Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Forward (+)

67156539 .. 67159262

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTCTTGTCGAGGATCAGAGTGAAGCCACGGGATCAAACGCCTCTGTTGCAGCTGGCAATTGCAGTTCAAAAGGCGATGCTCAATCGAAATTTGTGACTGAACTCAAGGACATTTCTTCATTTGGCAATGACCAGGCACTTAAGGTCAGGAAACCTTACACAATTACAAAACAAAGAGAAAAATGGACTGAGGAAGAACATCAGAAGTTCCTTGAAGCCTTGAAATTGTATGGCAGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAAACTGCAGTTCAGATACGAAGTCATGCTCAAAAGTTCTTCTCTAAGGTAGCTAAGGAGTCAATTGGAAATGGTGAAGGCTCACTCAAACAAATTGAAATACCTCCTCCACGACCTAAGCGGAAACCTATGCATCCTTATCCACGTAAACTCAATGGATCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCGGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATGTAATTGGGTCTGCAGCTTTGGACCAGTATAACAGATCTCGACCTTCAACTTCATGTACCACTGACATGCGATCAACTAACTTATCCCATGTTGAGAAAGAGAATGACTATGCAACCTCCAACTCATCCCCTGAAGAAGCAAAAGAATCTATGCCACCTGCCGACTCAACCTTGGACGAACCTCTCTTCATGAAAGATGAATCGGCTTCCAAGTACACTTCAACTACTGAAGGAGATGCAGCCACAGTGGGAGGTTCCACTAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCAGACCTGCATAAACAATCTCCTCCTGATACCAAGGATTGTACTTTGTCGATATCCATCGCCAAACAAGAGAATTATGAGATTGAGTGTGGTAAGTTTGGTCAACCATTACAATGGGATCAATCGGACACACGCTTGTCACTTGGTGGAGTAGTTAGTAATTGGAATTCTTTGGCATGTGGTTCCACAATTAACAGGGCGGAACACCAAAAGATGGTGGTGCAAGCCAACCCTGCTGCTCCTCATCCCTTGCCATGGTGGGTTAATCTACCATTTTGTCAGGTCATACGTGTCGATTCTCGTGTTGATGAACAATTGAAAGAGAAGGAAAGATCTTGTGCTGGTTCAAACGATGGGTCAGTTAGTTCAATTGATTCTTTATGTGAAGAAGCTCGTAGTGTTGTGCCCTGCAATTCAAGGAAGGGGTTTGTACCATACAAAAGATGTTTAGCAGATACAAGCAGGAACTCATCGGTGATAGTATCTGAAGAGATGAGGGACAGACAAAGGGCTCGTGTTTGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

448

Amino Acids

49.28

Weight (kDa)

7.52

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	60 - 103	9.3e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	2 cut(s)	691, 834
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	1033
AciI	CCGC	2 cut(s)	394, 1019
AclWI	GGATC	4 cut(s)	24, 43, 439, 945
AcsI	RAATTY	3 cut(s)	92, 460, 985
AcuI	CTGAAG	4 cut(s)	483, 678, 774, 1326
AcyI	GRCGYC	1 cut(s)	247
AdeI	CACNNNGTG	1 cut(s)	965
AfaI	GTAC	5 cut(s)	513, 583, 740, 862, 1251
AfiI	CCNNNNNNNGG	2 cut(s)	1033, 1074
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	2 cut(s)	262, 1108
AjnI	CCWGG	2 cut(s)	135, 514
AluBI	AGCT	5 cut(s)	56, 326, 542, 796, 1211
AluI	AGCT	5 cut(s)	56, 326, 542, 796, 1211
AlwI	GGATC	4 cut(s)	24, 43, 439, 945
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	4 cut(s)	53, 539, 764, 1055
ApoI	RAATTY	3 cut(s)	92, 460, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	1160, 1192
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	4 cut(s)	359, 426, 441, 1306
AvaII	GGWCC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	1227
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	1333
BauI	CACGAG	2 cut(s)	1119, 1332
BbvI	GCAGC	4 cut(s)	65, 551, 776, 1042
BccI	CCATC	4 cut(s)	460, 884, 1027, 1166
BciT130I	CCWGG	2 cut(s)	137, 516
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	2 cut(s)	279, 537
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	691, 834
BglII	AGATCT	2 cut(s)	560, 1151
BisI	GCNGC	4 cut(s)	54, 540, 765, 1056
BlsI	GCNGC	4 cut(s)	55, 541, 766, 1057
Bme1390I	CCNGG	2 cut(s)	137, 516
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	271, 781, 1003
BmrFI	CCNGG	2 cut(s)	137, 516
BmsI	GCATC	3 cut(s)	70, 415, 751
Bpu10I	CCTNAGC	2 cut(s)	327, 390
BpuEI	CTTGAG	1 cut(s)	92
BsaAI	YACGTR	2 cut(s)	419, 1109
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	4 cut(s)	30, 696, 852, 1073
Bsc4I	CCNNNNNNNGG	2 cut(s)	1033, 1074
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	137, 516
BseDI	CCNNGG	4 cut(s)	30, 696, 852, 1073
BseGI	GGATG	3 cut(s)	406, 650, 1063
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	2 cut(s)	1033, 1074
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	183, 465
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	3 cut(s)	369, 831, 1050
BseSI	GKGCMC	1 cut(s)	1227
BseXI	GCAGC	4 cut(s)	65, 551, 776, 1042
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	1331
BslI	CCNNNNNNNGG	2 cut(s)	1033, 1074
BsmFI	GGGAC	1 cut(s)	1331
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	1227, 1333
Bsp143I	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
Bsp19I	CCATGG	1 cut(s)	1073
BspACI	CCGC	2 cut(s)	394, 1019
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	184, 466
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	3 cut(s)	271, 781, 1003
BspMAI	CTGCAG	2 cut(s)	283, 541
BspMI	ACCTGC	2 cut(s)	691, 834
BspPI	GGATC	4 cut(s)	24, 43, 439, 945
BspT107I	GGYRCC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	4 cut(s)	30, 696, 852, 1073
BssMI	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
BssNI	GRCGYC	1 cut(s)	247
BssSI	CACGAG	2 cut(s)	1119, 1332
BssT1I	CCWWGG	3 cut(s)	696, 852, 1073
Bst2BI	CACGAG	2 cut(s)	1119, 1332
Bst2UI	CCWGG	2 cut(s)	137, 516
Bst4CI	ACNGT	2 cut(s)	772, 811
Bst6I	CTCTTC	2 cut(s)	716, 1302
BstACI	GRCGYC	1 cut(s)	247
BstAFI	CTTAAG	1 cut(s)	143
BstBAI	YACGTR	2 cut(s)	419, 1109
BstC8I	GCNNGC	2 cut(s)	58, 1044
BstDEI	CTNAG	5 cut(s)	192, 318, 327, 390, 474
BstDSI	CCRYGG	2 cut(s)	30, 1073
BstEII	GGTNACC	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	406, 650, 1063
BstKTI	GATC	7 cut(s)	19, 38, 434, 563, 599, 940, 1154
BstMBI	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 1052
BstNI	CCWGG	2 cut(s)	137, 516
BstNSI	RCATGY	3 cut(s)	266, 595, 999
BstPI	GGTNACC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	135, 514
BstSFI	CTRYAG	2 cut(s)	279, 537
BstSLI	GKGCMC	1 cut(s)	1227
BstV1I	GCAGC	4 cut(s)	65, 551, 776, 1042
BstX2I	RGATCY	2 cut(s)	560, 1151
BstXI	CCANNNNNNTGG	1 cut(s)	933
BstYI	RGATCY	2 cut(s)	560, 1151
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	30, 1073
BtgZI	GCGATG	3 cut(s)	93, 438, 862
BtsCI	GGATG	3 cut(s)	406, 650, 1063
BtsIMutI	CAGTG	2 cut(s)	585, 777
BveI	ACCTGC	2 cut(s)	691, 834
Cac8I	GCNNGC	2 cut(s)	58, 1044
CciI	TCATGA	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	514
Csp6I	GTAC	5 cut(s)	512, 582, 739, 861, 1250
CviAII	CATG	8 cut(s)	263, 299, 579, 592, 614, 715, 996, 1074
CviQI	GTAC	5 cut(s)	512, 582, 739, 861, 1250
DdeI	CTNAG	5 cut(s)	192, 318, 327, 390, 474
DpnI	GATC	7 cut(s)	18, 37, 433, 562, 598, 939, 1153
DpnII	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
DraIII	CACNNNGTG	1 cut(s)	965
Eam1104I	CTCTTC	2 cut(s)	716, 1302
EarI	CTCTTC	2 cut(s)	716, 1302
EciI	GGCGGA	1 cut(s)	1034
Eco130I	CCWWGG	3 cut(s)	696, 852, 1073
Eco24I	GRGCYC	1 cut(s)	1333
Eco32I	GATATC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	4 cut(s)	483, 678, 774, 1326
Eco91I	GGTNACC	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	2 cut(s)	135, 514
EcoRV	GATATC	1 cut(s)	873
EcoT14I	CCWWGG	3 cut(s)	696, 852, 1073
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	1333
ErhI	CCWWGG	3 cut(s)	696, 852, 1073
FaeI	CATG	8 cut(s)	266, 302, 582, 595, 617, 718, 999, 1077
FaqI	GGGAC	1 cut(s)	1331
FatI	CATG	8 cut(s)	262, 298, 578, 591, 613, 714, 995, 1073
Fnu4HI	GCNGC	4 cut(s)	54, 540, 765, 1056
FokI	GGATG	3 cut(s)	393, 637, 1050
FriOI	GRGCYC	1 cut(s)	1333
Fsp4HI	GCNGC	4 cut(s)	54, 540, 765, 1056
FspBI	CTAG	1 cut(s)	786
GluI	GCNGC	4 cut(s)	54, 540, 765, 1056
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	8 cut(s)	266, 302, 582, 595, 617, 718, 999, 1077
HincII	GTYRAC	1 cut(s)	923
HindII	GTYRAC	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	7 cut(s)	332, 488, 671, 689, 725, 1115, 1193
HphI	GGTGA	4 cut(s)	359, 426, 441, 1306
Hpy166II	GTNNAC	3 cut(s)	422, 741, 923
Hpy188I	TCNGA	7 cut(s)	21, 207, 288, 523, 823, 946, 1306
Hpy188III	TCNNGA	4 cut(s)	151, 564, 715, 845
Hpy8I	GTNNAC	3 cut(s)	422, 741, 923
HpyAV	CCTTC	6 cut(s)	344, 579, 749, 798, 1138, 1234
HpyCH4III	ACNGT	2 cut(s)	772, 811
HpyCH4IV	ACGT	2 cut(s)	418, 1108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 1052
HpyF3I	CTNAG	5 cut(s)	192, 318, 327, 390, 474
HpySE526I	ACGT	2 cut(s)	418, 1108
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	8 cut(s)	266, 302, 582, 595, 617, 718, 999, 1077
Kzo9I	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	4 cut(s)	65, 551, 776, 1042
LweI	GCATC	3 cut(s)	70, 415, 751
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	2 cut(s)	418, 1108
MaeIII	GTNAC	3 cut(s)	97, 447, 957
MalI	GATC	7 cut(s)	18, 37, 433, 562, 598, 939, 1153
MboI	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
MboII	GAAGA	8 cut(s)	111, 209, 269, 304, 671, 703, 1217, 1319
MfeI	CAATTG	4 cut(s)	61, 336, 1133, 1188
MflI	RGATCY	2 cut(s)	560, 1151
MhlI	GDGCHC	2 cut(s)	1227, 1333
MlyI	GAGTC	2 cut(s)	341, 683
MmeI	TCCRAC	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	4 cut(s)	144, 792, 1011, 1083
MslI	CAYNNNNRTG	2 cut(s)	590, 931
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	137, 516
MunI	CAATTG	4 cut(s)	61, 336, 1133, 1188
MvaI	CCWGG	2 cut(s)	137, 516
MwoI	GCNNNNNNNGC	2 cut(s)	50, 1052
NcoI	CCATGG	1 cut(s)	1073
NdeII	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
NlaIII	CATG	8 cut(s)	266, 302, 582, 595, 617, 718, 999, 1077
NlaIV	GGNNCC	3 cut(s)	271, 781, 1003
NmuCI	GTSAC	3 cut(s)	97, 447, 957
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	3 cut(s)	266, 595, 999
PagI	TCATGA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	691
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	5 cut(s)	488, 671, 725, 1115, 1193
PflMI	CCANNNNNTGG	1 cut(s)	1033
PkrI	GCNGC	4 cut(s)	55, 541, 766, 1057
PleI	GAGTC	2 cut(s)	340, 683
PpsI	GAGTC	2 cut(s)	340, 683
Ppu21I	YACGTR	2 cut(s)	419, 1109
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	135, 514
PspEI	GGTNACC	1 cut(s)	447
PspGI	CCWGG	2 cut(s)	135, 514
PspN4I	GGNNCC	3 cut(s)	271, 781, 1003
PspPI	GGNCC	1 cut(s)	547
PstI	CTGCAG	2 cut(s)	283, 541
PsuI	RGATCY	2 cut(s)	560, 1151
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	5 cut(s)	513, 583, 740, 862, 1251
RsaNI	GTAC	5 cut(s)	512, 582, 739, 861, 1250
RseI	CAYNNNNRTG	2 cut(s)	590, 931
SaqAI	TTAA	4 cut(s)	144, 792, 1011, 1083
SatI	GCNGC	4 cut(s)	54, 540, 765, 1056
Sau3AI	GATC	7 cut(s)	16, 35, 431, 560, 596, 937, 1151
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	2 cut(s)	341, 683
ScrFI	CCNGG	2 cut(s)	137, 516
SduI	GDGCHC	2 cut(s)	1227, 1333
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	3 cut(s)	70, 415, 751
SfcI	CTRYAG	2 cut(s)	279, 537
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	590, 931
SmlI	CTYRAG	2 cut(s)	107, 143
SmoI	CTYRAG	2 cut(s)	107, 143
SsiI	CCGC	2 cut(s)	394, 1019
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	2 cut(s)	135, 514
StyI	CCWWGG	3 cut(s)	696, 852, 1073
TaaI	ACNGT	2 cut(s)	772, 811
TaiI	ACGT	2 cut(s)	421, 1111
TaqI	TCGA	5 cut(s)	12, 89, 565, 869, 1113
TatI	WGTACW	2 cut(s)	738, 860
TfiI	GAWTC	5 cut(s)	488, 671, 725, 1115, 1193
Tru1I	TTAA	4 cut(s)	144, 792, 1011, 1083
Tru9I	TTAA	4 cut(s)	144, 792, 1011, 1083
TscAI	CASTG	2 cut(s)	592, 777
TseFI	GTSAC	3 cut(s)	97, 447, 957
TseI	GCWGC	4 cut(s)	53, 539, 764, 1055
Tsp45I	GTSAC	3 cut(s)	97, 447, 957
TspDTI	ATGAA	7 cut(s)	111, 567, 703, 731, 738, 1143, 1332
TspRI	CASTG	2 cut(s)	592, 777
Van91I	CCANNNNNTGG	1 cut(s)	1033
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	3 cut(s)	92, 460, 985
XceI	RCATGY	3 cut(s)	266, 595, 999
XspI	CTAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.