RchiOBHm_Chr7g0177511
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008575
Physical Location & Seq
Reverse (-)
438486 .. 441496
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15812

Sequence Viewer

Length: 1254 bp
ATGGCTCTTGTCGAGGATCAGAGTGAAGCCACGGGATCAAACGCCTCTGTTGCAGCTGGCAATTGCAGTTCAAAAGGCGATGCTCAATCAAAATTGGTGACGGAACTCAAGGACATTTCTTCATTTGGCAATGACCAGGCACTTAAGGTCAGGAAACCTTACACAATTACAAAACAAAGAGAAAAATGGACTGAGGAAGAACATCAGAAGTTCCTTGAAGCCTTGAAATTGTATGGCAGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAAACTGCAGTTCAGATACGAAGTCATGCTCAAAAGTTCTTCTCTAAGGTAGCTAAGGAGTCAACTGGAAATGGTGAAGGCTCACTCAAACCAATTGAAATACCTCCTCCACGACCTAAGCGGAAACCTATGCATCCTTATCCACGTAAACTCAATGGATCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCGGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATGTAATTGGGTCTGCAGCTTTGGACCAGTATAACAGATCTCCACCTTCAACTTCATGTACCACTGACATGCGATCAACCAACTTATCCCATGTTGAGAAAGAGAATGACTATGCAACCTCCAACTCATCCCTTGAAGAAGCAAAAGAATCTATGCCACCTGCCGACTCAACCTTGGACGAACCTCTCTCCATGAAAGATGAATCGGCTTCCAAGTACACTTCAACTACTGAAGGAGATGCAGCCACAGTGGGAGGTTCCACTAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCAGACCTGCATAAACAATCTCCTCCTGATACCAAGGATTGTACTCTGTCGATATCCATGGCCAAACGAGAGAATTATGAGATTGAGTGTGGTAAGGCGGAACACCAAAATGAGAGCCCCAAGTCTGTGCAAGCCAACCCCGATGCTCCTCATCCCTTGCCATGGTGGGTTAATCTACCATTTTGTCAGGTCATACGTGTCGATTCTCGTGTTGATGAACAATTGAAAGAGAAGGAAAGATCTTGCGCTGGTTCAAACGATGGGTCAGTTAGTTCAATTGATTCTTTATGTGAAGAAGCTCGTAGTGTTGTGCCCTGCAATTCAAGGAAGGGGTTTGTACCATACAAAAGATGTTTAGCAGATACAAACAGGAACTCATCTGTGATAGTATCTGAAGAGATGAGGGACAGACAAAGGGCTCGTGTTTGCTCATAA

Protein Analysis

417

Amino Acids

45.81

Weight (kDa)

6.73

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 60 - 103 8.4e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 2 cut(s) 691, 834
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 2 cut(s) 394, 917
AclWI GGATC 3 cut(s) 24, 43, 439
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 3 cut(s) 483, 774, 1233
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 5 cut(s) 513, 583, 740, 862, 1158
AfiI CCNNNNNNNGG 1 cut(s) 981
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 262, 1015
AjnI CCWGG 2 cut(s) 135, 514
AluBI AGCT 5 cut(s) 56, 326, 542, 796, 1118
AluI AGCT 5 cut(s) 56, 326, 542, 796, 1118
AlwI GGATC 3 cut(s) 24, 43, 439
AoxI GGCC 2 cut(s) 481, 879
ApeKI GCWGC 3 cut(s) 53, 539, 764
ApoI RAATTY 1 cut(s) 460
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AspLEI GCGC 1 cut(s) 1067
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 4 cut(s) 109, 359, 426, 441
AvaII GGWCC 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 1134
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 938, 1240
BauI CACGAG 2 cut(s) 1026, 1239
BbvI GCAGC 3 cut(s) 65, 551, 776
BccI CCATC 2 cut(s) 460, 1073
BciT130I CCWGG 2 cut(s) 137, 516
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 2 cut(s) 279, 537
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 691, 834
BglII AGATCT 2 cut(s) 560, 1058
BisI GCNGC 3 cut(s) 54, 540, 765
BlsI GCNGC 3 cut(s) 55, 541, 766
Bme1390I CCNGG 2 cut(s) 137, 516
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 271, 781
BmrFI CCNGG 2 cut(s) 137, 516
BmsI GCATC 4 cut(s) 70, 415, 751, 952
Bpu10I CCTNAGC 2 cut(s) 327, 390
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 2 cut(s) 419, 1016
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 5 cut(s) 30, 696, 852, 876, 980
Bsc4I CCNNNNNNNGG 1 cut(s) 981
Bse1I ACTGG 2 cut(s) 343, 550
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 137, 516
BseDI CCNNGG 5 cut(s) 30, 696, 852, 876, 980
BseGI GGATG 3 cut(s) 406, 650, 970
BseLI CCNNNNNNNGG 1 cut(s) 981
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 183, 465
BseNI ACTGG 2 cut(s) 343, 550
BseRI GAGGAG 3 cut(s) 369, 831, 957
BseSI GKGCMC 1 cut(s) 1134
BseXI GCAGC 3 cut(s) 65, 551, 776
BshFI GGCC 2 cut(s) 483, 881
BshNI GGYRCC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 1238
BslI CCNNNNNNNGG 1 cut(s) 981
BsmFI GGGAC 1 cut(s) 1238
BsnI GGCC 2 cut(s) 483, 881
Bsp1286I GDGCHC 3 cut(s) 938, 1134, 1240
Bsp143I GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
Bsp19I CCATGG 2 cut(s) 876, 980
BspACI CCGC 2 cut(s) 394, 917
BspANI GGCC 2 cut(s) 483, 881
BspCNI CTCAG 2 cut(s) 184, 466
BspLI GGNNCC 2 cut(s) 271, 781
BspMAI CTGCAG 2 cut(s) 283, 541
BspMI ACCTGC 2 cut(s) 691, 834
BspPI GGATC 3 cut(s) 24, 43, 439
BspT107I GGYRCC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 343, 550
BssECI CCNNGG 5 cut(s) 30, 696, 852, 876, 980
BssMI GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
BssNI GRCGYC 1 cut(s) 247
BssSI CACGAG 2 cut(s) 1026, 1239
BssT1I CCWWGG 4 cut(s) 696, 852, 876, 980
Bst2BI CACGAG 2 cut(s) 1026, 1239
Bst2UI CCWGG 2 cut(s) 137, 516
Bst4CI ACNGT 2 cut(s) 772, 811
Bst6I CTCTTC 1 cut(s) 1209
BstACI GRCGYC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 2 cut(s) 419, 1016
BstC8I GCNNGC 2 cut(s) 58, 951
BstDEI CTNAG 5 cut(s) 192, 318, 327, 390, 474
BstDSI CCRYGG 3 cut(s) 30, 876, 980
BstEII GGTNACC 1 cut(s) 447
BstF5I GGATG 3 cut(s) 406, 650, 970
BstHHI GCGC 1 cut(s) 1067
BstKTI GATC 6 cut(s) 19, 38, 434, 563, 599, 1061
BstMBI GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 137, 516
BstNSI RCATGY 2 cut(s) 266, 595
BstPI GGTNACC 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 135, 514
BstSFI CTRYAG 2 cut(s) 279, 537
BstSLI GKGCMC 1 cut(s) 1134
BstV1I GCAGC 3 cut(s) 65, 551, 776
BstX2I RGATCY 2 cut(s) 560, 1058
BstYI RGATCY 2 cut(s) 560, 1058
BsuRI GGCC 2 cut(s) 483, 881
BtgI CCRYGG 3 cut(s) 30, 876, 980
BtgZI GCGATG 2 cut(s) 93, 438
BtsCI GGATG 3 cut(s) 406, 650, 970
BtsIMutI CAGTG 2 cut(s) 585, 777
BveI ACCTGC 2 cut(s) 691, 834
Cac8I GCNNGC 2 cut(s) 58, 951
CfoI GCGC 1 cut(s) 1067
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 5 cut(s) 512, 582, 739, 861, 1157
CviAII CATG 8 cut(s) 263, 299, 579, 592, 614, 715, 877, 981
CviQI GTAC 5 cut(s) 512, 582, 739, 861, 1157
DdeI CTNAG 5 cut(s) 192, 318, 327, 390, 474
DpnI GATC 6 cut(s) 18, 37, 433, 562, 598, 1060
DpnII GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 1209
EarI CTCTTC 1 cut(s) 1209
EciI GGCGGA 1 cut(s) 932
Eco130I CCWWGG 4 cut(s) 696, 852, 876, 980
Eco24I GRGCYC 2 cut(s) 938, 1240
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 3 cut(s) 483, 774, 1233
Eco91I GGTNACC 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 447
EcoRII CCWGG 2 cut(s) 135, 514
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 4 cut(s) 696, 852, 876, 980
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 938, 1240
ErhI CCWWGG 4 cut(s) 696, 852, 876, 980
FaeI CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 984
FaqI GGGAC 1 cut(s) 1238
FatI CATG 8 cut(s) 262, 298, 578, 591, 613, 714, 876, 980
Fnu4HI GCNGC 3 cut(s) 54, 540, 765
FokI GGATG 3 cut(s) 393, 637, 957
FriOI GRGCYC 2 cut(s) 938, 1240
Fsp4HI GCNGC 3 cut(s) 54, 540, 765
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 1066
GluI GCNGC 3 cut(s) 54, 540, 765
HaeIII GGCC 2 cut(s) 483, 881
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 1067
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 984
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 7 cut(s) 332, 488, 671, 689, 725, 1022, 1100
HphI GGTGA 4 cut(s) 109, 359, 426, 441
Hpy166II GTNNAC 3 cut(s) 336, 422, 741
Hpy188I TCNGA 6 cut(s) 21, 207, 288, 523, 823, 1213
Hpy188III TCNNGA 2 cut(s) 151, 845
Hpy8I GTNNAC 3 cut(s) 336, 422, 741
HpyAV CCTTC 6 cut(s) 344, 579, 749, 798, 1045, 1141
HpyCH4III ACNGT 2 cut(s) 772, 811
HpyCH4IV ACGT 2 cut(s) 418, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 5 cut(s) 192, 318, 327, 390, 474
HpySE526I ACGT 2 cut(s) 418, 1015
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 984
HspAI GCGC 1 cut(s) 1065
Kzo9I GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 3 cut(s) 65, 551, 776
LweI GCATC 4 cut(s) 70, 415, 751, 952
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 786
MaeII ACGT 2 cut(s) 418, 1015
MaeIII GTNAC 2 cut(s) 97, 447
MalI GATC 6 cut(s) 18, 37, 433, 562, 598, 1060
MboI GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
MboII GAAGA 7 cut(s) 111, 209, 269, 304, 671, 1124, 1226
MfeI CAATTG 4 cut(s) 61, 366, 1040, 1095
MflI RGATCY 2 cut(s) 560, 1058
MhlI GDGCHC 3 cut(s) 938, 1134, 1240
MlsI TGGCCA 1 cut(s) 881
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 2 cut(s) 341, 683
MmeI TCCRAC 1 cut(s) 669
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 881
MseI TTAA 3 cut(s) 144, 792, 990
MslI CAYNNNNRTG 2 cut(s) 590, 927
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 137, 516
MunI CAATTG 4 cut(s) 61, 366, 1040, 1095
MvaI CCWGG 2 cut(s) 137, 516
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 2 cut(s) 876, 980
NdeII GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
NlaIII CATG 8 cut(s) 266, 302, 582, 595, 617, 718, 880, 984
NlaIV GGNNCC 2 cut(s) 271, 781
NmuCI GTSAC 2 cut(s) 97, 447
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 2 cut(s) 266, 595
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 5 cut(s) 488, 671, 725, 1022, 1100
PkrI GCNGC 3 cut(s) 55, 541, 766
PleI GAGTC 2 cut(s) 340, 683
PpsI GAGTC 2 cut(s) 340, 683
Ppu21I YACGTR 2 cut(s) 419, 1016
PscI ACATGT 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 135, 514
PspEI GGTNACC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 135, 514
PspN4I GGNNCC 2 cut(s) 271, 781
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 2 cut(s) 283, 541
PsuI RGATCY 2 cut(s) 560, 1058
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 5 cut(s) 513, 583, 740, 862, 1158
RsaNI GTAC 5 cut(s) 512, 582, 739, 861, 1157
RseI CAYNNNNRTG 2 cut(s) 590, 927
SaqAI TTAA 3 cut(s) 144, 792, 990
SatI GCNGC 3 cut(s) 54, 540, 765
Sau3AI GATC 6 cut(s) 16, 35, 431, 560, 596, 1058
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 341, 683
ScrFI CCNGG 2 cut(s) 137, 516
SduI GDGCHC 3 cut(s) 938, 1134, 1240
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 4 cut(s) 70, 415, 751, 952
SfcI CTRYAG 2 cut(s) 279, 537
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 590, 927
SmlI CTYRAG 2 cut(s) 107, 143
SmoI CTYRAG 2 cut(s) 107, 143
SsiI CCGC 2 cut(s) 394, 917
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 135, 514
StyI CCWWGG 4 cut(s) 696, 852, 876, 980
TaaI ACNGT 2 cut(s) 772, 811
TaiI ACGT 2 cut(s) 421, 1018
TaqI TCGA 3 cut(s) 12, 869, 1020
TatI WGTACW 2 cut(s) 738, 860
TfiI GAWTC 5 cut(s) 488, 671, 725, 1022, 1100
Tru1I TTAA 3 cut(s) 144, 792, 990
Tru9I TTAA 3 cut(s) 144, 792, 990
TscAI CASTG 2 cut(s) 592, 777
TseFI GTSAC 2 cut(s) 97, 447
TseI GCWGC 3 cut(s) 53, 539, 764
Tsp45I GTSAC 2 cut(s) 97, 447
TspDTI ATGAA 5 cut(s) 111, 567, 731, 738, 1050
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 592, 777
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 1 cut(s) 460
XceI RCATGY 2 cut(s) 266, 595
XspI CTAG 1 cut(s) 786
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.