Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006255

Physical Location & Seq

Genomic Coordinates Forward (+)

20419806 .. 20420417

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1178300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAAACACCGAGAAGCTGATGAACCAGATCATGGAGCTCAAATTCACCTCCAAGTCGCTTCAGCGCCAGTCCAGGAAGTGCGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCAATGGAGAAAGGCAACGTCGACGGCGCCCGGATCTACGCCGAGAACGCCATCCGGAAGCGCACCGAGCAGATGAACTACCTCCGCCTCGCCTCGCGGCTCGACGCCGTGGTGGCGCGGCTCGACACCCAGGCCAAGATGTTCACCATCAACAAGTCGATGGGCAATATCGTCAAATCGCTTGAGTCGTCGCTGGCCACCGGAAACCTCCAGAAGATGTCGGAGACCATGGACTCGTTCGAGAAGCAGTTCGTGAACATGGAGGTTCAGGCCGAGTTCATGGAGACCGCTATGGCTGGCTCCACCTCGCTTTCGACACCGGAAGGTGAGGTCAATAGCTTGATGCAACAGGTTGCGGATGACTATGGCCTTGAGGTGTCCGTCGGCCTGCCTCAGCCAGCTGCACATGCCGTGCCCGCCAAGGAAACCGAGAAGGTCGACGAGGACGACCTCTCCAGGAGGCTTGCGGAGCTCAAGGCTAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032509 GO:0033036 GO:0033365 GO:0034613 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

204

Amino Acids

22.7

Weight (kDa)

6.66

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	11 - 173	4.6e-13	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17730 AT1G73030
fragaria_vesca	FvH4_1g06550 FvH4_6g32870
malus_domestica	MD09G1196800.v1.1 MD10G1056000.v1.1 MD10G1161500.v1.1 MD12G1147400.v1.1 MD17G1178300.v1.1
prunus_persica	Prupe.3G053300_v2.0.a1
pyrus_communis	pycom09g11390 pycom17g18730
rosa_chinensis	RchiOBHm_Chr2g0142211 RchiOBHm_Chr2g0142261
rosa_laevigata	RLG00000019952
rosa_multiflora	Rmu_sc0001211.1_g000052
rosa_roxburghii	Rroxscaffold_2G00102830 Rroxscaffold_2G00102870
rosa_rugosa	Rorug02G0371100
rosa_samantha	Rh2AG423200 Rh2AG423400 Rh2BG433100 Rh2CG410000 Rh2CG410100 Rh2DG442900
rosa_wichuraiana	Rw0G014840 Rw2G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	2 cut(s)	144, 561
AccII	CGCG	2 cut(s)	220, 241
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	7 cut(s)	208, 220, 241, 411, 479, 540, 590
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	150, 228
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	74, 252, 578
AluBI	AGCT	6 cut(s)	19, 40, 109, 462, 524, 595
AluI	AGCT	6 cut(s)	19, 40, 109, 462, 524, 595
Alw21I	GWGCWC	2 cut(s)	42, 597
Alw26I	GTCTC	2 cut(s)	341, 401
AlwI	GGATC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	5 cut(s)	255, 318, 393, 490, 508
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	4 cut(s)	69, 152, 186, 241
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	40, 259, 461
BaeGI	GKGCMC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	42, 597
Bbv12I	GWGCWC	2 cut(s)	42, 597
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	182, 277, 278
BceAI	ACGGC	3 cut(s)	163, 215, 518
BciT130I	CCWGG	3 cut(s)	76, 254, 580
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	341, 401
BfaI	CTAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	70, 153
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	221, 242, 525
BlsI	GCNGC	3 cut(s)	222, 243, 526
Bme1390I	CCNGG	4 cut(s)	76, 154, 254, 580
BmiI	GGNNCC	2 cut(s)	151, 424
BmrFI	CCNGG	4 cut(s)	76, 154, 254, 580
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	2 cut(s)	317, 562
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	4 cut(s)	95, 326, 515, 581
BpuMI	CCSGG	1 cut(s)	154
BsaHI	GRCGYC	2 cut(s)	150, 228
BsaI	GGTCTC	2 cut(s)	341, 401
BsaJI	CCNNGG	4 cut(s)	231, 252, 351, 543
BsaWI	WCCGGW	3 cut(s)	177, 323, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	76, 254, 580
BseDI	CCNNGG	4 cut(s)	231, 252, 351, 543
BseGI	GGATG	2 cut(s)	174, 487
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	220, 241
BshFI	GGCC	5 cut(s)	257, 320, 395, 492, 510
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	42, 597
BsiSI	CCGG	4 cut(s)	154, 178, 324, 443
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	341, 401
BsnI	GGCC	5 cut(s)	257, 320, 395, 492, 510
Bso31I	GGTCTC	2 cut(s)	341, 401
Bsp1286I	GDGCHC	3 cut(s)	42, 540, 597
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	30, 114, 156
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	7 cut(s)	208, 220, 241, 411, 479, 540, 590
BspANI	GGCC	5 cut(s)	257, 320, 395, 492, 510
BspCNI	CTCAG	1 cut(s)	529
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	220, 241
BspLI	GGNNCC	2 cut(s)	151, 424
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	341, 401
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	231, 252, 351, 543
BssMI	GATC	3 cut(s)	30, 114, 156
BssNI	GRCGYC	2 cut(s)	150, 228
BssT1I	CCWWGG	2 cut(s)	351, 543
Bst2UI	CCWGG	3 cut(s)	76, 254, 580
BstACI	GRCGYC	2 cut(s)	150, 228
BstC8I	GCNNGC	6 cut(s)	318, 421, 512, 522, 540, 588
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	2 cut(s)	231, 351
BstF5I	GGATG	2 cut(s)	174, 487
BstFNI	CGCG	2 cut(s)	220, 241
BstH2I	RGCGCY	2 cut(s)	70, 153
BstHHI	GCGC	4 cut(s)	69, 152, 186, 241
BstKTI	GATC	3 cut(s)	33, 117, 159
BstMAI	GTCTC	2 cut(s)	341, 401
BstMBI	GATC	3 cut(s)	30, 114, 156
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
BstNI	CCWGG	3 cut(s)	76, 254, 580
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	4 cut(s)	74, 152, 252, 578
BstSLI	GKGCMC	1 cut(s)	540
BstUI	CGCG	2 cut(s)	220, 241
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	257, 320, 395, 492, 510
BtgI	CCRYGG	2 cut(s)	231, 351
BtsCI	GGATG	2 cut(s)	174, 487
Cac8I	GCNNGC	6 cut(s)	318, 421, 512, 522, 540, 588
CfoI	GCGC	4 cut(s)	69, 152, 186, 241
CseI	GACGC	1 cut(s)	236
CviAII	CATG	5 cut(s)	34, 352, 382, 403, 530
DdeI	CTNAG	1 cut(s)	516
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	3 cut(s)	32, 116, 158
DpnII	GATC	3 cut(s)	30, 114, 156
EaeI	YGGCCR	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	2 cut(s)	40, 595
Eco130I	CCWWGG	2 cut(s)	351, 543
Eco24I	GRGCYC	2 cut(s)	42, 597
Eco31I	GGTCTC	2 cut(s)	341, 401
Eco53kI	GAGCTC	2 cut(s)	40, 595
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	2 cut(s)	40, 595
EcoRII	CCWGG	3 cut(s)	74, 252, 578
EcoT14I	CCWWGG	2 cut(s)	351, 543
EcoT38I	GRGCYC	2 cut(s)	42, 597
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	351, 543
FaeI	CATG	5 cut(s)	37, 355, 385, 406, 533
FaiI	YATR	7 cut(s)	35, 353, 383, 404, 416, 489, 531
FatI	CATG	5 cut(s)	33, 351, 381, 402, 529
FauI	CCCGC	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	144, 561
Fnu4HI	GCNGC	3 cut(s)	221, 242, 525
FokI	GGATG	2 cut(s)	161, 494
FriOI	GRGCYC	2 cut(s)	42, 597
Fsp4HI	GCNGC	3 cut(s)	221, 242, 525
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	4 cut(s)	68, 151, 185, 240
GluI	GCNGC	3 cut(s)	221, 242, 525
GsuI	CTGGAG	2 cut(s)	317, 562
HaeII	RGCGCY	2 cut(s)	70, 153
HaeIII	GGCC	5 cut(s)	257, 320, 395, 492, 510
HapII	CCGG	4 cut(s)	154, 178, 324, 443
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	4 cut(s)	69, 152, 186, 241
Hin1I	GRCGYC	2 cut(s)	150, 228
Hin1II	CATG	5 cut(s)	37, 355, 385, 406, 533
Hin6I	GCGC	4 cut(s)	67, 150, 184, 239
HinP1I	GCGC	4 cut(s)	67, 150, 184, 239
HincII	GTYRAC	2 cut(s)	145, 562
HindII	GTYRAC	2 cut(s)	145, 562
HinfI	GANTC	2 cut(s)	308, 356
HpaII	CCGG	4 cut(s)	154, 178, 324, 443
HphI	GGTGA	3 cut(s)	40, 259, 461
Hpy166II	GTNNAC	4 cut(s)	145, 267, 379, 562
Hpy188I	TCNGA	2 cut(s)	103, 346
Hpy188III	TCNNGA	6 cut(s)	112, 118, 178, 334, 364, 376
Hpy8I	GTNNAC	4 cut(s)	145, 267, 379, 562
Hpy99I	CGWCG	6 cut(s)	146, 149, 230, 316, 509, 566
HpyAV	CCTTC	4 cut(s)	82, 115, 440, 550
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	469, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	150, 228
Hsp92II	CATG	5 cut(s)	37, 355, 385, 406, 533
HspAI	GCGC	4 cut(s)	67, 150, 184, 239
KasI	GGCGCC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	30, 114, 156
LmnI	GCTCC	3 cut(s)	37, 428, 592
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	141
MalI	GATC	3 cut(s)	32, 116, 158
MboI	GATC	3 cut(s)	30, 114, 156
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	42, 540, 597
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	317, 350
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	610
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	4 cut(s)	154, 178, 324, 443
MspR9I	CCNGG	4 cut(s)	76, 154, 254, 580
MvaI	CCWGG	3 cut(s)	76, 254, 580
MvnI	CGCG	2 cut(s)	220, 241
MwoI	GCNNNNNNNGC	6 cut(s)	170, 190, 236, 530, 539, 592
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	30, 114, 156
NlaIII	CATG	5 cut(s)	37, 355, 385, 406, 533
NlaIV	GGNNCC	2 cut(s)	151, 424
NmeAIII	GCCGAG	2 cut(s)	190, 421
NspI	RCATGY	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 567
PdmI	GAANNNNTTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	2 cut(s)	74, 578
PkrI	GCNGC	3 cut(s)	222, 243, 526
PleI	GAGTC	2 cut(s)	316, 350
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	2 cut(s)	316, 350
Psp124BI	GAGCTC	2 cut(s)	42, 597
Psp6I	CCWGG	3 cut(s)	74, 252, 578
PspGI	CCWGG	3 cut(s)	74, 252, 578
PspN4I	GGNNCC	2 cut(s)	151, 424
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	524
SacI	GAGCTC	2 cut(s)	42, 597
SalI	GTCGAC	2 cut(s)	143, 560
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	3 cut(s)	221, 242, 525
Sau3AI	GATC	3 cut(s)	30, 114, 156
SchI	GAGTC	2 cut(s)	317, 350
ScrFI	CCNGG	4 cut(s)	76, 154, 254, 580
SduI	GDGCHC	3 cut(s)	42, 540, 597
SfaNI	GCATC	1 cut(s)	456
SfoI	GGCGCC	1 cut(s)	151
SgrDI	CGTCGACG	1 cut(s)	143
SmlI	CTYRAG	4 cut(s)	110, 305, 494, 596
SmoI	CTYRAG	4 cut(s)	110, 305, 494, 596
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	7 cut(s)	208, 220, 241, 411, 479, 540, 590
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	603
SstI	GAGCTC	2 cut(s)	42, 597
StyD4I	CCNGG	4 cut(s)	74, 152, 252, 578
StyI	CCWWGG	2 cut(s)	351, 543
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	7 cut(s)	144, 225, 246, 281, 363, 437, 561
TasI	AATT	1 cut(s)	44
TauI	GCSGC	2 cut(s)	223, 244
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	38, 212, 391
TspGWI	ACGGA	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	2 cut(s)	144, 561
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.