Rh7AG006200
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008575
Physical Location & Seq
Reverse (-)
424004 .. 426078
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG006200.1

Sequence Viewer

Length: 1041 bp
ATGGCTCTTGTCGAGGAGCAGAGTGAAGCCACGGGATCAAACGCCTCTGTTGCAGCTGGCAATTGCAGTTCAAAAGGCGATGCTCAATCAAAATTGGTGACTGAACTCAAGGACATTTCTTCATTTGGCAATGACCAGGCACTTAAGGTCAGGAAACCTTACACAATTACAAAACAAAGAGAAAAATGGACTGAGGAAGAACATCAGAAGTTCCTTGAAGCTTTGAAATTGTATGGCAGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAAACTGCAGTTCAGATACGAAGTCATGCTCAAAAGTTCTTCTCTAAGGTAGCTAAGGAGTCAACTGGAAATGGTGAAGGCTCACTCAAACCAATTGAAATACCTCCTCCACGACCTAAGCGGAAACCTATGCATCCTTATCCACGTAAACTCAATGGATCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCGGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATGTAATTGGGTCTGCAGCTTTGGACCAGTATAACAGATCTCGACCTTCAACTTCATGTACCACTGACATGCGATCAACCAACTTATCCCATGTTGAGAAAGAGAATGACTATGCAACCTCCAACTCATCCCTTGAAGAAGCAAAAGAATCTATGCCACCTGCCGACTCAACCTTGGACGAACCTCTCTCCATGAAAGATGAATCGGCTTCCAAGTACACTTCAACTACTGAAGGAGATGCAGCCACAGTGGGAGGTTCCACTAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCAGACCTGCATAAACAATCTCCTCCTGATACCAAGGGTTGTACTCTGTCGATATCCATGGCCAAACAAGAGAATTATGAGATTGAGTGTGGTCGGAACACCAAAATGAGAGCCCCAAGTCTGTGCAAGCCAACCCAGATGCTCTTCATCCCTTGCCATGGTGGGTTAATCTACCATTTTGTCAGGTCATACGTCTCAATTCTCGTGTTGATGAACAATTGA

Protein Analysis

346

Amino Acids

37.93

Weight (kDa)

8.59

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 60 - 103 6.5e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 2 cut(s) 691, 834
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 1 cut(s) 394
AclWI GGATC 2 cut(s) 43, 439
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 483, 774
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 4 cut(s) 513, 583, 740, 862
AfiI CCNNNNNNNGG 1 cut(s) 977
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 7 cut(s) 72, 218, 226, 371, 573, 659, 747
AjnI CCWGG 2 cut(s) 135, 514
AluBI AGCT 5 cut(s) 56, 221, 326, 542, 796
AluI AGCT 5 cut(s) 56, 221, 326, 542, 796
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 2 cut(s) 43, 439
AoxI GGCC 2 cut(s) 481, 879
ApeKI GCWGC 3 cut(s) 53, 539, 764
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 4 cut(s) 109, 359, 426, 441
AvaII GGWCC 1 cut(s) 547
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 934
BauI CACGAG 1 cut(s) 1022
BbvI GCAGC 3 cut(s) 65, 551, 776
BccI CCATC 1 cut(s) 460
BciT130I CCWGG 2 cut(s) 137, 516
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 2 cut(s) 279, 537
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 691, 834
BglII AGATCT 1 cut(s) 560
BisI GCNGC 3 cut(s) 54, 540, 765
BlsI GCNGC 3 cut(s) 55, 541, 766
Bme1390I CCNGG 2 cut(s) 137, 516
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 271, 781
BmrFI CCNGG 2 cut(s) 137, 516
BmsI GCATC 4 cut(s) 70, 415, 751, 948
Bpu10I CCTNAGC 2 cut(s) 327, 390
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 5 cut(s) 30, 696, 852, 876, 976
Bsc4I CCNNNNNNNGG 1 cut(s) 977
Bse1I ACTGG 2 cut(s) 343, 550
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 137, 516
BseDI CCNNGG 5 cut(s) 30, 696, 852, 876, 976
BseGI GGATG 3 cut(s) 406, 650, 966
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 183, 465
BseNI ACTGG 2 cut(s) 343, 550
BseRI GAGGAG 3 cut(s) 29, 369, 831
BseXI GCAGC 3 cut(s) 65, 551, 776
BshFI GGCC 2 cut(s) 483, 881
BshNI GGYRCC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 977
BsmAI GTCTC 1 cut(s) 1018
BsmBI CGTCTC 1 cut(s) 1018
BsnI GGCC 2 cut(s) 483, 881
Bsp1286I GDGCHC 1 cut(s) 934
Bsp143I GATC 4 cut(s) 35, 431, 560, 596
Bsp19I CCATGG 2 cut(s) 876, 976
BspACI CCGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 483, 881
BspCNI CTCAG 2 cut(s) 184, 466
BspLI GGNNCC 2 cut(s) 271, 781
BspMAI CTGCAG 2 cut(s) 283, 541
BspMI ACCTGC 2 cut(s) 691, 834
BspPI GGATC 2 cut(s) 43, 439
BspQI GCTCTTC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 343, 550
BssECI CCNNGG 5 cut(s) 30, 696, 852, 876, 976
BssMI GATC 4 cut(s) 35, 431, 560, 596
BssNI GRCGYC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 1022
BssT1I CCWWGG 4 cut(s) 696, 852, 876, 976
Bst2BI CACGAG 1 cut(s) 1022
Bst2UI CCWGG 2 cut(s) 137, 516
Bst4CI ACNGT 2 cut(s) 772, 811
Bst6I CTCTTC 1 cut(s) 968
BstACI GRCGYC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 58, 947
BstDEI CTNAG 5 cut(s) 192, 318, 327, 390, 474
BstDSI CCRYGG 3 cut(s) 30, 876, 976
BstEII GGTNACC 1 cut(s) 447
BstF5I GGATG 3 cut(s) 406, 650, 966
BstKTI GATC 4 cut(s) 38, 434, 563, 599
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 4 cut(s) 35, 431, 560, 596
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 137, 516
BstNSI RCATGY 2 cut(s) 266, 595
BstPI GGTNACC 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 135, 514
BstSFI CTRYAG 2 cut(s) 279, 537
BstV1I GCAGC 3 cut(s) 65, 551, 776
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 2 cut(s) 483, 881
BtgI CCRYGG 3 cut(s) 30, 876, 976
BtgZI GCGATG 2 cut(s) 93, 438
BtsCI GGATG 3 cut(s) 406, 650, 966
BtsIMutI CAGTG 2 cut(s) 585, 777
BveI ACCTGC 2 cut(s) 691, 834
Cac8I GCNNGC 2 cut(s) 58, 947
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 4 cut(s) 512, 582, 739, 861
CviAII CATG 8 cut(s) 263, 299, 579, 592, 614, 715, 877, 977
CviQI GTAC 4 cut(s) 512, 582, 739, 861
DdeI CTNAG 5 cut(s) 192, 318, 327, 390, 474
DpnI GATC 4 cut(s) 37, 433, 562, 598
DpnII GATC 4 cut(s) 35, 431, 560, 596
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 968
EarI CTCTTC 1 cut(s) 968
Eco130I CCWWGG 4 cut(s) 696, 852, 876, 976
Eco24I GRGCYC 1 cut(s) 934
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 483, 774
Eco91I GGTNACC 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 447
EcoRII CCWGG 2 cut(s) 135, 514
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 4 cut(s) 696, 852, 876, 976
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 934
ErhI CCWWGG 4 cut(s) 696, 852, 876, 976
Esp3I CGTCTC 1 cut(s) 1018
FaeI CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 980
FatI CATG 8 cut(s) 262, 298, 578, 591, 613, 714, 876, 976
Fnu4HI GCNGC 3 cut(s) 54, 540, 765
FokI GGATG 3 cut(s) 393, 637, 953
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 3 cut(s) 54, 540, 765
FspBI CTAG 1 cut(s) 786
GluI GCNGC 3 cut(s) 54, 540, 765
HaeIII GGCC 2 cut(s) 483, 881
HgaI GACGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 980
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 2 cut(s) 219, 794
HinfI GANTC 5 cut(s) 332, 488, 671, 689, 725
HphI GGTGA 4 cut(s) 109, 359, 426, 441
Hpy166II GTNNAC 3 cut(s) 336, 422, 741
Hpy188I TCNGA 5 cut(s) 207, 288, 523, 823, 915
Hpy188III TCNNGA 3 cut(s) 151, 564, 845
Hpy8I GTNNAC 3 cut(s) 336, 422, 741
HpyAV CCTTC 4 cut(s) 344, 579, 749, 798
HpyCH4III ACNGT 2 cut(s) 772, 811
HpyCH4IV ACGT 2 cut(s) 418, 1011
HpyCH4V TGCA 9 cut(s) 53, 66, 281, 406, 539, 638, 764, 829, 945
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 5 cut(s) 192, 318, 327, 390, 474
HpySE526I ACGT 2 cut(s) 418, 1011
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 980
Kzo9I GATC 4 cut(s) 35, 431, 560, 596
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 65, 551, 776
LweI GCATC 4 cut(s) 70, 415, 751, 948
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 786
MaeII ACGT 2 cut(s) 418, 1011
MaeIII GTNAC 2 cut(s) 97, 447
MalI GATC 4 cut(s) 37, 433, 562, 598
MboI GATC 4 cut(s) 35, 431, 560, 596
MboII GAAGA 6 cut(s) 111, 209, 269, 304, 671, 955
MfeI CAATTG 3 cut(s) 61, 366, 1036
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 934
MlsI TGGCCA 1 cut(s) 881
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 2 cut(s) 341, 683
MmeI TCCRAC 2 cut(s) 669, 893
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 881
MseI TTAA 3 cut(s) 144, 792, 986
MslI CAYNNNNRTG 2 cut(s) 590, 923
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 137, 516
MunI CAATTG 3 cut(s) 61, 366, 1036
MvaI CCWGG 2 cut(s) 137, 516
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 2 cut(s) 876, 976
NdeII GATC 4 cut(s) 35, 431, 560, 596
NlaIII CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 980
NlaIV GGNNCC 2 cut(s) 271, 781
NmuCI GTSAC 2 cut(s) 97, 447
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 2 cut(s) 266, 595
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 968
PfeI GAWTC 3 cut(s) 488, 671, 725
PkrI GCNGC 3 cut(s) 55, 541, 766
PleI GAGTC 2 cut(s) 340, 683
PpsI GAGTC 2 cut(s) 340, 683
Ppu21I YACGTR 1 cut(s) 419
PscI ACATGT 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 135, 514
PspEI GGTNACC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 135, 514
PspN4I GGNNCC 2 cut(s) 271, 781
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 2 cut(s) 283, 541
PsuI RGATCY 1 cut(s) 560
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 4 cut(s) 513, 583, 740, 862
RsaNI GTAC 4 cut(s) 512, 582, 739, 861
RseI CAYNNNNRTG 2 cut(s) 590, 923
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 3 cut(s) 144, 792, 986
SatI GCNGC 3 cut(s) 54, 540, 765
Sau3AI GATC 4 cut(s) 35, 431, 560, 596
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 341, 683
ScrFI CCNGG 2 cut(s) 137, 516
SduI GDGCHC 1 cut(s) 934
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 4 cut(s) 70, 415, 751, 948
SfcI CTRYAG 2 cut(s) 279, 537
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 590, 923
SmlI CTYRAG 2 cut(s) 107, 143
SmoI CTYRAG 2 cut(s) 107, 143
SsiI CCGC 1 cut(s) 394
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 135, 514
StyI CCWWGG 4 cut(s) 696, 852, 876, 976
TaaI ACNGT 2 cut(s) 772, 811
TaiI ACGT 2 cut(s) 421, 1014
TaqI TCGA 3 cut(s) 12, 565, 869
TatI WGTACW 2 cut(s) 738, 860
TfiI GAWTC 3 cut(s) 488, 671, 725
Tru1I TTAA 3 cut(s) 144, 792, 986
Tru9I TTAA 3 cut(s) 144, 792, 986
TscAI CASTG 2 cut(s) 592, 777
TseFI GTSAC 2 cut(s) 97, 447
TseI GCWGC 3 cut(s) 53, 539, 764
Tsp45I GTSAC 2 cut(s) 97, 447
TspDTI ATGAA 5 cut(s) 111, 567, 731, 738, 955
TspRI CASTG 2 cut(s) 592, 777
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 1 cut(s) 460
XceI RCATGY 2 cut(s) 266, 595
XspI CTAG 1 cut(s) 786
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.