Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Reverse (-)

55024794 .. 55027727

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0406800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAGCAAAGAGACCCACCCAAGTCCCATTACAAGATGGATGTCGAGCTGGATAGGCTCAGCAATTTACCATGTCATATTATAGATCAGATTTTGCAACATATGCCTATAAAGGAGGCAGTGAGGACGAGTGTTCTGTCAACCAAATGGAGGTACAAATCATCTACGCTCGGCCATCTTGTGTTTGATCATCAGTGTGTCTCTGGTCGAAACCAAACAACCTTTGTGAACATTGTTGATCATGTTCTCTTATTGCACACTGGTCCCATACACATGTTCAAGCTTTCAAATCGAGACTTTCTTGCTACTAGTGACATTGACCGCTGGATTCTTTATCTCTCAAGATGCTCTGTTAAAGAGTTCATACTTGAAATCTGGAAAGGGCCTCGCTTCACAATACCTTCGCGTTTGTTTTCTCTACAAGAAATGACTCATCTGGAGTTATTTAATTGTTTACTAAAACCACCCTTGACATTCAAGGGCTTTAGGAGTTTGAAGAGCTTAGATATTCAGCATGTTACCTTGGCCCAAGATGTGTTTGAAAAGCTGATTGTTTGCTGTCCTCTGCTTGAGAGATTGACTTTGATGAACTTTGACGGTTTCACTGATCTCAACATTGATGCTCCGAATCTCCAATTCTTTGACGTCGGAGGTTCTTTTGAGGATGTTAATTTTGTGAATACCTTGAACCTTACTGTTGTTTCCATTGCTTTGTACGAGCATGGACCCAATCAACAAAGACGGTCTCCTCGTAATTCTGGCAATTTGGTCAAGTTTTTTGCTCAGCTACCTCATGTTCAGAGGCTTGAAATTCAGAGTCACTTTTTAAAGTATTTGGCTGCTGGTGTTGTGTCAGGAAAGCTGCCTAAACCATGTCTAGATCTGAATTTCCTTTCTATACGCGTTTACTTCAGTGATTGGGAGGAGGTTTTAACCGCTGTATTCCTTCTGCGAAGCTCCCCTTCACTGCAAGAACTAGAAATTTTGGTCCGCCCTGATGAACAGCCTGCTGCTGGAAAAACCAATTTTTCGGTAAATGACAACTGCAATCGCCCATTTGCCCAACTACGACTTGTGAAAATTAGCGGCATCTCCGATATCGAAATTCAGGTAGATTTTATCAGATTTCTGCTTTCTAATTCACCCATGCTTGAGAAGATGATTGTTAAGCCTGCTTCTGTCAATTGGGAGCTGGTAAAAAAGTTGCTTCGATTTAAGCGGGCCTCAGCCAATGCAGAGATGATTTACTTGGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

419

Amino Acids

48.21

Weight (kDa)

8.68

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 53	7.4e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	90 - 390	3.5e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	106 - 328	3.8e-15	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	648
AccII	CGCG	2 cut(s)	406, 903
AciI	CCGC	5 cut(s)	322, 936, 991, 1086, 1219
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	4 cut(s)	810, 886, 981, 1104
AcuI	CTGAAG	1 cut(s)	895
AcyI	GRCGYC	1 cut(s)	645
AfaI	GTAC	2 cut(s)	155, 716
AfiI	CCNNNNNNNGG	2 cut(s)	150, 1013
AflIII	ACRYGT	2 cut(s)	273, 901
AgsI	TTSAA	8 cut(s)	280, 288, 371, 478, 496, 542, 688, 809
AhlI	ACTAGT	1 cut(s)	308
AluBI	AGCT	8 cut(s)	49, 283, 501, 547, 787, 862, 957, 1192
AluI	AGCT	8 cut(s)	49, 283, 501, 547, 787, 862, 957, 1192
Alw26I	GTCTC	4 cut(s)	6, 205, 288, 750
AoxI	GGCC	4 cut(s)	172, 383, 525, 1221
ApeKI	GCWGC	3 cut(s)	839, 862, 1010
ApoI	RAATTY	4 cut(s)	810, 886, 981, 1104
AspS9I	GGNCC	7 cut(s)	263, 383, 526, 725, 988, 1221, 1252
AsuHPI	GGTGA	1 cut(s)	1134
AvaII	GGWCC	4 cut(s)	263, 725, 988, 1252
BbvCI	CCTCAGC	1 cut(s)	1225
BbvI	GCAGC	3 cut(s)	826, 849, 997
BccI	CCATC	2 cut(s)	31, 183
BclI	TGATCA	2 cut(s)	187, 238
BcoDI	GTCTC	4 cut(s)	6, 205, 288, 750
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	3 cut(s)	309, 878, 977
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	4 cut(s)	840, 863, 1011, 1087
BlpI	GCTNAGC	2 cut(s)	59, 783
BlsI	GCNGC	4 cut(s)	841, 864, 1012, 1088
Bme18I	GGWCC	4 cut(s)	263, 725, 988, 1252
BmgT120I	GGNCC	7 cut(s)	263, 383, 526, 725, 988, 1221, 1252
BmiI	GGNNCC	3 cut(s)	265, 727, 1254
BmsI	GCATC	3 cut(s)	335, 610, 1098
BpmI	CTGGAG	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	1225
Bpu1102I	GCTNAGC	2 cut(s)	59, 783
BpuEI	CTTGAG	3 cut(s)	325, 590, 1172
BsaHI	GRCGYC	1 cut(s)	645
BsaI	GGTCTC	2 cut(s)	6, 750
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 1013
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	46, 670
BseLI	CCNNNNNNNGG	2 cut(s)	150, 1013
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	73, 797, 1239
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	738, 938
BseXI	GCAGC	3 cut(s)	826, 849, 997
Bsh1236I	CGCG	2 cut(s)	406, 903
BshFI	GGCC	4 cut(s)	174, 385, 527, 1223
BslFI	GGGAC	2 cut(s)	10, 249
BslI	CCNNNNNNNGG	2 cut(s)	150, 1013
BsmAI	GTCTC	4 cut(s)	6, 205, 288, 750
BsmFI	GGGAC	2 cut(s)	10, 249
BsnI	GGCC	4 cut(s)	174, 385, 527, 1223
Bso31I	GGTCTC	2 cut(s)	6, 750
Bsp143I	GATC	5 cut(s)	85, 187, 238, 607, 880
Bsp1720I	GCTNAGC	2 cut(s)	59, 783
BspACI	CCGC	5 cut(s)	322, 936, 991, 1086, 1219
BspANI	GGCC	4 cut(s)	174, 385, 527, 1223
BspCNI	CTCAG	3 cut(s)	72, 796, 1238
BspFNI	CGCG	2 cut(s)	406, 903
BspLI	GGNNCC	3 cut(s)	265, 727, 1254
BspQI	GCTCTTC	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	6, 750
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	85, 187, 238, 607, 880
BssNI	GRCGYC	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	599, 697, 744
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	1008, 1173, 1221
BstDEI	CTNAG	4 cut(s)	59, 502, 783, 1225
BstF5I	GGATG	2 cut(s)	46, 670
BstFNI	CGCG	2 cut(s)	406, 903
BstKTI	GATC	5 cut(s)	88, 190, 241, 610, 883
BstMAI	GTCTC	4 cut(s)	6, 205, 288, 750
BstMBI	GATC	5 cut(s)	85, 187, 238, 607, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 103
BstNSI	RCATGY	2 cut(s)	277, 518
BstUI	CGCG	2 cut(s)	406, 903
BstV1I	GCAGC	3 cut(s)	826, 849, 997
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	174, 385, 527, 1223
BtsCI	GGATG	2 cut(s)	46, 670
BtsI	GCAGTG	2 cut(s)	126, 965
BtsIMutI	CAGTG	6 cut(s)	126, 200, 258, 603, 919, 965
Cac8I	GCNNGC	3 cut(s)	1008, 1173, 1221
Cfr13I	GGNCC	7 cut(s)	263, 383, 526, 725, 988, 1221, 1252
Csp6I	GTAC	2 cut(s)	154, 715
CviAII	CATG	9 cut(s)	72, 242, 274, 515, 722, 794, 873, 1147, 1257
CviQI	GTAC	2 cut(s)	154, 715
DdeI	CTNAG	4 cut(s)	59, 502, 783, 1225
DpnI	GATC	5 cut(s)	87, 189, 240, 609, 882
DpnII	GATC	5 cut(s)	85, 187, 238, 607, 880
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	980
Eco130I	CCWWGG	1 cut(s)	522
Eco31I	GGTCTC	2 cut(s)	6, 750
Eco32I	GATATC	1 cut(s)	1099
Eco47I	GGWCC	4 cut(s)	263, 725, 988, 1252
Eco57I	CTGAAG	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	1099
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	9 cut(s)	75, 245, 277, 518, 725, 797, 876, 1150, 1260
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FaqI	GGGAC	2 cut(s)	10, 249
FatI	CATG	9 cut(s)	71, 241, 273, 514, 721, 793, 872, 1146, 1256
FauI	CCCGC	1 cut(s)	1212
FauNDI	CATATG	1 cut(s)	102
FbaI	TGATCA	2 cut(s)	187, 238
Fnu4HI	GCNGC	4 cut(s)	840, 863, 1011, 1087
FokI	GGATG	2 cut(s)	53, 677
Fsp4HI	GCNGC	4 cut(s)	840, 863, 1011, 1087
FspBI	CTAG	3 cut(s)	309, 878, 977
GluI	GCNGC	4 cut(s)	840, 863, 1011, 1087
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	174, 385, 527, 1223
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	9 cut(s)	75, 245, 277, 518, 725, 797, 876, 1150, 1260
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	4 cut(s)	328, 430, 628, 817
HphI	GGTGA	1 cut(s)	1134
Hpy166II	GTNNAC	4 cut(s)	141, 229, 455, 907
Hpy188I	TCNGA	8 cut(s)	90, 627, 650, 801, 816, 885, 1096, 1124
Hpy188III	TCNNGA	6 cut(s)	293, 342, 376, 437, 855, 878
Hpy8I	GTNNAC	4 cut(s)	141, 229, 455, 907
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	411, 956, 972
HpyCH4III	ACNGT	3 cut(s)	599, 697, 744
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	5 cut(s)	97, 256, 970, 1047, 1235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 103
HpyF3I	CTNAG	4 cut(s)	59, 502, 783, 1225
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	9 cut(s)	75, 245, 277, 518, 725, 797, 876, 1150, 1260
Ksp22I	TGATCA	2 cut(s)	187, 238
Kzo9I	GATC	5 cut(s)	85, 187, 238, 607, 880
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	3 cut(s)	628, 962, 1189
Lsp1109I	GCAGC	3 cut(s)	826, 849, 997
LweI	GCATC	3 cut(s)	335, 610, 1098
MaeI	CTAG	3 cut(s)	309, 878, 977
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	311, 517, 818
MalI	GATC	5 cut(s)	87, 189, 240, 609, 882
MboI	GATC	5 cut(s)	85, 187, 238, 607, 880
MboII	GAAGA	2 cut(s)	508, 1168
MfeI	CAATTG	1 cut(s)	1183
MflI	RGATCY	1 cut(s)	880
MluI	ACGCGT	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	424, 826
MmeI	TCCRAC	1 cut(s)	628
MseI	TTAA	7 cut(s)	354, 447, 669, 827, 932, 1167, 1215
MslI	CAYNNNNRTG	2 cut(s)	195, 272
MspA1I	CMGCKG	2 cut(s)	324, 938
MunI	CAATTG	1 cut(s)	1183
MvnI	CGCG	2 cut(s)	406, 903
MwoI	GCNNNNNNNGC	2 cut(s)	55, 103
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	5 cut(s)	85, 187, 238, 607, 880
NlaIII	CATG	9 cut(s)	75, 245, 277, 518, 725, 797, 876, 1150, 1260
NlaIV	GGNNCC	3 cut(s)	265, 727, 1254
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	311, 818
NspI	RCATGY	2 cut(s)	277, 518
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	328, 628
PkrI	GCNGC	4 cut(s)	841, 864, 1012, 1088
PleI	GAGTC	2 cut(s)	424, 825
PpsI	GAGTC	2 cut(s)	424, 825
PscI	ACATGT	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	265, 727, 1254
PspPI	GGNCC	7 cut(s)	263, 383, 526, 725, 988, 1221, 1252
PsuI	RGATCY	1 cut(s)	880
RsaI	GTAC	2 cut(s)	155, 716
RsaNI	GTAC	2 cut(s)	154, 715
RseI	CAYNNNNRTG	2 cut(s)	195, 272
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	7 cut(s)	354, 447, 669, 827, 932, 1167, 1215
SatI	GCNGC	4 cut(s)	840, 863, 1011, 1087
Sau3AI	GATC	5 cut(s)	85, 187, 238, 607, 880
Sau96I	GGNCC	7 cut(s)	263, 383, 526, 725, 988, 1221, 1252
SchI	GAGTC	2 cut(s)	424, 826
SfaNI	GCATC	3 cut(s)	335, 610, 1098
SinI	GGWCC	4 cut(s)	263, 725, 988, 1252
SmiMI	CAYNNNNRTG	2 cut(s)	195, 272
SmlI	CTYRAG	3 cut(s)	340, 569, 1151
SmoI	CTYRAG	3 cut(s)	340, 569, 1151
SpeI	ACTAGT	1 cut(s)	308
SsiI	CCGC	5 cut(s)	322, 936, 991, 1086, 1219
SspMI	CTAG	3 cut(s)	309, 878, 977
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	599, 697, 744
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	5 cut(s)	45, 208, 292, 1101, 1210
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	2 cut(s)	328, 628
Tru1I	TTAA	7 cut(s)	354, 447, 669, 827, 932, 1167, 1215
Tru9I	TTAA	7 cut(s)	354, 447, 669, 827, 932, 1167, 1215
TscAI	CASTG	6 cut(s)	126, 200, 265, 610, 919, 972
TseFI	GTSAC	2 cut(s)	311, 818
TseI	GCWGC	3 cut(s)	839, 862, 1010
Tsp45I	GTSAC	2 cut(s)	311, 818
TspDTI	ATGAA	4 cut(s)	17, 352, 602, 1014
TspRI	CASTG	6 cut(s)	126, 200, 265, 610, 919, 972
VpaK11BI	GGWCC	4 cut(s)	263, 725, 988, 1252
XapI	RAATTY	4 cut(s)	810, 886, 981, 1104
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	2 cut(s)	277, 518
XspI	CTAG	3 cut(s)	309, 878, 977
ZraI	GACGTC	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.