Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Forward (+)

3762054 .. 3763110

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAAACACCGAGAAGCTGATGAACCAGATCATGGAGCTGAAATTTACGTCCAAGTCGCTTCAGCGCCAATCCAGAAAGTGCGAGAAAGAGGAGAAAGCCGAGAAGCTGAAGATCAAGAAGGCCATGGAAAAAGGCAACGTTGACGGCGCTCGGATCTACGCCGAGAACGCGATCCGAAAGCGCACAGAGCAAATGAACTATCTCCGGCTCGCTTCCCGGCTCGACGCTGTGGTGGCTCGGCTCGACACCCAGGCCAAGATGTTCACCATCAATAAGTCCATGGGAAATATTGTCAAATCACTCGAATCGTCGCTGGCCACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTCGAGAAGCAGTTCGTGAACATGGAGGTCCAGGCCGAGTTCATGGAAACCGCCATGGCTGGCTCCACCTCGCTTTCGACTCCAGAGGGTGAGGTCAATAGCTTGATGCAACAGGTCGCCGATGACTATGGGCTTGAGGTTTCTGTGGGCCTACCTCAGCCAGCTGCCCATGCCGTGCCGGCCAAGGAAACCGAGAAGGTCGACGAGGACGACCTCTCCAGGAGGCTTGCGGAGCTCAAGGCTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

204

Amino Acids

22.69

Weight (kDa)

6.66

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	173
AciI	CCGC	2 cut(s)	411, 590
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	2 cut(s)	164, 169
AcoI	YGGCCR	2 cut(s)	318, 540
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	47, 131
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	252, 390, 578
AluBI	AGCT	6 cut(s)	19, 40, 109, 462, 524, 595
AluI	AGCT	6 cut(s)	19, 40, 109, 462, 524, 595
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	164, 169
AoxI	GGCC	6 cut(s)	123, 255, 318, 393, 508, 540
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	69, 152, 186
AspS9I	GGNCC	2 cut(s)	388, 508
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	259, 461
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	163, 518
BciT130I	CCWGG	3 cut(s)	254, 392, 580
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	70, 153
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	4 cut(s)	220, 254, 392, 580
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 508
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	4 cut(s)	220, 254, 392, 580
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	3 cut(s)	317, 426, 562
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	515, 581
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	6 cut(s)	126, 252, 282, 351, 414, 543
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	538
BseBI	CCWGG	3 cut(s)	254, 392, 580
BseDI	CCNNGG	6 cut(s)	126, 252, 282, 351, 414, 543
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	530
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	6 cut(s)	125, 257, 320, 395, 510, 542
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	4 cut(s)	208, 220, 324, 539
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	6 cut(s)	125, 257, 320, 395, 510, 542
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	4 cut(s)	30, 114, 156, 174
Bsp19I	CCATGG	4 cut(s)	126, 282, 351, 414
BspACI	CCGC	2 cut(s)	411, 590
BspANI	GGCC	6 cut(s)	125, 257, 320, 395, 510, 542
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	164, 169
BspTNI	GGTCTC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	6 cut(s)	126, 252, 282, 351, 414, 543
BssMI	GATC	4 cut(s)	30, 114, 156, 174
BssT1I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
Bst2UI	CCWGG	3 cut(s)	254, 392, 580
BstC8I	GCNNGC	6 cut(s)	213, 318, 421, 522, 540, 588
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	4 cut(s)	126, 282, 351, 414
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	2 cut(s)	70, 153
BstHHI	GCGC	3 cut(s)	69, 152, 186
BstKTI	GATC	4 cut(s)	33, 117, 159, 177
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	30, 114, 156, 174
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
BstNI	CCWGG	3 cut(s)	254, 392, 580
BstSCI	CCNGG	4 cut(s)	218, 252, 390, 578
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	6 cut(s)	125, 257, 320, 395, 510, 542
BtgI	CCRYGG	4 cut(s)	126, 282, 351, 414
Cac8I	GCNNGC	6 cut(s)	213, 318, 421, 522, 540, 588
CfoI	GCGC	3 cut(s)	69, 152, 186
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	388, 508
CseI	GACGC	1 cut(s)	236
CviAII	CATG	8 cut(s)	34, 127, 283, 352, 382, 403, 415, 530
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	4 cut(s)	32, 116, 158, 176
DpnII	GATC	4 cut(s)	30, 114, 156, 174
EaeI	YGGCCR	2 cut(s)	318, 540
Ecl136II	GAGCTC	1 cut(s)	595
Eco130I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
Eco24I	GRGCYC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	47, 131
EcoICRI	GAGCTC	1 cut(s)	595
EcoRII	CCWGG	3 cut(s)	252, 390, 578
EcoT14I	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
EcoT38I	GRGCYC	1 cut(s)	597
ErhI	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
FaeI	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
FaiI	YATR	9 cut(s)	35, 128, 284, 353, 383, 404, 416, 489, 531
FatI	CATG	8 cut(s)	33, 126, 282, 351, 381, 402, 414, 529
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	3 cut(s)	68, 151, 185
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	3 cut(s)	317, 426, 562
HaeII	RGCGCY	2 cut(s)	70, 153
HaeIII	GGCC	6 cut(s)	125, 257, 320, 395, 510, 542
HapII	CCGG	4 cut(s)	208, 220, 324, 539
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	69, 152, 186
Hin1II	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
Hin6I	GCGC	3 cut(s)	67, 150, 184
HinP1I	GCGC	3 cut(s)	67, 150, 184
HincII	GTYRAC	2 cut(s)	145, 562
HindII	GTYRAC	2 cut(s)	145, 562
HinfI	GANTC	3 cut(s)	308, 356, 439
HpaII	CCGG	4 cut(s)	208, 220, 324, 539
HphI	GGTGA	2 cut(s)	259, 461
Hpy166II	GTNNAC	4 cut(s)	145, 267, 379, 562
Hpy188I	TCNGA	3 cut(s)	156, 179, 346
Hpy188III	TCNNGA	6 cut(s)	75, 118, 334, 364, 376, 443
Hpy8I	GTNNAC	4 cut(s)	145, 267, 379, 562
Hpy99I	CGWCG	3 cut(s)	230, 316, 566
HpyAV	CCTTC	2 cut(s)	115, 550
HpyCH4IV	ACGT	2 cut(s)	50, 141
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	2 cut(s)	50, 141
Hsp92II	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
HspAI	GCGC	3 cut(s)	67, 150, 184
KroI	GCCGGC	1 cut(s)	538
KroNI	GCCGGC	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	30, 114, 156, 174
LmnI	GCTCC	3 cut(s)	37, 428, 592
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	2 cut(s)	50, 141
MalI	GATC	4 cut(s)	32, 116, 158, 176
MboI	GATC	4 cut(s)	30, 114, 156, 174
MboII	GAAGA	2 cut(s)	124, 349
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	350, 433
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	4 cut(s)	208, 220, 324, 539
MspR9I	CCNGG	4 cut(s)	220, 254, 392, 580
MvaI	CCWGG	3 cut(s)	254, 392, 580
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
NaeI	GCCGGC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	4 cut(s)	126, 282, 351, 414
NdeII	GATC	4 cut(s)	30, 114, 156, 174
NgoMIV	GCCGGC	1 cut(s)	538
NlaIII	CATG	8 cut(s)	37, 130, 286, 355, 385, 406, 418, 533
NlaIV	GGNNCC	1 cut(s)	424
NmeAIII	GCCGAG	4 cut(s)	127, 190, 220, 421
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdiI	GCCGGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	2 cut(s)	350, 433
PpsI	GAGTC	2 cut(s)	350, 433
Psp124BI	GAGCTC	1 cut(s)	597
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	252, 390, 578
PspGI	CCWGG	3 cut(s)	252, 390, 578
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	388, 508
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	597
SalI	GTCGAC	1 cut(s)	560
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	30, 114, 156, 174
Sau96I	GGNCC	2 cut(s)	388, 508
SchI	GAGTC	2 cut(s)	350, 433
ScrFI	CCNGG	4 cut(s)	220, 254, 392, 580
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	494, 596
SmoI	CTYRAG	2 cut(s)	494, 596
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	411, 590
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	603
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	4 cut(s)	218, 252, 390, 578
StyI	CCWWGG	5 cut(s)	126, 282, 351, 414, 543
TaiI	ACGT	2 cut(s)	53, 144
TaqI	TCGA	6 cut(s)	225, 246, 306, 363, 437, 561
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	38, 212, 391
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.