Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Reverse (-)

6305814 .. 6308243

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCCGCTGAGGATCGAAGTGAGGAACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAATTAATCCTGAAACCAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCAGAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGGTCGTGGTTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCGCTGTACAGATACGAAGCCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGACAGTAGAAGTGAAGGATCGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATCCTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAATTTGTCAGCTATGGAGAAAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCAGAGGATCAAGTCAATAGATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGCAACTTCCATTGATAAAAAGAATAACTACACAACATCCAAGCAACCTTTCAAAGATGATTCTGACATTGGTTCAACACCCATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCTCACAAACCATCCTCTTACAATGATGATGATCTTAAACAAATGACGTGTCAGGAGAATCACTACTCAGGGATGCTAGTTGACACTAATTTATCTCTTGGTGTATGGGAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTGAGAACTTGGAGAAAAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAGAAAAACAAGGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCCTATCAGAAAGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCCAAAGAGCACGTATATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

346

Amino Acids

38.35

Weight (kDa)

8.03

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 93	4.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	53 - 107	7.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	674
AciI	CCGC	4 cut(s)	6, 249, 347, 674
AclI	AACGTT	2 cut(s)	108, 794
AclWI	GGATC	5 cut(s)	21, 331, 337, 501, 919
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	987
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	5 cut(s)	131, 241, 255, 529, 802
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	5 cut(s)	104, 188, 604, 627, 639
AjiI	CACGTC	1 cut(s)	729
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AloI	GAACNNNNNNTCC	2 cut(s)	442, 474
AluBI	AGCT	6 cut(s)	191, 199, 305, 437, 894, 1001
AluI	AGCT	6 cut(s)	191, 199, 305, 437, 894, 1001
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	2 cut(s)	420, 462
AlwI	GGATC	5 cut(s)	21, 331, 337, 501, 919
AoxI	GGCC	2 cut(s)	3, 944
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
AseI	ATTAAT	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	1030
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	286, 700
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BcoDI	GTCTC	2 cut(s)	420, 462
BfaI	CTAG	2 cut(s)	758, 1039
BisI	GCNGC	2 cut(s)	6, 34
BlsI	GCNGC	2 cut(s)	7, 35
BmgBI	CACGTC	1 cut(s)	729
BmiI	GGNNCC	1 cut(s)	451
BmsI	GCATC	4 cut(s)	497, 744, 845, 947
Bpu10I	CCTNAGC	2 cut(s)	9, 297
BsaAI	YACGTR	1 cut(s)	1031
BsaBI	GATNNNNATC	3 cut(s)	341, 711, 961
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	4 cut(s)	400, 430, 442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	531, 808
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	3 cut(s)	341, 711, 961
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	5 cut(s)	376, 537, 587, 692, 759
BseJI	GATNNNNATC	3 cut(s)	341, 711, 961
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	5 cut(s)	311, 425, 480, 762, 831
BseNI	ACTGG	2 cut(s)	531, 808
BseRI	GAGGAG	2 cut(s)	342, 408
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	674
BshFI	GGCC	2 cut(s)	5, 946
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmAI	GTCTC	2 cut(s)	420, 462
BsnI	GGCC	2 cut(s)	5, 946
Bsp1286I	GDGCHC	1 cut(s)	1030
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
BspACI	CCGC	4 cut(s)	6, 249, 347, 674
BspANI	GGCC	2 cut(s)	5, 946
BspCNI	CTCAG	5 cut(s)	310, 424, 479, 761, 832
BspFNI	CGCG	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	451
BspPI	GGATC	5 cut(s)	21, 331, 337, 501, 919
BspQI	GCTCTTC	2 cut(s)	162, 517
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	531, 808
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
BssNI	GRCGYC	1 cut(s)	217
Bst4CI	ACNGT	4 cut(s)	129, 136, 311, 888
Bst6I	CTCTTC	2 cut(s)	162, 517
BstACI	GRCGYC	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	1031
BstDEI	CTNAG	9 cut(s)	9, 29, 141, 297, 411, 466, 748, 840, 898
BstF5I	GGATG	5 cut(s)	376, 537, 587, 692, 759
BstFNI	CGCG	1 cut(s)	674
BstKTI	GATC	6 cut(s)	16, 326, 345, 496, 715, 914
BstMAI	GTCTC	2 cut(s)	420, 462
BstMBI	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstUI	CGCG	1 cut(s)	674
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	911
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	911
BsuRI	GGCC	2 cut(s)	5, 946
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	5 cut(s)	376, 537, 587, 692, 759
BtsIMutI	CAGTG	2 cut(s)	474, 538
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	2 cut(s)	206, 1000
Csp6I	GTAC	5 cut(s)	130, 240, 254, 528, 801
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	3 cut(s)	173, 269, 879
CviQI	GTAC	5 cut(s)	130, 240, 254, 528, 801
DdeI	CTNAG	9 cut(s)	9, 29, 141, 297, 411, 466, 748, 840, 898
DpnI	GATC	6 cut(s)	15, 325, 344, 495, 714, 913
DpnII	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	162, 517
EarI	CTCTTC	2 cut(s)	162, 517
Eco57I	CTGAAG	1 cut(s)	987
EcoT22I	ATGCAT	1 cut(s)	817
FaeI	CATG	3 cut(s)	176, 272, 882
FatI	CATG	3 cut(s)	172, 268, 878
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	6, 34
FokI	GGATG	5 cut(s)	363, 524, 574, 679, 766
Fsp4HI	GCNGC	2 cut(s)	6, 34
FspBI	CTAG	2 cut(s)	758, 1039
GluI	GCNGC	2 cut(s)	6, 34
HaeIII	GGCC	2 cut(s)	5, 946
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	206, 1000
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	176, 272, 882
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	611, 680, 739
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	132, 528, 763
Hpy188I	TCNGA	6 cut(s)	390, 490, 616, 841, 967, 1006
Hpy188III	TCNNGA	5 cut(s)	80, 185, 299, 655, 734
Hpy8I	GTNNAC	3 cut(s)	132, 528, 763
HpyAV	CCTTC	2 cut(s)	62, 314
HpyCH4III	ACNGT	4 cut(s)	129, 136, 311, 888
HpyCH4IV	ACGT	4 cut(s)	108, 728, 794, 1030
HpyCH4V	TGCA	5 cut(s)	57, 554, 815, 860, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	9 cut(s)	9, 29, 141, 297, 411, 466, 748, 840, 898
HpySE526I	ACGT	4 cut(s)	108, 728, 794, 1030
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	176, 272, 882
Kzo9I	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
LguI	GCTCTTC	2 cut(s)	162, 517
LmnI	GCTCC	1 cut(s)	899
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	4 cut(s)	497, 744, 845, 947
MaeI	CTAG	2 cut(s)	758, 1039
MaeII	ACGT	4 cut(s)	108, 728, 794, 1030
MaeIII	GTNAC	4 cut(s)	136, 533, 826, 976
MalI	GATC	6 cut(s)	15, 325, 344, 495, 714, 913
MboI	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
MboII	GAAGA	6 cut(s)	179, 274, 504, 670, 689, 867
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	1 cut(s)	1030
MluCI	AATT	5 cut(s)	58, 72, 427, 520, 769
MmeI	TCCRAC	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	817
MseI	TTAA	4 cut(s)	75, 330, 717, 890
MslI	CAYNNNNRTG	1 cut(s)	1033
MspA1I	CMGCKG	2 cut(s)	8, 251
MspI	CCGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
NlaIII	CATG	3 cut(s)	176, 272, 882
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	817
PciSI	GCTCTTC	2 cut(s)	162, 517
PcsI	WCGNNNNNNNCGW	3 cut(s)	214, 332, 521
PfeI	GAWTC	3 cut(s)	611, 680, 739
PkrI	GCNGC	2 cut(s)	7, 35
Ppu21I	YACGTR	1 cut(s)	1031
PshBI	ATTAAT	1 cut(s)	75
Psp1406I	AACGTT	2 cut(s)	108, 794
PspN4I	GGNNCC	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	911
RsaI	GTAC	5 cut(s)	131, 241, 255, 529, 802
RsaNI	GTAC	5 cut(s)	130, 240, 254, 528, 801
RseI	CAYNNNNRTG	1 cut(s)	1033
SapI	GCTCTTC	2 cut(s)	162, 517
SaqAI	TTAA	4 cut(s)	75, 330, 717, 890
SatI	GCNGC	2 cut(s)	6, 34
Sau3AI	GATC	6 cut(s)	13, 323, 342, 493, 712, 911
SduI	GDGCHC	1 cut(s)	1030
SfaNI	GCATC	4 cut(s)	497, 744, 845, 947
SmiMI	CAYNNNNRTG	1 cut(s)	1033
Sse9I	AATT	5 cut(s)	58, 72, 427, 520, 769
SsiI	CCGC	4 cut(s)	6, 249, 347, 674
SspMI	CTAG	2 cut(s)	758, 1039
TaaI	ACNGT	4 cut(s)	129, 136, 311, 888
TaiI	ACGT	4 cut(s)	111, 731, 797, 1033
TaqI	TCGA	1 cut(s)	16
TasI	AATT	5 cut(s)	58, 72, 427, 520, 769
TatI	WGTACW	2 cut(s)	253, 800
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	611, 680, 739
Tru1I	TTAA	4 cut(s)	75, 330, 717, 890
Tru9I	TTAA	4 cut(s)	75, 330, 717, 890
TscAI	CASTG	2 cut(s)	474, 538
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	81, 867, 1023
TspRI	CASTG	2 cut(s)	474, 538
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	1 cut(s)	427
XspI	CTAG	2 cut(s)	758, 1039
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.