Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Reverse (-)

14751344 .. 14753088

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTATGCAGGAACGTTGTGAGAGTTTATGTTCTGATGAACTTATATCTTCCTCAGATGCCTTTTACCTCAAGACAAGAAAGCCTTATACCATCACTAAACAAAGAGAGAAATGGACAGAAGCAGAGCATGAGAAGTTTGTAGAAGCATTGAAACTCTATGGCAGAGCTTGGAGACGAATCGAAGAACATGTTGGAACAAAAACTGCAGTTCAGATTCGAAGCCATGCGCAGAAGTTCTTTACTAAGGTTGCTCGCGATTTTGGTGTTAGCTCTGAGTCCATTGAGATCCCGCCTCCAAGGCCAAAGAGAAAGCCGATGCATCCTTACCCTAGAAAGCTTGTGATTCCTGATGCAAAAGAGATGGTATACGCTGAACTAACCGGATCCAAGCTGATTCAGGATGAAGATAACCGATCTCCAACATCGGTTTTATCAGCTCATGGCTCAGATGGATTAGGTTCCATTGGTTCAAATTCACCTAACTCTTCTTCAGCTGAGTTATCATCTCACACAGAGGAATCATTGTCTCTAGAAGCAGAGACCAAACAGAGCCTTAAGCTCTTTGGAAAAACTTTTGTAGTTGGTGATTACAACTCTTCAATGAGTTGTGATGATTCTGAAGATGGCAAGAAGAAGCTATACTCAGAAACACAGTCTCTTCAATGTTCTTCTTCTACTTCAGAAAACGCTGAAACAGAAGTGGTAGTGTCGGAGTTCAAAAGAAGTGAGAGATCAGCTTTCTCTCAGTTAAAATCGTCGGTGACTGAGATGAACAACATGAGAGGGTTCATGCCTTACAAAAAGAGAGTAAAGGTGGAAGAAAACATTGACAATGTAAAATTATCATATCCTTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.44

Weight (kDa)

7.02

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 79	9.7e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	16
AclWI	GGATC	3 cut(s)	283, 381, 394
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	3 cut(s)	477, 642, 666
AflII	CTTAAG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	154, 474, 603, 665, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	9 cut(s)	170, 273, 340, 394, 440, 497, 562, 640, 740
AluI	AGCT	9 cut(s)	170, 273, 340, 394, 440, 497, 562, 640, 740
Alw26I	GTCTC	4 cut(s)	169, 534, 536, 663
AlwI	GGATC	3 cut(s)	283, 381, 394
AoxI	GGCC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	471, 599, 775
AsuII	TTCGAA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	386
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BccI	CCATC	4 cut(s)	101, 358, 446, 620
BcoDI	GTCTC	4 cut(s)	169, 534, 536, 663
BfaI	CTAG	2 cut(s)	333, 533
BfmI	CTRYAG	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	388, 463
BmsI	GCATC	4 cut(s)	49, 309, 331, 343
Bpu14I	TTCGAA	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	322, 409
BseMII	CTCAG	7 cut(s)	69, 267, 462, 489, 660, 759, 761
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	384
BsmAI	GTCTC	4 cut(s)	169, 534, 536, 663
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	288, 386, 416, 734
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	7 cut(s)	68, 268, 461, 490, 659, 760, 760
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	388, 463
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	283, 381, 394
BspT104I	TTCGAA	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	288, 386, 416, 734
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	299
Bst1107I	GTATAC	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	3 cut(s)	493, 604, 666
BstAFI	CTTAAG	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	8 cut(s)	55, 246, 276, 448, 498, 646, 747, 768
BstF5I	GGATG	2 cut(s)	322, 409
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	291, 389, 419, 737
BstMAI	GTCTC	4 cut(s)	169, 534, 536, 663
BstMBI	GATC	4 cut(s)	288, 386, 416, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	288, 386
BstYI	RGATCY	2 cut(s)	288, 386
BstZ17I	GTATAC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	322, 409
BtuMI	TCGCGA	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	232
CviAII	CATG	6 cut(s)	131, 191, 227, 443, 781, 793
DdeI	CTNAG	8 cut(s)	55, 246, 276, 448, 498, 646, 747, 768
DpnI	GATC	4 cut(s)	290, 388, 418, 736
DpnII	GATC	4 cut(s)	288, 386, 416, 734
Eam1104I	CTCTTC	3 cut(s)	493, 604, 666
EarI	CTCTTC	3 cut(s)	493, 604, 666
Eco130I	CCWWGG	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	536
Eco57I	CTGAAG	3 cut(s)	477, 642, 666
EcoT14I	CCWWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	6 cut(s)	134, 194, 230, 446, 784, 796
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	6 cut(s)	130, 190, 226, 442, 780, 792
FauI	CCCGC	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	2 cut(s)	309, 416
FspBI	CTAG	2 cut(s)	333, 533
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	6 cut(s)	134, 194, 230, 446, 784, 796
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	7 cut(s)	180, 217, 278, 346, 397, 521, 617
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	3 cut(s)	471, 599, 775
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	9 cut(s)	37, 58, 216, 277, 451, 622, 649, 685, 715
Hpy188III	TCNNGA	5 cut(s)	73, 257, 350, 401, 533
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	763
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	10, 209, 322, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	8 cut(s)	55, 246, 276, 448, 498, 646, 747, 768
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	6 cut(s)	134, 194, 230, 446, 784, 796
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	4 cut(s)	288, 386, 416, 734
LpnPI	CCDG	3 cut(s)	363, 386, 397
LweI	GCATC	4 cut(s)	49, 309, 331, 343
MaeI	CTAG	2 cut(s)	333, 533
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	4 cut(s)	290, 388, 418, 736
MboI	GATC	4 cut(s)	288, 386, 416, 734
MflI	RGATCY	2 cut(s)	288, 386
MluCI	AATT	2 cut(s)	475, 842
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	3 cut(s)	175, 446, 693
MnlI	CCTC	5 cut(s)	64, 80, 306, 511, 779
Mph1103I	ATGCAT	1 cut(s)	324
MseI	TTAA	2 cut(s)	558, 752
MspA1I	CMGCKG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	4 cut(s)	288, 386, 416, 734
NlaIII	CATG	6 cut(s)	134, 194, 230, 446, 784, 796
NlaIV	GGNNCC	2 cut(s)	388, 463
NmuCI	GTSAC	1 cut(s)	763
NruI	TCGCGA	1 cut(s)	258
NsbI	TGCGCA	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	324
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	190
PfeI	GAWTC	6 cut(s)	180, 217, 346, 397, 521, 617
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PscI	ACATGT	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	388, 463
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	288, 386
PvuII	CAGCTG	1 cut(s)	497
RruI	TCGCGA	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	558, 752
Sau3AI	GATC	4 cut(s)	288, 386, 416, 734
SchI	GAGTC	1 cut(s)	287
SfaNI	GCATC	4 cut(s)	49, 309, 331, 343
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	71, 557
SmoI	CTYRAG	2 cut(s)	71, 557
Sse9I	AATT	2 cut(s)	475, 842
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	333, 533
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	183, 220
TasI	AATT	2 cut(s)	475, 842
TfiI	GAWTC	6 cut(s)	180, 217, 346, 397, 521, 617
Tru1I	TTAA	2 cut(s)	558, 752
Tru9I	TTAA	2 cut(s)	558, 752
TseFI	GTSAC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	54, 420, 781, 788
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	333, 533
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.