNNAC	4 cut(s)	145, 267, 379, 457
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	4 cut(s)	75, 118, 334, 443
Hpy8I	GTNNAC	4 cut(s)	145, 267, 379, 457
Hpy99I	CGWCG	5 cut(s)	146, 149, 230, 236, 239
HpyAV	CCTTC	3 cut(s)	82, 115, 440
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 190, 236, 530, 592
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	150, 228
Hsp92II	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
HspAI	GCGC	3 cut(s)	67, 150, 184
KasI	GGCGCC	1 cut(s)	149
KroI	GCCGGC	2 cut(s)	419, 520
KroNI	GCCGGC	2 cut(s)	421, 522
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	30, 114, 156, 571
LmnI	GCTCC	4 cut(s)	37, 416, 428, 592
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	141
MalI	GATC	4 cut(s)	32, 116, 158, 573
MboI	GATC	4 cut(s)	30, 114, 156, 571
MboII	GAAGA	3 cut(s)	104, 124, 349
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	413, 540, 597
MluCI	AATT	2 cut(s)	44, 107
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	317, 350
MmeI	TCCRAC	1 cut(s)	324
MroNI	GCCGGC	2 cut(s)	419, 520
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	2 cut(s)	456, 610
MspI	CCGG	4 cut(s)	154, 324, 420, 521
MspR9I	CCNGG	4 cut(s)	154, 254, 392, 580
MvaI	CCWGG	3 cut(s)	254, 392, 580
MwoI	GCNNNNNNNGC	5 cut(s)	170, 190, 236, 530, 592
NaeI	GCCGGC	2 cut(s)	421, 522
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	4 cut(s)	126, 282, 351, 414
NdeII	GATC	4 cut(s)	30, 114, 156, 571
NgoMIV	GCCGGC	2 cut(s)	419, 520
NlaIII	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
NlaIV	GGNNCC	2 cut(s)	151, 424
NmeAIII	GCCGAG	3 cut(s)	127, 190, 421
PaeR7I	CTCGAG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 243
PdiI	GCCGGC	2 cut(s)	421, 522
PdmI	GAANNNNTTC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	2 cut(s)	316, 350
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	316, 350
Psp124BI	GAGCTC	2 cut(s)	413, 597
Psp6I	CCWGG	3 cut(s)	252, 390, 578
PspFI	CCCAGC	1 cut(s)	516
PspGI	CCWGG	3 cut(s)	252, 390, 578
PspN4I	GGNNCC	2 cut(s)	151, 424
PspPI	GGNCC	3 cut(s)	388, 508, 526
PspXI	VCTCGAGB	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	156
PsyI	GACNNNGTC	1 cut(s)	230
SacI	GAGCTC	2 cut(s)	413, 597
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	456, 610
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	30, 114, 156, 571
Sau96I	GGNCC	3 cut(s)	388, 508, 526
SchI	GAGTC	2 cut(s)	317, 350
ScrFI	CCNGG	4 cut(s)	154, 254, 392, 580
SduI	GDGCHC	3 cut(s)	413, 540, 597
SfoI	GGCGCC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	305
SgrDI	CGTCGACG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	3 cut(s)	305, 494, 596
SmoI	CTYRAG	3 cut(s)	305, 494, 596
Sse9I	AATT	2 cut(s)	44, 107
SsiI	CCGC	6 cut(s)	178, 208, 220, 241, 524, 590
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	603
SstI	GAGCTC	2 cut(s)	413, 597
StyD4I	CCNGG	4 cut(s)	152, 252, 390, 578
StyI	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	5 cut(s)	144, 225, 246, 306, 561
TasI	AATT	2 cut(s)	44, 107
TauI	GCSGC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	456, 610
Tru9I	TTAA	2 cut(s)	456, 610
TspDTI	ATGAA	3 cut(s)	38, 212, 391
TspGWI	ACGGA	2 cut(s)	26, 493
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.