Rh7BG192900
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008575
Physical Location & Seq
Forward (+)
15734721 .. 15737433
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG192900.1

Sequence Viewer

Length: 360 bp
ATGACTGAAATCAAGGACATTTCTTCATTTGGCAATGACCAGGCACTTAAGGTCAGGAAACCTTACACAATTAAAAAACAAAGAGAAAAATGGACAGAGGAAGAACATCAGAAGTTCCTTGAAGCCTTGAAATTGTATGGCCGAGGTTGGCGTCAAATAGAAGAACATGTAGGCACCAAATCTGCAGTTCAGATACGAAGTCATGCTCAAAAGTTCTTCTCTAAGGTAGCTAATAGGCGGAAACCTATGCATCCTTATCCACGTAAACTCAATGGGTCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCAGTTGCTGAGAAAGGCCAAGAATATTGTCTATACCTGGTTCTGATGTAA

Protein Analysis

119

Amino Acids

14.05

Weight (kDa)

9.96

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 71 2.4e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 151
AflII CTTAAG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 122, 130
AjnI CCWGG 2 cut(s) 39, 345
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 139, 325
ApoI RAATTY 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 270, 285
BanI GGYRCC 1 cut(s) 173
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 41, 347
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 41, 347
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 41, 347
BmsI GCATC 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 41, 347
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 309
BshFI GGCC 2 cut(s) 141, 327
BshNI GGYRCC 1 cut(s) 173
BsnI GGCC 2 cut(s) 141, 327
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 141, 327
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 41, 347
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 222, 318
BstEII GGTNACC 2 cut(s) 276, 291
BstF5I GGATG 1 cut(s) 250
BstNI CCWGG 2 cut(s) 41, 347
BstNSI RCATGY 1 cut(s) 170
BstPI GGTNACC 2 cut(s) 276, 291
BstSCI CCNGG 2 cut(s) 39, 345
BstSFI CTRYAG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 141, 327
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 317
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 345
CviAII CATG 2 cut(s) 167, 203
CviJI RGCY 4 cut(s) 125, 141, 230, 327
CviKI_1 RGCY 4 cut(s) 125, 141, 230, 327
DdeI CTNAG 2 cut(s) 222, 318
EaeI YGGCCR 1 cut(s) 139
EciI GGCGGA 1 cut(s) 253
Eco91I GGTNACC 2 cut(s) 276, 291
EcoO65I GGTNACC 2 cut(s) 276, 291
EcoRII CCWGG 2 cut(s) 39, 345
EcoT22I ATGCAT 1 cut(s) 252
FaeI CATG 2 cut(s) 170, 206
FaiI YATR 5 cut(s) 138, 168, 204, 248, 343
FatI CATG 2 cut(s) 166, 202
FokI GGATG 1 cut(s) 237
HaeIII GGCC 2 cut(s) 141, 327
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 2 cut(s) 170, 206
HphI GGTGA 2 cut(s) 270, 285
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 3 cut(s) 111, 192, 354
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 185, 250
HpyF3I CTNAG 2 cut(s) 222, 318
HpySE526I ACGT 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 170, 206
LpnPI CCDG 5 cut(s) 26, 40, 53, 294, 332
LweI GCATC 1 cut(s) 259
MabI ACCWGGT 1 cut(s) 345
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 276, 291
MboII GAAGA 4 cut(s) 15, 113, 173, 208
MluCI AATT 3 cut(s) 69, 131, 304
MnlI CCTC 3 cut(s) 91, 137, 282
Mph1103I ATGCAT 1 cut(s) 252
MseI TTAA 2 cut(s) 48, 72
MspCI CTTAAG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 41, 347
MvaI CCWGG 2 cut(s) 41, 347
NlaIII CATG 2 cut(s) 170, 206
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 276, 291
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 263
PscI ACATGT 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 39, 345
PspEI GGTNACC 2 cut(s) 276, 291
PspGI CCWGG 2 cut(s) 39, 345
PspN4I GGNNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 48, 72
ScrFI CCNGG 2 cut(s) 41, 347
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 69, 131, 304
SsiI CCGC 1 cut(s) 238
SspI AATATT 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 39, 345
TaiI ACGT 1 cut(s) 265
TasI AATT 3 cut(s) 69, 131, 304
Tru1I TTAA 2 cut(s) 48, 72
Tru9I TTAA 2 cut(s) 48, 72
TseFI GTSAC 2 cut(s) 276, 291
Tsp45I GTSAC 2 cut(s) 276, 291
TspDTI ATGAA 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 47
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.