Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Reverse (-)

25243942 .. 25244469

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1161500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAAACACCGAGAAGCTGATGAACCAGATCATGGAGCTCAAATTCACCTCCAAGTCATTCCAGCGCCAGTCCAGGAAGTGCGAGAAGGAGGAAAAAGCCGAGAAGCTCAAGATCAAGAAGGCAATGGAGAAGGGAAACGTCGACGGATCCCGGATCTACGCCGAGAACGCGATCCGGAAGCACACTGAGCAGATGAACTACCTCCGCCTCGCCTCGCGGCTCGATGCCGTGGTGGTGCGGCTTGACACCCAGGCCAAGATGTTCACCATCAACAAGTCAATGGGCAATATCGTCAAATCGCTCGAGTCGTCATTGGCCACTGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTTGAGAAGCAATTTGTGAACATAGAGGTCCAGGCCGAGTTCATGGAGACCGCCATGGCTGGCTACACCTCGCTTTCGACACCGGAAGGTGAGGTCAATAGCTTGATGCAACAGGTTGCGGAGGATTTGGGTTTCATCTCGCGATATATTGCCCAAATAATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

176

Amino Acids

19.95

Weight (kDa)

8.57

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	11 - 163	5.3e-08	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	3 cut(s)	173, 220, 502
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	5 cut(s)	208, 220, 241, 411, 479
AclWI	GGATC	4 cut(s)	144, 157, 164, 169
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	74, 252, 390
AluBI	AGCT	4 cut(s)	19, 40, 109, 462
AluI	AGCT	4 cut(s)	19, 40, 109, 462
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	341, 401
AlwI	GGATC	4 cut(s)	144, 157, 164, 169
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	3 cut(s)	255, 318, 393
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	40, 259, 461
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	76, 254, 392
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	341, 401
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	2 cut(s)	221, 242
BlsI	GCNGC	2 cut(s)	222, 243
Bme1390I	CCNGG	4 cut(s)	76, 154, 254, 392
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	4 cut(s)	76, 154, 254, 392
BmsI	GCATC	2 cut(s)	217, 456
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	2 cut(s)	341, 401
BsaJI	CCNNGG	4 cut(s)	231, 252, 351, 414
BsaWI	WCCGGW	2 cut(s)	177, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	70, 328
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	76, 254, 392
BseDI	CCNNGG	4 cut(s)	231, 252, 351, 414
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	70, 328
Bsh1236I	CGCG	3 cut(s)	173, 220, 502
BshFI	GGCC	3 cut(s)	257, 320, 395
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	154, 178, 443
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	341, 401
BsnI	GGCC	3 cut(s)	257, 320, 395
Bso31I	GGTCTC	2 cut(s)	341, 401
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	5 cut(s)	30, 114, 149, 156, 174
Bsp19I	CCATGG	2 cut(s)	351, 414
Bsp68I	TCGCGA	1 cut(s)	502
BspACI	CCGC	5 cut(s)	208, 220, 241, 411, 479
BspANI	GGCC	3 cut(s)	257, 320, 395
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	3 cut(s)	173, 220, 502
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	4 cut(s)	144, 157, 164, 169
BspTNI	GGTCTC	2 cut(s)	341, 401
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	70, 328
BssECI	CCNNGG	4 cut(s)	231, 252, 351, 414
BssMI	GATC	5 cut(s)	30, 114, 149, 156, 174
BssT1I	CCWWGG	2 cut(s)	351, 414
Bst2UI	CCWGG	3 cut(s)	76, 254, 392
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	3 cut(s)	231, 351, 414
BstFNI	CGCG	3 cut(s)	173, 220, 502
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	5 cut(s)	33, 117, 152, 159, 177
BstMAI	GTCTC	2 cut(s)	341, 401
BstMBI	GATC	5 cut(s)	30, 114, 149, 156, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 190
BstNI	CCWGG	3 cut(s)	76, 254, 392
BstSCI	CCNGG	4 cut(s)	74, 152, 252, 390
BstUI	CGCG	3 cut(s)	173, 220, 502
BstX2I	RGATCY	2 cut(s)	149, 156
BstYI	RGATCY	2 cut(s)	149, 156
BsuRI	GGCC	3 cut(s)	257, 320, 395
BtgI	CCRYGG	3 cut(s)	231, 351, 414
BtsIMutI	CAGTG	2 cut(s)	186, 321
BtuMI	TCGCGA	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	4 cut(s)	34, 352, 403, 415
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	5 cut(s)	32, 116, 151, 158, 176
DpnII	GATC	5 cut(s)	30, 114, 149, 156, 174
EaeI	YGGCCR	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	351, 414
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	2 cut(s)	341, 401
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	74, 252, 390
EcoT14I	CCWWGG	2 cut(s)	351, 414
EcoT22I	ATGCAT	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	351, 414
FaeI	CATG	4 cut(s)	37, 355, 406, 418
FaiI	YATR	6 cut(s)	35, 353, 383, 404, 416, 507
FatI	CATG	4 cut(s)	33, 351, 402, 414
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	221, 242
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	221, 242
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	221, 242
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	257, 320, 395
HapII	CCGG	3 cut(s)	154, 178, 443
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	37, 355, 406, 418
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	308, 356
HpaII	CCGG	3 cut(s)	154, 178, 443
HphI	GGTGA	3 cut(s)	40, 259, 461
Hpy166II	GTNNAC	3 cut(s)	145, 267, 379
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	112, 118, 178, 334, 501
Hpy8I	GTNNAC	3 cut(s)	145, 267, 379
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	4 cut(s)	82, 115, 127, 440
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	469, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 190
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	37, 355, 406, 418
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	30, 114, 149, 156, 174
LmnI	GCTCC	1 cut(s)	37
LweI	GCATC	2 cut(s)	217, 456
MaeII	ACGT	1 cut(s)	141
MalI	GATC	5 cut(s)	32, 116, 151, 158, 176
MboI	GATC	5 cut(s)	30, 114, 149, 156, 174
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	2 cut(s)	149, 156
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	2 cut(s)	44, 371
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	317, 350
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	525
MroI	TCCGGA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	526
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	3 cut(s)	154, 178, 443
MspR9I	CCNGG	4 cut(s)	76, 154, 254, 392
MvaI	CCWGG	3 cut(s)	76, 254, 392
MvnI	CGCG	3 cut(s)	173, 220, 502
MwoI	GCNNNNNNNGC	2 cut(s)	170, 190
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	2 cut(s)	351, 414
NdeII	GATC	5 cut(s)	30, 114, 149, 156, 174
NlaIII	CATG	4 cut(s)	37, 355, 406, 418
NlaIV	GGNNCC	1 cut(s)	151
NmeAIII	GCCGAG	3 cut(s)	127, 190, 421
NruI	TCGCGA	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	2 cut(s)	74, 152
PkrI	GCNGC	2 cut(s)	222, 243
PleI	GAGTC	2 cut(s)	316, 350
PpsI	GAGTC	2 cut(s)	316, 350
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	3 cut(s)	74, 252, 390
PspGI	CCWGG	3 cut(s)	74, 252, 390
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	388
PspXI	VCTCGAGB	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	149, 156
RruI	TCGCGA	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	526
SatI	GCNGC	2 cut(s)	221, 242
Sau3AI	GATC	5 cut(s)	30, 114, 149, 156, 174
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	317, 350
ScrFI	CCNGG	4 cut(s)	76, 154, 254, 392
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	217, 456
Sfr274I	CTCGAG	1 cut(s)	305
SgrDI	CGTCGACG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	110, 305
SmoI	CTYRAG	2 cut(s)	110, 305
Sse9I	AATT	2 cut(s)	44, 371
SsiI	CCGC	5 cut(s)	208, 220, 241, 411, 479
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	74, 152, 252, 390
StyI	CCWWGG	2 cut(s)	351, 414
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	144, 225, 306, 437
TasI	AATT	2 cut(s)	44, 371
TauI	GCSGC	2 cut(s)	223, 244
Tru1I	TTAA	1 cut(s)	526
Tru9I	TTAA	1 cut(s)	526
TscAI	CASTG	2 cut(s)	193, 328
TspDTI	ATGAA	4 cut(s)	38, 212, 391, 484
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	193, 328
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.