FvH4_5g18100
MYB Family

transcription, DNA-templated

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
10412880 .. 10415859
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18100.t1

Sequence Viewer

Length: 1089 bp
ATGGCTTTTCTAGAGGATCAGAGTGAAGCCACGGGATCAAACGCCTCTCTTGCGGTTGGCAATTGCAGCCCAAAAGGGGATGCTCAATCGAAATTGGTGACTGAACTCCAGGACTTTTCGTCATTTGGCAATGATCAGGCACTTAAGGTCAGGAAACCTTACACCATTACAAAACAAAGAGAAAAATGGACGGAGGAAGAACACCAAAAGTTTCTTGAAGCCTTGAAATTGTATGGCCGAGGTTGGCGTCAAATAGAAGAACATGTAGGAACCAAAACTGCAGTTCAGATACGAAGTCATGCTCAGAAGTTCTTCTCTAAGGTAGCTAAGGAGTTGCCTGGAACTGGTGAAGGCTCCCTCAAACCAATTGAAATACCTCCTCCGCGACCTAAGCGGAAGCCTATGCATCCTTATCCACGTAAACATAATGGATCACCAGAAAGGAGGTCACCGTCCCCAAATTTTTCAGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATATAATCGGGTCTCCAGCTTTGGAGCAATATAACAGATCTCGACCTTCAACATCATGTACCACTGACATGCGATCAGCCAACTTATCCCATGTTGAAAAGGAGAATGACTATGCGACATCCAGCCCATCCACTGAAGAAGCAAAAGAAACTATGCCACATGTGGACTCAACCTTGGACAAACCTCTTTCTGTGGTCCAGAAAGATGCATCGGCTTCCGGGTGCACTTCAACTACTGAAGGAGATGCAGGCAGAGTGGGAGCTTCCATGAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCCGACCTGCATAAACAATCTTCTTCTGGTACCAAGGATTGTACTTCGTCGATATACATGGCCAAACAAGAGAATCATGAGAGTGAGAGTGGGTGGGACAACAAGACGGGAGCCCCAAGTCTGTGCCAGCCAACTCGGATGCTCCTCCTCCCTTGCCTTGGTGGGTTAGTCTACCATTTTGTCAGGTTGTATGCGTCGATTCCCGTGTTGATGAACTATCGAAGCAGAATGAAAGATCTTGCGCTGGTTCAAATGATGGTTTAG

Protein Analysis

363

Amino Acids

39.78

Weight (kDa)

8.74

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 60 - 103 6.9e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 840
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 996
AccII CGCG 1 cut(s) 385
AciI CCGC 3 cut(s) 53, 383, 394
AclWI GGATC 3 cut(s) 24, 43, 439
AcoI YGGCCR 2 cut(s) 235, 885
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 3 cut(s) 483, 678, 780
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 4 cut(s) 513, 583, 856, 868
AfiI CCNNNNNNNGG 3 cut(s) 76, 344, 983
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 262, 682
AgsI TTSAA 7 cut(s) 218, 226, 371, 573, 620, 753, 1076
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 3 cut(s) 108, 337, 514
AluBI AGCT 4 cut(s) 326, 542, 785, 802
AluI AGCT 4 cut(s) 326, 542, 785, 802
Alw21I GWGCWC 1 cut(s) 749
Alw26I GTCTC 1 cut(s) 540
Alw44I GTGCAC 1 cut(s) 745
AlwI GGATC 3 cut(s) 24, 43, 439
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 3 cut(s) 235, 481, 885
ApaLI GTGCAC 1 cut(s) 745
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 4 cut(s) 109, 359, 426, 441
AvaII GGWCC 1 cut(s) 718
BaeGI GKGCMC 1 cut(s) 749
BalI TGGCCA 1 cut(s) 887
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 749
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 658, 1075
BciT130I CCWGG 3 cut(s) 110, 339, 516
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 840
BglII AGATCT 2 cut(s) 560, 1060
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 4 cut(s) 110, 339, 516, 742
Bme18I GGWCC 1 cut(s) 718
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 4 cut(s) 271, 355, 856, 937
BmrFI CCNGG 4 cut(s) 110, 339, 516, 742
BmsI GCATC 6 cut(s) 70, 415, 718, 740, 757, 954
BpmI CTGGAG 2 cut(s) 92, 522
Bpu10I CCTNAGC 2 cut(s) 327, 390
BpuMI CCSGG 1 cut(s) 742
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 5 cut(s) 30, 238, 696, 858, 982
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 344, 983
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 3 cut(s) 110, 339, 516
BseDI CCNNGG 5 cut(s) 30, 238, 696, 858, 982
BseGI GGATG 5 cut(s) 85, 406, 641, 650, 969
BseLI CCNNNNNNNGG 3 cut(s) 76, 344, 983
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 317, 465
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 3 cut(s) 369, 959, 962
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 237, 483, 887
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 749
BsiSI CCGG 1 cut(s) 741
BslFI GGGAC 2 cut(s) 439, 935
BslI CCNNNNNNNGG 3 cut(s) 76, 344, 983
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 2 cut(s) 439, 935
BsnI GGCC 3 cut(s) 237, 483, 887
Bso31I GGTCTC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 749, 940
Bsp143I GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
BspACI CCGC 3 cut(s) 53, 383, 394
BspANI GGCC 3 cut(s) 237, 483, 887
BspCNI CTCAG 2 cut(s) 316, 466
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 4 cut(s) 271, 355, 856, 937
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 840
BspPI GGATC 3 cut(s) 24, 43, 439
BspT107I GGYRCC 1 cut(s) 854
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 5 cut(s) 30, 238, 696, 858, 982
BssMI GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 3 cut(s) 696, 858, 982
Bst2UI CCWGG 3 cut(s) 110, 339, 516
Bst4CI ACNGT 2 cut(s) 453, 817
BstACI GRCGYC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 772, 953
BstDEI CTNAG 5 cut(s) 303, 318, 327, 390, 474
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 447
BstF5I GGATG 5 cut(s) 85, 406, 641, 650, 969
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 7 cut(s) 19, 38, 136, 434, 563, 599, 1063
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
BstMWI GCNNNNNNNGC 3 cut(s) 50, 66, 391
BstNI CCWGG 3 cut(s) 110, 339, 516
BstNSI RCATGY 3 cut(s) 266, 595, 686
BstPI GGTNACC 1 cut(s) 447
BstSCI CCNGG 4 cut(s) 108, 337, 514, 740
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 749
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 560, 1060
BstYI RGATCY 2 cut(s) 560, 1060
BsuRI GGCC 3 cut(s) 237, 483, 887
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 5 cut(s) 85, 406, 641, 650, 969
BtsIMutI CAGTG 2 cut(s) 585, 654
BveI ACCTGC 1 cut(s) 840
Cac8I GCNNGC 2 cut(s) 772, 953
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 1 cut(s) 718
CseI GACGC 2 cut(s) 236, 1008
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 4 cut(s) 512, 582, 855, 867
CviAII CATG 9 cut(s) 263, 299, 579, 592, 614, 683, 790, 883, 902
CviQI GTAC 4 cut(s) 512, 582, 855, 867
DdeI CTNAG 5 cut(s) 303, 318, 327, 390, 474
DpnI GATC 7 cut(s) 18, 37, 135, 433, 562, 598, 1062
DpnII GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 235, 885
Eam1105I GACNNNNNGTC 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 696, 858, 982
Eco24I GRGCYC 1 cut(s) 940
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 718
Eco57I CTGAAG 3 cut(s) 483, 678, 780
Eco91I GGTNACC 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 447
EcoRII CCWGG 3 cut(s) 108, 337, 514
EcoT14I CCWWGG 3 cut(s) 696, 858, 982
EcoT22I ATGCAT 2 cut(s) 408, 733
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 3 cut(s) 696, 858, 982
FaeI CATG 9 cut(s) 266, 302, 582, 595, 617, 686, 793, 886, 905
FaqI GGGAC 2 cut(s) 439, 935
FatI CATG 9 cut(s) 262, 298, 578, 591, 613, 682, 789, 882, 901
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 5 cut(s) 92, 393, 628, 637, 976
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 92, 522
HaeIII GGCC 3 cut(s) 237, 483, 887
HapII CCGG 1 cut(s) 741
HgaI GACGC 2 cut(s) 236, 1008
HhaI GCGC 1 cut(s) 1069
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 9 cut(s) 266, 302, 582, 595, 617, 686, 793, 886, 905
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 4 cut(s) 488, 689, 898, 1024
HpaII CCGG 1 cut(s) 741
HphI GGTGA 4 cut(s) 109, 359, 426, 441
Hpy166II GTNNAC 4 cut(s) 422, 688, 747, 997
Hpy188I TCNGA 6 cut(s) 21, 288, 306, 523, 829, 963
Hpy188III TCNNGA 6 cut(s) 11, 151, 215, 564, 721, 902
Hpy8I GTNNAC 4 cut(s) 422, 688, 747, 997
Hpy99I CGWCG 2 cut(s) 877, 1024
HpyAV CCTTC 4 cut(s) 344, 579, 755, 804
HpyCH4III ACNGT 2 cut(s) 453, 817
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 7 cut(s) 66, 281, 406, 731, 747, 770, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 66, 391
HpyF3I CTNAG 5 cut(s) 303, 318, 327, 390, 474
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 9 cut(s) 266, 302, 582, 595, 617, 686, 793, 886, 905
HspAI GCGC 1 cut(s) 1067
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
LmnI GCTCC 5 cut(s) 359, 547, 782, 935, 972
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 6 cut(s) 70, 415, 718, 740, 757, 954
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 97, 447
MalI GATC 7 cut(s) 18, 37, 135, 433, 562, 598, 1062
MboI GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
MboII GAAGA 6 cut(s) 209, 269, 304, 671, 837, 840
MfeI CAATTG 2 cut(s) 61, 366
MflI RGATCY 2 cut(s) 560, 1060
MhlI GDGCHC 2 cut(s) 749, 940
MlsI TGGCCA 1 cut(s) 887
MluCI AATT 5 cut(s) 61, 92, 227, 366, 460
MluNI TGGCCA 1 cut(s) 887
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 1 cut(s) 852
Mox20I TGGCCA 1 cut(s) 887
Mph1103I ATGCAT 2 cut(s) 408, 733
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 1 cut(s) 887
MseI TTAA 2 cut(s) 144, 798
MslI CAYNNNNRTG 2 cut(s) 590, 906
Msp20I TGGCCA 1 cut(s) 887
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 741
MspR9I CCNGG 4 cut(s) 110, 339, 516, 742
MunI CAATTG 2 cut(s) 61, 366
MvaI CCWGG 3 cut(s) 110, 339, 516
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 3 cut(s) 50, 66, 391
NciI CCSGG 1 cut(s) 742
NdeII GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
NlaIII CATG 9 cut(s) 266, 302, 582, 595, 617, 686, 793, 886, 905
NlaIV GGNNCC 4 cut(s) 271, 355, 856, 937
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 97, 447
NsiI ATGCAT 2 cut(s) 408, 733
NspI RCATGY 3 cut(s) 266, 595, 686
PagI TCATGA 1 cut(s) 901
PciI ACATGT 2 cut(s) 262, 682
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 488, 898, 1024
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 683
PpsI GAGTC 1 cut(s) 683
Ppu21I YACGTR 1 cut(s) 419
PscI ACATGT 2 cut(s) 262, 682
Psp6I CCWGG 3 cut(s) 108, 337, 514
PspEI GGTNACC 1 cut(s) 447
PspGI CCWGG 3 cut(s) 108, 337, 514
PspN4I GGNNCC 4 cut(s) 271, 355, 856, 937
PspPI GGNCC 1 cut(s) 718
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 2 cut(s) 560, 1060
RsaI GTAC 4 cut(s) 513, 583, 856, 868
RsaNI GTAC 4 cut(s) 512, 582, 855, 867
RseI CAYNNNNRTG 2 cut(s) 590, 906
SaqAI TTAA 2 cut(s) 144, 798
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 7 cut(s) 16, 35, 133, 431, 560, 596, 1060
Sau96I GGNCC 1 cut(s) 718
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 4 cut(s) 110, 339, 516, 742
SduI GDGCHC 2 cut(s) 749, 940
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 6 cut(s) 70, 415, 718, 740, 757, 954
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 590, 906
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 61, 92, 227, 366, 460
SsiI CCGC 3 cut(s) 53, 383, 394
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 4 cut(s) 108, 337, 514, 740
StyI CCWWGG 3 cut(s) 696, 858, 982
TaaI ACNGT 2 cut(s) 453, 817
TaiI ACGT 1 cut(s) 421
TaqI TCGA 5 cut(s) 89, 565, 875, 1022, 1045
TasI AATT 5 cut(s) 61, 92, 227, 366, 460
TatI WGTACW 1 cut(s) 866
TfiI GAWTC 3 cut(s) 488, 898, 1024
Tru1I TTAA 2 cut(s) 144, 798
Tru9I TTAA 2 cut(s) 144, 798
TscAI CASTG 2 cut(s) 592, 661
TseFI GTSAC 2 cut(s) 97, 447
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 2 cut(s) 97, 447
TspDTI ATGAA 2 cut(s) 1052, 1070
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 592, 661
Vha464I CTTAAG 1 cut(s) 143
VneI GTGCAC 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 718
XapI RAATTY 1 cut(s) 460
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 3 cut(s) 266, 595, 686
XmiI GTMKAC 1 cut(s) 996
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 2 cut(s) 408, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.