Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458561.1

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1774

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

cagagtgaagccacgggatcaaacgcctctgttgcagctggcaattgcagttcaaaaggcgatgctcaatcaaaattggtgactgaactcaaggacacttcttcatttggcaatgaccaggcacttaaggtcaggaaaccttacacaattacaaaacaaagagaaaaatggactgaggaagaacatcagaagttccttgaagctttgaaattgtatggcagaggttggcgtcaaatagaagaacatgtaggcaccaaaactgcagttcagatacgaagtcatgctcaaaagttcttctctaaggtagctaaggagtcaactggaaatggtgaaggctcactcaaaccaattgaaatacctcctccacgacctaagcggaaacctatgcatccttatccacgtaaactcaatggatcacctgaaaggaggtcaccatcgccaaatttttcggttgctgagaaaggccaagaatcccccacttcggtattgtctgtacctggttctgatgtaattgggtctgcagctttggaccagtataacagatctcgaccttcaacttcatgtaccactgacatgcgatcaaccaacttatcccatgttgagaaagagaatgactatgcaacctccaactcatcccttgaagaagcaaaagaatctatgccacctgccgactcaaccttggacgaacctctctccatgaaagatgaatcggcttccaagtacacttcaactactgaaggagatgcagccacagtgggaggttccactagcattaagctttttggaaggacagttttggtgtcagacctgcataaacaatctcctcctgataccaagggttgtactctgtcgatatccatggccaaacaagagaattatgagattgagtgtggtaagtttggtcaaccattacaatgggatcaatcggacacacgcttgtcacttggtggagtagttagtaattggaattctttggcatgtggttccacaattgacaggtcggaacaccaaaatgagagccccaagtctgtgcaagccaaccccgatgctcttcatcccttgccatggtgggttaatctaccattttgtcaggtcatacgtctcaattctcgtgttgatgaacaattgaaagagaaggaaagatcttgcgctggttcaaacgatgggtcagttagttcaattgattctttatgtgaagaagctcgtagtgttgtgccctgcaattcaaggaaggggtttgtaccatacaaaagatgtttagcagatacaaacaggaactcatcggtgatagtatctgaagagatgagggacagacaaagggctcgtgtttgctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

445

Amino Acids

48.85

Weight (kDa)

7.98

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	2 cut(s)	673, 816
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	3 cut(s)	25, 421, 927
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	442, 967
AcuI	CTGAAG	2 cut(s)	756, 1317
AcyI	GRCGYC	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	947
AfaI	GTAC	5 cut(s)	495, 565, 722, 844, 1242
AfiI	CCNNNNNNNGG	2 cut(s)	481, 1065
AflII	CTTAAG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	117, 496
AluBI	AGCT	6 cut(s)	38, 203, 308, 524, 778, 1202
AluI	AGCT	6 cut(s)	38, 203, 308, 524, 778, 1202
Alw26I	GTCTC	1 cut(s)	1106
AlwI	GGATC	3 cut(s)	25, 421, 927
AoxI	GGCC	2 cut(s)	463, 861
ApeKI	GCWGC	3 cut(s)	35, 521, 746
ApoI	RAATTY	2 cut(s)	442, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	1151, 1183
AspLEI	GCGC	1 cut(s)	1151
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	5 cut(s)	91, 341, 408, 423, 1297
AvaII	GGWCC	1 cut(s)	529
BaeGI	GKGCMC	1 cut(s)	1218
BalI	TGGCCA	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	1022, 1324
BauI	CACGAG	2 cut(s)	1110, 1323
BbvI	GCAGC	3 cut(s)	47, 533, 758
BccI	CCATC	2 cut(s)	442, 1157
BciT130I	CCWGG	2 cut(s)	119, 498
BcoDI	GTCTC	1 cut(s)	1106
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	2 cut(s)	261, 519
BfrI	CTTAAG	1 cut(s)	125
BfuAI	ACCTGC	2 cut(s)	673, 816
BglII	AGATCT	2 cut(s)	542, 1142
BisI	GCNGC	3 cut(s)	36, 522, 747
BlsI	GCNGC	3 cut(s)	37, 523, 748
Bme1390I	CCNGG	2 cut(s)	119, 498
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	3 cut(s)	253, 763, 985
BmrFI	CCNGG	2 cut(s)	119, 498
BmsI	GCATC	4 cut(s)	52, 397, 733, 1036
Bpu10I	CCTNAGC	2 cut(s)	309, 372
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	229
BsaJI	CCNNGG	5 cut(s)	12, 678, 834, 858, 1064
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 1065
Bse1I	ACTGG	2 cut(s)	325, 532
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	119, 498
BseDI	CCNNGG	5 cut(s)	12, 678, 834, 858, 1064
BseGI	GGATG	3 cut(s)	388, 632, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	481, 1065
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	165, 447
BseNI	ACTGG	2 cut(s)	325, 532
BseRI	GAGGAG	2 cut(s)	351, 813
BseSI	GKGCMC	1 cut(s)	1218
BseXI	GCAGC	3 cut(s)	47, 533, 758
BshFI	GGCC	2 cut(s)	465, 863
BshNI	GGYRCC	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	2 cut(s)	481, 1065
BsmAI	GTCTC	1 cut(s)	1106
BsmBI	CGTCTC	1 cut(s)	1106
BsmFI	GGGAC	1 cut(s)	1322
BsnI	GGCC	2 cut(s)	465, 863
Bsp1286I	GDGCHC	3 cut(s)	1022, 1218, 1324
Bsp143I	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
Bsp19I	CCATGG	2 cut(s)	858, 1064
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	465, 863
BspCNI	CTCAG	2 cut(s)	166, 448
BspLI	GGNNCC	3 cut(s)	253, 763, 985
BspMAI	CTGCAG	2 cut(s)	265, 523
BspMI	ACCTGC	2 cut(s)	673, 816
BspPI	GGATC	3 cut(s)	25, 421, 927
BspQI	GCTCTTC	1 cut(s)	1056
BspT107I	GGYRCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	325, 532
BssECI	CCNNGG	5 cut(s)	12, 678, 834, 858, 1064
BssMI	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
BssNI	GRCGYC	1 cut(s)	229
BssSI	CACGAG	2 cut(s)	1110, 1323
BssT1I	CCWWGG	4 cut(s)	678, 834, 858, 1064
Bst2BI	CACGAG	2 cut(s)	1110, 1323
Bst2UI	CCWGG	2 cut(s)	119, 498
Bst4CI	ACNGT	2 cut(s)	754, 793
Bst6I	CTCTTC	2 cut(s)	1056, 1293
BstACI	GRCGYC	1 cut(s)	229
BstAFI	CTTAAG	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	40, 1035
BstDEI	CTNAG	5 cut(s)	174, 300, 309, 372, 456
BstDSI	CCRYGG	3 cut(s)	12, 858, 1064
BstEII	GGTNACC	1 cut(s)	429
BstF5I	GGATG	3 cut(s)	388, 632, 1054
BstHHI	GCGC	1 cut(s)	1151
BstKTI	GATC	6 cut(s)	20, 416, 545, 581, 922, 1145
BstMAI	GTCTC	1 cut(s)	1106
BstMBI	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	119, 498
BstNSI	RCATGY	3 cut(s)	248, 577, 981
BstPI	GGTNACC	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	117, 496
BstSFI	CTRYAG	2 cut(s)	261, 519
BstSLI	GKGCMC	1 cut(s)	1218
BstV1I	GCAGC	3 cut(s)	47, 533, 758
BstX2I	RGATCY	2 cut(s)	542, 1142
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	2 cut(s)	542, 1142
BsuRI	GGCC	2 cut(s)	465, 863
BtgI	CCRYGG	3 cut(s)	12, 858, 1064
BtgZI	GCGATG	2 cut(s)	75, 420
BtsCI	GGATG	3 cut(s)	388, 632, 1054
BtsIMutI	CAGTG	2 cut(s)	567, 759
BveI	ACCTGC	2 cut(s)	673, 816
Cac8I	GCNNGC	2 cut(s)	40, 1035
CfoI	GCGC	1 cut(s)	1151
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	1 cut(s)	218
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	5 cut(s)	494, 564, 721, 843, 1241
CviAII	CATG	9 cut(s)	245, 281, 561, 574, 596, 697, 859, 978, 1065
CviQI	GTAC	5 cut(s)	494, 564, 721, 843, 1241
DdeI	CTNAG	5 cut(s)	174, 300, 309, 372, 456
DpnI	GATC	6 cut(s)	19, 415, 544, 580, 921, 1144
DpnII	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
DraIII	CACNNNGTG	1 cut(s)	947
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	2 cut(s)	1056, 1293
EarI	CTCTTC	2 cut(s)	1056, 1293
Eco130I	CCWWGG	4 cut(s)	678, 834, 858, 1064
Eco24I	GRGCYC	2 cut(s)	1022, 1324
Eco32I	GATATC	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	2 cut(s)	756, 1317
Eco91I	GGTNACC	1 cut(s)	429
EcoO65I	GGTNACC	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	117, 496
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	4 cut(s)	678, 834, 858, 1064
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	2 cut(s)	1022, 1324
ErhI	CCWWGG	4 cut(s)	678, 834, 858, 1064
Esp3I	CGTCTC	1 cut(s)	1106
FaeI	CATG	9 cut(s)	248, 284, 564, 577, 599, 700, 862, 981, 1068
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	9 cut(s)	244, 280, 560, 573, 595, 696, 858, 977, 1064
Fnu4HI	GCNGC	3 cut(s)	36, 522, 747
FokI	GGATG	3 cut(s)	375, 619, 1041
FriOI	GRGCYC	2 cut(s)	1022, 1324
Fsp4HI	GCNGC	3 cut(s)	36, 522, 747
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	1 cut(s)	1150
GluI	GCNGC	3 cut(s)	36, 522, 747
HaeIII	GGCC	2 cut(s)	465, 863
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	1151
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	9 cut(s)	248, 284, 564, 577, 599, 700, 862, 981, 1068
Hin6I	GCGC	1 cut(s)	1149
HinP1I	GCGC	1 cut(s)	1149
HincII	GTYRAC	2 cut(s)	318, 905
HindII	GTYRAC	2 cut(s)	318, 905
HindIII	AAGCTT	2 cut(s)	201, 776
HinfI	GANTC	6 cut(s)	314, 470, 653, 671, 707, 1184
HphI	GGTGA	5 cut(s)	91, 341, 408, 423, 1297
Hpy166II	GTNNAC	4 cut(s)	318, 404, 723, 905
Hpy188I	TCNGA	7 cut(s)	189, 270, 505, 805, 928, 1003, 1297
Hpy188III	TCNNGA	3 cut(s)	133, 546, 827
Hpy8I	GTNNAC	4 cut(s)	318, 404, 723, 905
HpyAV	CCTTC	6 cut(s)	326, 561, 731, 780, 1129, 1225
HpyCH4III	ACNGT	2 cut(s)	754, 793
HpyCH4IV	ACGT	2 cut(s)	400, 1099
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	5 cut(s)	174, 300, 309, 372, 456
HpySE526I	ACGT	2 cut(s)	400, 1099
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	9 cut(s)	248, 284, 564, 577, 599, 700, 862, 981, 1068
HspAI	GCGC	1 cut(s)	1149
Kzo9I	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
LguI	GCTCTTC	1 cut(s)	1056
Lsp1109I	GCAGC	3 cut(s)	47, 533, 758
LweI	GCATC	4 cut(s)	52, 397, 733, 1036
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	2 cut(s)	400, 1099
MaeIII	GTNAC	3 cut(s)	79, 429, 939
MalI	GATC	6 cut(s)	19, 415, 544, 580, 921, 1144
MboI	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
MboII	GAAGA	8 cut(s)	93, 191, 251, 286, 653, 1043, 1208, 1310
MfeI	CAATTG	5 cut(s)	43, 348, 990, 1124, 1179
MflI	RGATCY	2 cut(s)	542, 1142
MhlI	GDGCHC	3 cut(s)	1022, 1218, 1324
MlsI	TGGCCA	1 cut(s)	863
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	2 cut(s)	323, 665
MmeI	TCCRAC	2 cut(s)	651, 981
Mox20I	TGGCCA	1 cut(s)	863
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	3 cut(s)	126, 774, 1074
MslI	CAYNNNNRTG	3 cut(s)	572, 913, 1011
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	119, 498
MunI	CAATTG	5 cut(s)	43, 348, 990, 1124, 1179
MvaI	CCWGG	2 cut(s)	119, 498
MwoI	GCNNNNNNNGC	1 cut(s)	32
NcoI	CCATGG	2 cut(s)	858, 1064
NdeII	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
NlaIII	CATG	9 cut(s)	248, 284, 564, 577, 599, 700, 862, 981, 1068
NlaIV	GGNNCC	3 cut(s)	253, 763, 985
NmuCI	GTSAC	3 cut(s)	79, 429, 939
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	3 cut(s)	248, 577, 981
PaqCI	CACCTGC	1 cut(s)	673
PciI	ACATGT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	1056
PfeI	GAWTC	4 cut(s)	470, 653, 707, 1184
PkrI	GCNGC	3 cut(s)	37, 523, 748
PleI	GAGTC	2 cut(s)	322, 665
PpsI	GAGTC	2 cut(s)	322, 665
Ppu21I	YACGTR	1 cut(s)	401
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	117, 496
PspEI	GGTNACC	1 cut(s)	429
PspGI	CCWGG	2 cut(s)	117, 496
PspN4I	GGNNCC	3 cut(s)	253, 763, 985
PspPI	GGNCC	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	265, 523
PsuI	RGATCY	2 cut(s)	542, 1142
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	5 cut(s)	495, 565, 722, 844, 1242
RsaNI	GTAC	5 cut(s)	494, 564, 721, 843, 1241
RseI	CAYNNNNRTG	3 cut(s)	572, 913, 1011
SapI	GCTCTTC	1 cut(s)	1056
SaqAI	TTAA	3 cut(s)	126, 774, 1074
SatI	GCNGC	3 cut(s)	36, 522, 747
Sau3AI	GATC	6 cut(s)	17, 413, 542, 578, 919, 1142
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	2 cut(s)	323, 665
ScrFI	CCNGG	2 cut(s)	119, 498
SduI	GDGCHC	3 cut(s)	1022, 1218, 1324
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	4 cut(s)	52, 397, 733, 1036
SfcI	CTRYAG	2 cut(s)	261, 519
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	3 cut(s)	572, 913, 1011
SmlI	CTYRAG	2 cut(s)	89, 125
SmoI	CTYRAG	2 cut(s)	89, 125
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	2 cut(s)	117, 496
StyI	CCWWGG	4 cut(s)	678, 834, 858, 1064
TaaI	ACNGT	2 cut(s)	754, 793
TaiI	ACGT	2 cut(s)	403, 1102
TaqI	TCGA	2 cut(s)	547, 851
TatI	WGTACW	2 cut(s)	720, 842
TfiI	GAWTC	4 cut(s)	470, 653, 707, 1184
Tru1I	TTAA	3 cut(s)	126, 774, 1074
Tru9I	TTAA	3 cut(s)	126, 774, 1074
TscAI	CASTG	2 cut(s)	574, 759
TseFI	GTSAC	3 cut(s)	79, 429, 939
TseI	GCWGC	3 cut(s)	35, 521, 746
Tsp45I	GTSAC	3 cut(s)	79, 429, 939
TspDTI	ATGAA	6 cut(s)	93, 549, 713, 720, 1043, 1134
TspRI	CASTG	2 cut(s)	574, 759
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	442, 967
XceI	RCATGY	3 cut(s)	248, 577, 981
XspI	CTAG	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.