Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Reverse (-)

3117896 .. 3119391

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10113.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTAATGATGATTATTATATATACCGAACCCGAAATCAGCTTGTTTCCACTTCAGGATCGAAGTGAGGAACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAATTAATCCTGAAACCAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCAGAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGGTCGTGGGTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCGCTGTACAGATACGAAGCCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGACAGTAGAAGTGAAGGATCGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATCCTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAATTTGTCAGCTATGGAGAAAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCAGAGGATCAAAATAACTACACAACATCCAAGCAACCTTTCAAAGATGATTCTGACATTGGTTCAACACCCATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCTCACAAACCATCCTCTTACAATGATGATGATCTTAAACAAATGACGTGTCAGGAGAATCACTACTCAGGGATGCTAGTTGACACTAATTTATCTCTTGGTGTATGGGAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTGAGAACTTGGAGAAGAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAGAAAAACAAGGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCCTATCAGAAAGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCCAAAGAGCACGTATATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.6

Weight (kDa)

7.05

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	65 - 108	4.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	68 - 122	7.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	644
AciI	CCGC	3 cut(s)	294, 392, 644
AclI	AACGTT	2 cut(s)	153, 764
AclWI	GGATC	5 cut(s)	66, 376, 382, 546, 889
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	38, 957
AcyI	GRCGYC	1 cut(s)	262
AfaI	GTAC	4 cut(s)	176, 286, 300, 772
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	5 cut(s)	149, 233, 574, 597, 609
AjiI	CACGTC	1 cut(s)	699
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	7 cut(s)	42, 236, 244, 350, 482, 864, 971
AluI	AGCT	7 cut(s)	42, 236, 244, 350, 482, 864, 971
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	2 cut(s)	465, 507
AlwI	GGATC	5 cut(s)	66, 376, 382, 546, 889
AoxI	GGCC	1 cut(s)	914
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AseI	ATTAAT	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	331, 670
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BcoDI	GTCTC	2 cut(s)	465, 507
BfaI	CTAG	2 cut(s)	728, 1009
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmgBI	CACGTC	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	496
BmsI	GCATC	3 cut(s)	714, 815, 917
Bpu10I	CCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	1001
BsaBI	GATNNNNATC	3 cut(s)	386, 681, 931
BsaHI	GRCGYC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	4 cut(s)	445, 475, 487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	1 cut(s)	88
Bse8I	GATNNNNATC	3 cut(s)	386, 681, 931
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	4 cut(s)	421, 557, 662, 729
BseJI	GATNNNNATC	3 cut(s)	386, 681, 931
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	5 cut(s)	356, 470, 525, 732, 801
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	2 cut(s)	387, 453
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	849
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	916
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	465, 507
BsnI	GGCC	1 cut(s)	916
Bsp1286I	GDGCHC	1 cut(s)	1000
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
BspACI	CCGC	3 cut(s)	294, 392, 644
BspANI	GGCC	1 cut(s)	916
BspCNI	CTCAG	5 cut(s)	355, 469, 524, 731, 802
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	5 cut(s)	66, 376, 382, 546, 889
BspQI	GCTCTTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	778
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
BssNI	GRCGYC	1 cut(s)	262
Bst4CI	ACNGT	4 cut(s)	174, 181, 356, 858
Bst6I	CTCTTC	2 cut(s)	207, 818
BstACI	GRCGYC	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	1001
BstDEI	CTNAG	8 cut(s)	74, 186, 342, 456, 511, 718, 810, 868
BstF5I	GGATG	4 cut(s)	421, 557, 662, 729
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	6 cut(s)	61, 371, 390, 541, 685, 884
BstMAI	GTCTC	2 cut(s)	465, 507
BstMBI	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	881
BsuRI	GGCC	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	699
BtsCI	GGATG	4 cut(s)	421, 557, 662, 729
BtsIMutI	CAGTG	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	415
CseI	GACGC	2 cut(s)	251, 970
Csp6I	GTAC	4 cut(s)	175, 285, 299, 771
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	3 cut(s)	218, 314, 849
CviQI	GTAC	4 cut(s)	175, 285, 299, 771
DdeI	CTNAG	8 cut(s)	74, 186, 342, 456, 511, 718, 810, 868
DpnI	GATC	6 cut(s)	60, 370, 389, 540, 684, 883
DpnII	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
Eam1104I	CTCTTC	2 cut(s)	207, 818
EarI	CTCTTC	2 cut(s)	207, 818
Eco57I	CTGAAG	2 cut(s)	38, 957
EcoT22I	ATGCAT	1 cut(s)	787
FaeI	CATG	3 cut(s)	221, 317, 852
FatI	CATG	3 cut(s)	217, 313, 848
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	4 cut(s)	408, 544, 649, 736
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	728, 1009
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	916
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	2 cut(s)	251, 970
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	221, 317, 852
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	3 cut(s)	581, 650, 709
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	177, 733
Hpy188I	TCNGA	6 cut(s)	435, 535, 586, 811, 937, 976
Hpy188III	TCNNGA	6 cut(s)	56, 125, 230, 344, 625, 704
Hpy8I	GTNNAC	2 cut(s)	177, 733
HpyAV	CCTTC	2 cut(s)	107, 359
HpyCH4III	ACNGT	4 cut(s)	174, 181, 356, 858
HpyCH4IV	ACGT	4 cut(s)	153, 698, 764, 1000
HpyCH4V	TGCA	4 cut(s)	102, 785, 830, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	8 cut(s)	74, 186, 342, 456, 511, 718, 810, 868
HpySE526I	ACGT	4 cut(s)	153, 698, 764, 1000
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	221, 317, 852
Kzo9I	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	3 cut(s)	714, 815, 917
MaeI	CTAG	2 cut(s)	728, 1009
MaeII	ACGT	4 cut(s)	153, 698, 764, 1000
MaeIII	GTNAC	3 cut(s)	181, 796, 946
MalI	GATC	6 cut(s)	60, 370, 389, 540, 684, 883
MboI	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
MboII	GAAGA	6 cut(s)	224, 319, 640, 659, 835, 837
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	1 cut(s)	1000
MluCI	AATT	4 cut(s)	103, 117, 472, 739
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	9 cut(s)	61, 202, 405, 408, 441, 474, 520, 529, 676
Mph1103I	ATGCAT	1 cut(s)	787
MseI	TTAA	4 cut(s)	120, 375, 687, 860
MslI	CAYNNNNRTG	1 cut(s)	1003
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
NlaIII	CATG	3 cut(s)	221, 317, 852
NlaIV	GGNNCC	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	259, 377
PfeI	GAWTC	3 cut(s)	581, 650, 709
PkrI	GCNGC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	1001
PshBI	ATTAAT	1 cut(s)	120
Psp1406I	AACGTT	2 cut(s)	153, 764
PspN4I	GGNNCC	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	881
RsaI	GTAC	4 cut(s)	176, 286, 300, 772
RsaNI	GTAC	4 cut(s)	175, 285, 299, 771
RseI	CAYNNNNRTG	1 cut(s)	1003
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	120, 375, 687, 860
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	6 cut(s)	58, 368, 387, 538, 682, 881
SduI	GDGCHC	1 cut(s)	1000
SfaNI	GCATC	3 cut(s)	714, 815, 917
SmiMI	CAYNNNNRTG	1 cut(s)	1003
Sse9I	AATT	4 cut(s)	103, 117, 472, 739
SsiI	CCGC	3 cut(s)	294, 392, 644
SspMI	CTAG	2 cut(s)	728, 1009
TaaI	ACNGT	4 cut(s)	174, 181, 356, 858
TaiI	ACGT	4 cut(s)	156, 701, 767, 1003
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	103, 117, 472, 739
TatI	WGTACW	2 cut(s)	298, 770
TfiI	GAWTC	3 cut(s)	581, 650, 709
Tru1I	TTAA	4 cut(s)	120, 375, 687, 860
Tru9I	TTAA	4 cut(s)	120, 375, 687, 860
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	3 cut(s)	126, 837, 993
TspRI	CASTG	1 cut(s)	519
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	472
XspI	CTAG	2 cut(s)	728, 1009
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.