Rh7DG006000
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008575
Physical Location & Seq
Reverse (-)
506761 .. 509813
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG006000.1

Sequence Viewer

Length: 1356 bp
ATGGCTCTTGTCGAGGATCAGAGTGAAGCCACGGGATCAAACGCCTCTGTTGCAGCTGGCAATTGCAGTTCAAAAGGCGATGCTCAATCAAAATTGGTGACTGAACTCAAGGACATTTCTTCATTTGGCAATGACCAGGCACTTAAGGTCAGGAAACCTTACACAATTACAAAACAAAGAGAAAAATGGACTGAGGAAGAACATCAGAAGTTCCTTGAAGCCTTGAAATTGTATGGCAGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAAACTGCAGTTCAGATACGTAGTCATGCTCAAAAGTTCTTCTCTAAGGTAGCTAAGGAGTCAACTGGAAATGGTGAAGGCTCACTCAAACCAATTGAAATACCTCCTCCACGACCTAAGCGGAAACCTATGCATCCTTATCCACGTAAACTCAATGGATCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCGGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATGTAATTGGGTCTGCAGCTTTGGACCAGTATAACAGATCTCGATCTTCAACTTCATGTACCACTGACATGCGATCAACCAACTTATCCCATGTTGAGAAAGAGAATGACTATGCAACCTCCAACTCATCCCTTGAAGAAGCAAAAGAATCTATGCCACCTGCTGACTCAACCTTGGACGAACCTCTCTCCATGAAAGATGAATCGGCTTCCAAGTACACTTCAACTACTGAAGGAGATGCAGCCACAGTGGGAGGTTCCACTAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCAGACCTGCATAGACAATCTCCTCCTGATACCAAGGATTGTATTCTGTCGATATCCATGGCCAAACAAGAGAATTATGAGATTGAGTGTGGTAAGTTTGGTCAACCATTACAATGGGATCAATCGGACACACGCTTGTCACTTGGTGGAGTAGTTAGTAATTGGAATTCTTTGGCATGTGGTTCCACAATTGACAGGTCGGAACACCAAAATGAGAGCCCCAAGTCTGTGCAAGCCAACCCCGATGCTCCTCATCCCTTGCCATGGTGGGTTAATCTACCATTTTGTCAGGTCATACGTGTCGATTCTCGTGTTGATGAACAATTGAAAGAGAAGGAAAGATCTTGCGCTGGTTCAAACGATGGGTCAGTTAGTTCAATTGATTCTTTATGTGAAGAAGCTCGTAGTGTTGTGCCCTGCAATTCAAGGAAGGGGTTTGTACCATACAAAAGATGTTTAGCAGATACAAACAGGAACTCATCGGTGATAGTATCGGAAGAGATGAGGGACAGACAAAGGGCTCGTGTTTGCTCATAA

Protein Analysis

451

Amino Acids

49.58

Weight (kDa)

6.49

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 60 - 103 9.4e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 2 cut(s) 691, 834
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 1 cut(s) 394
AclWI GGATC 4 cut(s) 24, 43, 439, 945
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 2 cut(s) 460, 985
AcuI CTGAAG 2 cut(s) 483, 774
AcyI GRCGYC 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 965
AfaI GTAC 4 cut(s) 513, 583, 740, 1260
AfiI CCNNNNNNNGG 1 cut(s) 1083
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 262, 1117
AjnI CCWGG 2 cut(s) 135, 514
AluBI AGCT 5 cut(s) 56, 326, 542, 796, 1220
AluI AGCT 5 cut(s) 56, 326, 542, 796, 1220
AlwI GGATC 4 cut(s) 24, 43, 439, 945
AoxI GGCC 2 cut(s) 481, 879
ApeKI GCWGC 3 cut(s) 53, 539, 764
ApoI RAATTY 2 cut(s) 460, 985
ArsI GACNNNNNNTTYG 2 cut(s) 1169, 1201
AspLEI GCGC 1 cut(s) 1169
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 5 cut(s) 109, 359, 426, 441, 1315
AvaII GGWCC 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 1236
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 1040, 1342
BauI CACGAG 2 cut(s) 1128, 1341
BbvI GCAGC 3 cut(s) 65, 551, 776
BccI CCATC 2 cut(s) 460, 1175
BciT130I CCWGG 2 cut(s) 137, 516
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 2 cut(s) 279, 537
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 691, 834
BglII AGATCT 2 cut(s) 560, 1160
BisI GCNGC 3 cut(s) 54, 540, 765
BlsI GCNGC 3 cut(s) 55, 541, 766
Bme1390I CCNGG 2 cut(s) 137, 516
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 3 cut(s) 271, 781, 1003
BmrFI CCNGG 2 cut(s) 137, 516
BmsI GCATC 4 cut(s) 70, 415, 751, 1054
Bpu10I CCTNAGC 2 cut(s) 327, 390
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 3 cut(s) 293, 419, 1118
BsaBI GATNNNNATC 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 5 cut(s) 30, 696, 852, 876, 1082
Bsc4I CCNNNNNNNGG 1 cut(s) 1083
Bse1I ACTGG 2 cut(s) 343, 550
Bse3DI GCAATG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 565
BseBI CCWGG 2 cut(s) 137, 516
BseDI CCNNGG 5 cut(s) 30, 696, 852, 876, 1082
BseGI GGATG 3 cut(s) 406, 650, 1072
BseJI GATNNNNATC 1 cut(s) 565
BseLI CCNNNNNNNGG 1 cut(s) 1083
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 183, 465
BseNI ACTGG 2 cut(s) 343, 550
BseRI GAGGAG 3 cut(s) 369, 831, 1059
BseSI GKGCMC 1 cut(s) 1236
BseXI GCAGC 3 cut(s) 65, 551, 776
BshFI GGCC 2 cut(s) 483, 881
BshNI GGYRCC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 1340
BslI CCNNNNNNNGG 1 cut(s) 1083
BsmFI GGGAC 1 cut(s) 1340
BsnI GGCC 2 cut(s) 483, 881
Bsp1286I GDGCHC 3 cut(s) 1040, 1236, 1342
Bsp143I GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
Bsp19I CCATGG 2 cut(s) 876, 1082
BspACI CCGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 483, 881
BspCNI CTCAG 2 cut(s) 184, 466
BspLI GGNNCC 3 cut(s) 271, 781, 1003
BspMAI CTGCAG 2 cut(s) 283, 541
BspMI ACCTGC 2 cut(s) 691, 834
BspPI GGATC 4 cut(s) 24, 43, 439, 945
BspT107I GGYRCC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 343, 550
BssECI CCNNGG 5 cut(s) 30, 696, 852, 876, 1082
BssMI GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
BssNI GRCGYC 1 cut(s) 247
BssSI CACGAG 2 cut(s) 1128, 1341
BssT1I CCWWGG 4 cut(s) 696, 852, 876, 1082
Bst2BI CACGAG 2 cut(s) 1128, 1341
Bst2UI CCWGG 2 cut(s) 137, 516
Bst4CI ACNGT 2 cut(s) 772, 811
Bst6I CTCTTC 1 cut(s) 1311
BstACI GRCGYC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 3 cut(s) 293, 419, 1118
BstC8I GCNNGC 2 cut(s) 58, 1053
BstDEI CTNAG 5 cut(s) 192, 318, 327, 390, 474
BstDSI CCRYGG 3 cut(s) 30, 876, 1082
BstEII GGTNACC 1 cut(s) 447
BstF5I GGATG 3 cut(s) 406, 650, 1072
BstHHI GCGC 1 cut(s) 1169
BstKTI GATC 8 cut(s) 19, 38, 434, 563, 569, 599, 940, 1163
BstMBI GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 137, 516
BstNSI RCATGY 3 cut(s) 266, 595, 999
BstPI GGTNACC 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 135, 514
BstSFI CTRYAG 2 cut(s) 279, 537
BstSLI GKGCMC 1 cut(s) 1236
BstSNI TACGTA 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 65, 551, 776
BstX2I RGATCY 2 cut(s) 560, 1160
BstXI CCANNNNNNTGG 1 cut(s) 933
BstYI RGATCY 2 cut(s) 560, 1160
BsuRI GGCC 2 cut(s) 483, 881
BtgI CCRYGG 3 cut(s) 30, 876, 1082
BtgZI GCGATG 2 cut(s) 93, 438
BtsCI GGATG 3 cut(s) 406, 650, 1072
BtsIMutI CAGTG 2 cut(s) 585, 777
BveI ACCTGC 2 cut(s) 691, 834
Cac8I GCNNGC 2 cut(s) 58, 1053
CfoI GCGC 1 cut(s) 1169
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 4 cut(s) 512, 582, 739, 1259
CviAII CATG 9 cut(s) 263, 299, 579, 592, 614, 715, 877, 996, 1083
CviQI GTAC 4 cut(s) 512, 582, 739, 1259
DdeI CTNAG 5 cut(s) 192, 318, 327, 390, 474
DpnI GATC 8 cut(s) 18, 37, 433, 562, 568, 598, 939, 1162
DpnII GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
DraIII CACNNNGTG 1 cut(s) 965
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 1311
EarI CTCTTC 1 cut(s) 1311
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 4 cut(s) 696, 852, 876, 1082
Eco24I GRGCYC 2 cut(s) 1040, 1342
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 483, 774
Eco91I GGTNACC 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 135, 514
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 4 cut(s) 696, 852, 876, 1082
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 1040, 1342
ErhI CCWWGG 4 cut(s) 696, 852, 876, 1082
FaeI CATG 9 cut(s) 266, 302, 582, 595, 617, 718, 880, 999, 1086
FaqI GGGAC 1 cut(s) 1340
FatI CATG 9 cut(s) 262, 298, 578, 591, 613, 714, 876, 995, 1082
Fnu4HI GCNGC 3 cut(s) 54, 540, 765
FokI GGATG 3 cut(s) 393, 637, 1059
FriOI GRGCYC 2 cut(s) 1040, 1342
Fsp4HI GCNGC 3 cut(s) 54, 540, 765
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 1168
GluI GCNGC 3 cut(s) 54, 540, 765
HaeIII GGCC 2 cut(s) 483, 881
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 1169
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 9 cut(s) 266, 302, 582, 595, 617, 718, 880, 999, 1086
Hin6I GCGC 1 cut(s) 1167
HinP1I GCGC 1 cut(s) 1167
HincII GTYRAC 2 cut(s) 336, 923
HindII GTYRAC 2 cut(s) 336, 923
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 7 cut(s) 332, 488, 671, 689, 725, 1124, 1202
HphI GGTGA 5 cut(s) 109, 359, 426, 441, 1315
Hpy166II GTNNAC 4 cut(s) 336, 422, 741, 923
Hpy188I TCNGA 8 cut(s) 21, 207, 288, 523, 823, 946, 1021, 1315
Hpy188III TCNNGA 3 cut(s) 151, 564, 845
Hpy8I GTNNAC 4 cut(s) 336, 422, 741, 923
HpyAV CCTTC 5 cut(s) 344, 749, 798, 1147, 1243
HpyCH4III ACNGT 2 cut(s) 772, 811
HpyCH4IV ACGT 3 cut(s) 292, 418, 1117
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 5 cut(s) 192, 318, 327, 390, 474
HpySE526I ACGT 3 cut(s) 292, 418, 1117
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 9 cut(s) 266, 302, 582, 595, 617, 718, 880, 999, 1086
HspAI GCGC 1 cut(s) 1167
Kzo9I GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
LmnI GCTCC 1 cut(s) 1072
Lsp1109I GCAGC 3 cut(s) 65, 551, 776
LweI GCATC 4 cut(s) 70, 415, 751, 1054
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 786
MaeII ACGT 3 cut(s) 292, 418, 1117
MaeIII GTNAC 3 cut(s) 97, 447, 957
MalI GATC 8 cut(s) 18, 37, 433, 562, 568, 598, 939, 1162
MboI GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
MboII GAAGA 8 cut(s) 111, 209, 269, 304, 561, 671, 1226, 1328
MfeI CAATTG 5 cut(s) 61, 366, 1008, 1142, 1197
MflI RGATCY 2 cut(s) 560, 1160
MhlI GDGCHC 3 cut(s) 1040, 1236, 1342
MlsI TGGCCA 1 cut(s) 881
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 2 cut(s) 341, 683
MmeI TCCRAC 2 cut(s) 669, 999
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 881
MseI TTAA 3 cut(s) 144, 792, 1092
MslI CAYNNNNRTG 3 cut(s) 590, 931, 1029
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 137, 516
MunI CAATTG 5 cut(s) 61, 366, 1008, 1142, 1197
MvaI CCWGG 2 cut(s) 137, 516
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 2 cut(s) 876, 1082
NdeII GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
NlaIII CATG 9 cut(s) 266, 302, 582, 595, 617, 718, 880, 999, 1086
NlaIV GGNNCC 3 cut(s) 271, 781, 1003
NmuCI GTSAC 3 cut(s) 97, 447, 957
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 3 cut(s) 266, 595, 999
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 5 cut(s) 488, 671, 725, 1124, 1202
PkrI GCNGC 3 cut(s) 55, 541, 766
PleI GAGTC 2 cut(s) 340, 683
PpsI GAGTC 2 cut(s) 340, 683
Ppu21I YACGTR 3 cut(s) 293, 419, 1118
PscI ACATGT 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 135, 514
PspEI GGTNACC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 135, 514
PspN4I GGNNCC 3 cut(s) 271, 781, 1003
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 2 cut(s) 283, 541
PsuI RGATCY 2 cut(s) 560, 1160
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 4 cut(s) 513, 583, 740, 1260
RsaNI GTAC 4 cut(s) 512, 582, 739, 1259
RseI CAYNNNNRTG 3 cut(s) 590, 931, 1029
SaqAI TTAA 3 cut(s) 144, 792, 1092
SatI GCNGC 3 cut(s) 54, 540, 765
Sau3AI GATC 8 cut(s) 16, 35, 431, 560, 566, 596, 937, 1160
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 341, 683
ScrFI CCNGG 2 cut(s) 137, 516
SduI GDGCHC 3 cut(s) 1040, 1236, 1342
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 4 cut(s) 70, 415, 751, 1054
SfcI CTRYAG 2 cut(s) 279, 537
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 3 cut(s) 590, 931, 1029
SmlI CTYRAG 2 cut(s) 107, 143
SmoI CTYRAG 2 cut(s) 107, 143
SnaBI TACGTA 1 cut(s) 293
SsiI CCGC 1 cut(s) 394
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 135, 514
StyI CCWWGG 4 cut(s) 696, 852, 876, 1082
TaaI ACNGT 2 cut(s) 772, 811
TaiI ACGT 3 cut(s) 295, 421, 1120
TaqI TCGA 4 cut(s) 12, 565, 869, 1122
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 5 cut(s) 488, 671, 725, 1124, 1202
Tru1I TTAA 3 cut(s) 144, 792, 1092
Tru9I TTAA 3 cut(s) 144, 792, 1092
TscAI CASTG 2 cut(s) 592, 777
TseFI GTSAC 3 cut(s) 97, 447, 957
TseI GCWGC 3 cut(s) 53, 539, 764
Tsp45I GTSAC 3 cut(s) 97, 447, 957
TspDTI ATGAA 5 cut(s) 111, 567, 731, 738, 1152
TspRI CASTG 2 cut(s) 592, 777
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 2 cut(s) 460, 985
XceI RCATGY 3 cut(s) 266, 595, 999
XspI CTAG 1 cut(s) 786
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.