Prupe.5G241000_v2.0.a1
MYB Family

transcription, DNA-templated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
18156285 .. 18162524
6240 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G241000.1

Sequence Viewer

Length: 1365 bp
ATGGCTGTTGAGGATTACAGTGAAGCCACAGGGTCAAACGCCTCTGTTGCAGCTGCTGATTGCAGTCTAAAAGGCGATGCACAATCTAAACCAGTGATTGAACTCAAGGAGTTATCTTCCTTTGGCAATGACCATACGCCTAAGATCAGGAAACCTTACACAATTACAAAACAAAGAGAAAAATGGACAGAGGAAGAGCATCACAAGTTCCTTGAAGCCTTGAAATTGTATGGCCGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAAACTGCAGTTCAGATTCGAAGTCATGCTCAAAAGTTCTTCTCTAAGGTATCTAAGGAGTCGAGCGGACCTAGCGAAGGCTCCATCACACCAATTGAGATACCACCTCCACGGCCTAAGCGGAAGCCTGTGCATCCTTATCCACGTAAATCAGTCGATTCTCTCATCGGATCACCAGAAAGGTCACCGTCCCCGCATTTTTCAGTTTCTGGGAAAGGCCAAGAATCGCCTACTTCAGTATTATCTGCACTTGGTTCAGATGTACTGGGGTCTGCAGCTTTGGACCAGCCTAGCAGATCTGCAACCCCAACTTCATGTACCACTGACATGCGCTCAACCATCTTATCCCATGTTGAAAAAGAGAATGATTACATGACATCCAACTCATCCACTGAAGAAGTGAAAGAGTCCGTGCCATCAGTTCAATTATCTGCTGACTCGACTCCGGAAAAATTTGCGTGCATGAAACATGGATCAGGTTCCAATCACATTGTGAGTACAGAAGGAGATGCTGGCAGTCCAAGAGCTTCCTCAAGTATTAAGCTGTTTGGAAGGACAGTTTTGGTATCAGACTCGGAGAGACAATCTCCACCTGGTAGTGTTACCAAGGATTCAAAGGCTAAACAAGAGAATTGTCAGAGGGAAAATGATAAGCTTGCTCAAACATTAAGATTGGATGAGTTAGACACGCGTTTGTCACTCGGTGGAATTGGGGAACACCAAAAACAGAGCCCTAATTCTCAGAAAGTTAACCCTGATGCTCCTCCGCCATGGTGGTTTATGCATAATGGTTTAATACCATTTTTTCAAGTCAGATCATGTAACCAAAACTCAGTTCAAATACACGCCAATTCATGTGCGGATGAAACAATGAAAGAGATGGAAACGTCTTTATCACACGATGGTTCAGTTAGTGCAGTGGAAATTTTAGCAGAGAAGCATTTAGAGGCTGCTGATGCGTTACGCGAAGAGACTCGATCTCTCCCTTGCAGTTCAAGAAAGGGGTTTGCACCATACAAAAGATGCTTAGCAGATAGAAATATGAACTCATCAGGAGAGATGAGGGACAGACAGCGGGCTCGTGTCTGCTCATAG

Protein Analysis

455

Amino Acids

49.73

Weight (kDa)

7.24

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 2 cut(s) 961, 1236
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 6 cut(s) 336, 391, 464, 1037, 1130, 1345
AclWI GGATC 2 cut(s) 448, 751
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 2 cut(s) 722, 1194
AcuI CTGAAG 2 cut(s) 489, 684
AcyI GRCGYC 1 cut(s) 244
AdeI CACNNNGTG 2 cut(s) 763, 974
AfaI GTAC 3 cut(s) 534, 589, 769
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 2 cut(s) 259, 959
AgsI TTSAA 9 cut(s) 101, 215, 223, 626, 695, 885, 1079, 1109, 1266
AjnI CCWGG 1 cut(s) 862
AjuI GAANNNNNNNTTGG 2 cut(s) 1089, 1121
AluBI AGCT 5 cut(s) 53, 548, 797, 814, 925
AluI AGCT 5 cut(s) 53, 548, 797, 814, 925
Alw26I GTCTC 2 cut(s) 844, 1235
AlwI GGATC 2 cut(s) 448, 751
AlwNI CAGNNNCTG 2 cut(s) 56, 479
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 3 cut(s) 232, 383, 487
ApeKI GCWGC 4 cut(s) 50, 53, 545, 1220
ApoI RAATTY 2 cut(s) 722, 1194
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 2 cut(s) 338, 553
AsuHPI GGTGA 2 cut(s) 435, 447
AsuII TTCGAA 1 cut(s) 289
AvaII GGWCC 2 cut(s) 338, 553
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 1004, 1351
BauI CACGAG 1 cut(s) 1350
BbvI GCAGC 4 cut(s) 40, 62, 557, 1207
BccI CCATC 5 cut(s) 362, 617, 694, 1144, 1166
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 864
BcoDI GTCTC 2 cut(s) 844, 1235
BfaI CTAG 2 cut(s) 342, 561
BfmI CTRYAG 2 cut(s) 276, 543
BglII AGATCT 1 cut(s) 566
BisI GCNGC 4 cut(s) 51, 54, 546, 1221
BlpI GCTNAGC 1 cut(s) 1297
BlsI GCNGC 4 cut(s) 52, 55, 547, 1222
Bme1390I CCNGG 1 cut(s) 864
Bme18I GGWCC 2 cut(s) 338, 553
BmgT120I GGNCC 2 cut(s) 338, 553
BmiI GGNNCC 3 cut(s) 268, 352, 751
BmrFI CCNGG 1 cut(s) 864
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 7 cut(s) 67, 208, 412, 769, 1018, 1216, 1283
BmuI ACTGGG 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 841, 873
Bpu10I CCTNAGC 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 1297
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 2 cut(s) 89, 787
BsaAI YACGTR 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 4 cut(s) 235, 380, 876, 1040
BsaWI WCCGGW 1 cut(s) 715
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 92, 540
Bse3DI GCAATG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 4 cut(s) 235, 380, 876, 1040
BseGI GGATG 5 cut(s) 403, 647, 656, 952, 1138
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 1025, 1116
BseNI ACTGG 2 cut(s) 92, 540
BseRI GAGGAG 1 cut(s) 1023
BseXI GCAGC 4 cut(s) 40, 62, 557, 1207
BsgI GTGCAG 2 cut(s) 501, 1206
Bsh1236I CGCG 2 cut(s) 961, 1236
BshFI GGCC 3 cut(s) 234, 385, 489
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 716
BslFI GGGAC 2 cut(s) 445, 1349
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 844, 1235
BsmFI GGGAC 2 cut(s) 445, 1349
BsnI GGCC 3 cut(s) 234, 385, 489
Bsp119I TTCGAA 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 1004, 1351
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
Bsp1720I GCTNAGC 1 cut(s) 1297
Bsp19I CCATGG 1 cut(s) 1040
BspACI CCGC 6 cut(s) 336, 391, 464, 1037, 1130, 1345
BspANI GGCC 3 cut(s) 234, 385, 489
BspCNI CTCAG 2 cut(s) 1024, 1115
BspEI TCCGGA 1 cut(s) 715
BspFNI CGCG 2 cut(s) 961, 1236
BspLI GGNNCC 3 cut(s) 268, 352, 751
BspMAI CTGCAG 2 cut(s) 280, 547
BspPI GGATC 2 cut(s) 448, 751
BspQI GCTCTTC 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 2 cut(s) 92, 540
BssECI CCNNGG 4 cut(s) 235, 380, 876, 1040
BssMI GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
BssNI GRCGYC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 1350
BssT1I CCWWGG 2 cut(s) 876, 1040
Bst2BI CACGAG 1 cut(s) 1350
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 3 cut(s) 20, 459, 829
Bst6I CTCTTC 2 cut(s) 189, 1233
BstACI GRCGYC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 416
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 4 cut(s) 730, 784, 927, 1347
BstDEI CTNAG 7 cut(s) 141, 315, 324, 387, 1011, 1102, 1297
BstDSI CCRYGG 2 cut(s) 380, 1040
BstEII GGTNACC 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 5 cut(s) 403, 647, 656, 952, 1138
BstFNI CGCG 2 cut(s) 961, 1236
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 6 cut(s) 147, 443, 569, 746, 1088, 1250
BstMAI GTCTC 2 cut(s) 844, 1235
BstMBI GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
BstMWI GCNNNNNNNGC 3 cut(s) 47, 342, 1226
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 2 cut(s) 263, 601
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 862
BstSFI CTRYAG 2 cut(s) 276, 543
BstUI CGCG 2 cut(s) 961, 1236
BstV1I GCAGC 4 cut(s) 40, 62, 557, 1207
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BsuRI GGCC 3 cut(s) 234, 385, 489
BtgI CCRYGG 2 cut(s) 380, 1040
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 5 cut(s) 403, 647, 656, 952, 1138
BtsI GCAGTG 1 cut(s) 1194
BtsIMutI CAGTG 5 cut(s) 25, 99, 591, 660, 1194
Cac8I GCNNGC 4 cut(s) 730, 784, 927, 1347
CaiI CAGNNNCTG 2 cut(s) 56, 479
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 338, 553
CseI GACGC 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 3 cut(s) 533, 588, 768
CviQI GTAC 3 cut(s) 533, 588, 768
DdeI CTNAG 7 cut(s) 141, 315, 324, 387, 1011, 1102, 1297
DpnI GATC 6 cut(s) 146, 442, 568, 745, 1087, 1249
DpnII GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
DraIII CACNNNGTG 2 cut(s) 763, 974
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 189, 1233
EarI CTCTTC 2 cut(s) 189, 1233
EciI GGCGGA 1 cut(s) 1026
Eco130I CCWWGG 2 cut(s) 876, 1040
Eco24I GRGCYC 2 cut(s) 1004, 1351
Eco47I GGWCC 2 cut(s) 338, 553
Eco57I CTGAAG 2 cut(s) 489, 684
Eco91I GGTNACC 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO65I GGTNACC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 2 cut(s) 876, 1040
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 2 cut(s) 1004, 1351
ErhI CCWWGG 2 cut(s) 876, 1040
FaqI GGGAC 2 cut(s) 445, 1349
FauI CCCGC 2 cut(s) 471, 1338
Fnu4HI GCNGC 4 cut(s) 51, 54, 546, 1221
FokI GGATG 5 cut(s) 390, 634, 643, 959, 1145
FriOI GRGCYC 2 cut(s) 1004, 1351
Fsp4HI GCNGC 4 cut(s) 51, 54, 546, 1221
FspBI CTAG 2 cut(s) 342, 561
GlaI GCGC 1 cut(s) 602
GluI GCNGC 4 cut(s) 51, 54, 546, 1221
HaeIII GGCC 3 cut(s) 234, 385, 489
HapII CCGG 1 cut(s) 716
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 603
Hin1I GRCGYC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 1 cut(s) 923
HpaI GTTAAC 1 cut(s) 1021
HpaII CCGG 1 cut(s) 716
HphI GGTGA 2 cut(s) 435, 447
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 8 cut(s) 285, 440, 529, 841, 847, 909, 1014, 1085
Hpy188III TCNNGA 4 cut(s) 148, 716, 1266, 1323
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 3 cut(s) 341, 767, 816
HpyCH4III ACNGT 3 cut(s) 20, 459, 829
HpyCH4IV ACGT 2 cut(s) 415, 1157
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 342, 1226
HpyF3I CTNAG 7 cut(s) 141, 315, 324, 387, 1011, 1102, 1297
HpySE526I ACGT 2 cut(s) 415, 1157
Hsp92I GRCGYC 1 cut(s) 244
HspAI GCGC 1 cut(s) 601
Kpn2I TCCGGA 1 cut(s) 715
KspAI GTTAAC 1 cut(s) 1021
Kzo9I GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 356, 1036
Lsp1109I GCAGC 4 cut(s) 40, 62, 557, 1207
LweI GCATC 7 cut(s) 67, 208, 412, 769, 1018, 1216, 1283
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 2 cut(s) 342, 561
MaeII ACGT 2 cut(s) 415, 1157
MaeIII GTNAC 5 cut(s) 453, 871, 966, 1091, 1230
MalI GATC 6 cut(s) 146, 442, 568, 745, 1087, 1249
MbiI CCGCTC 1 cut(s) 336
MboI GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
MboII GAAGA 6 cut(s) 108, 206, 266, 301, 677, 1250
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 1004, 1351
MluI ACGCGT 1 cut(s) 959
MlyI GAGTC 6 cut(s) 338, 686, 701, 706, 836, 1237
MmeI TCCRAC 1 cut(s) 675
Mph1103I ATGCAT 1 cut(s) 1056
MroI TCCGGA 1 cut(s) 715
MseI TTAA 4 cut(s) 810, 938, 1020, 1064
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 2 cut(s) 53, 1345
MspI CCGG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 864
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 864
MvnI CGCG 2 cut(s) 961, 1236
MwoI GCNNNNNNNGC 3 cut(s) 47, 342, 1226
NcoI CCATGG 1 cut(s) 1040
NdeII GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
NlaIV GGNNCC 3 cut(s) 268, 352, 751
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 453, 966
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 2 cut(s) 263, 601
NspV TTCGAA 1 cut(s) 289
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 286, 428, 494, 881
PkrI GCNGC 4 cut(s) 52, 55, 547, 1222
PleI GAGTC 6 cut(s) 337, 685, 701, 706, 836, 1237
PpsI GAGTC 6 cut(s) 337, 685, 701, 706, 836, 1237
Ppu21I YACGTR 1 cut(s) 416
PscI ACATGT 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 862
PspEI GGTNACC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 3 cut(s) 268, 352, 751
PspPI GGNCC 2 cut(s) 338, 553
PstI CTGCAG 2 cut(s) 280, 547
PstNI CAGNNNCTG 2 cut(s) 56, 479
PsuI RGATCY 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 3 cut(s) 534, 589, 769
RsaNI GTAC 3 cut(s) 533, 588, 768
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 4 cut(s) 810, 938, 1020, 1064
SatI GCNGC 4 cut(s) 51, 54, 546, 1221
Sau3AI GATC 6 cut(s) 144, 440, 566, 743, 1085, 1247
Sau96I GGNCC 2 cut(s) 338, 553
SchI GAGTC 6 cut(s) 338, 686, 701, 706, 836, 1237
ScrFI CCNGG 1 cut(s) 864
SduI GDGCHC 2 cut(s) 1004, 1351
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 7 cut(s) 67, 208, 412, 769, 1018, 1216, 1283
SfcI CTRYAG 2 cut(s) 276, 543
SfuI TTCGAA 1 cut(s) 289
SinI GGWCC 2 cut(s) 338, 553
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 104, 802
SmoI CTYRAG 2 cut(s) 104, 802
SsiI CCGC 6 cut(s) 336, 391, 464, 1037, 1130, 1345
SspMI CTAG 2 cut(s) 342, 561
StyD4I CCNGG 1 cut(s) 862
StyI CCWWGG 2 cut(s) 876, 1040
TaaI ACNGT 3 cut(s) 20, 459, 829
TaiI ACGT 2 cut(s) 418, 1160
TaqI TCGA 5 cut(s) 289, 332, 426, 710, 1246
TatI WGTACW 2 cut(s) 532, 767
TfiI GAWTC 4 cut(s) 286, 428, 494, 881
Tru1I TTAA 4 cut(s) 810, 938, 1020, 1064
Tru9I TTAA 4 cut(s) 810, 938, 1020, 1064
TscAI CASTG 5 cut(s) 25, 99, 598, 667, 1194
TseFI GTSAC 2 cut(s) 453, 966
TseI GCWGC 4 cut(s) 50, 53, 545, 1220
Tsp45I GTSAC 2 cut(s) 453, 966
TspDTI ATGAA 6 cut(s) 573, 749, 1113, 1149, 1157, 1328
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 5 cut(s) 25, 99, 598, 667, 1194
VpaK11BI GGWCC 2 cut(s) 338, 553
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 2 cut(s) 722, 1194
XceI RCATGY 2 cut(s) 263, 601
XspI CTAG 2 cut(s) 342, 561
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.