Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008575

Physical Location & Seq

Genomic Coordinates Reverse (-)

482268 .. 485611

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCATCCTTATCCACGTAAACTCAATGGATCACCTGAAAGGAGGTCACCATCGCCAAATTTTTCGGTTGCTGAGAAAGGCCAAGAATCCCCCACTTCAGTATTGTCTGTACCTGGTTCTGATGTAATTGGGTCTGCAGCTTTGGACCAGTATAACAGATCTCCACCTTCAACTTCATGTACCACTGACATGCGATCAACCAACTTATCCCATGTTGAGAAAGAGAATGACTATGCAACGTCCAACTCATCCCTTGAAGAAGCAAAAGAATCTATGCCACCTGTCGACTCAACCTTGGATGAACCTCTCTCCATGAAAGATGAATCGGCTTCCAAGTACACTTCAACTACTGAAGGAGATGCAGCCACAGTGGGAGGTTCCACTAGCATTAAGCTTTTTGGAAGGACAGTTTTGGTGTCAGACCTGCATAAACAATCTCCTCCTGATACCAAGGATTGTACTCTGTCGATATCCATGGCCAAACAAGAGAATTATGAGATTGAGTGTGGTAAGTTTGGTCAACCATTACAATGGGATCAATCGGACACACGCTTGTCACTTGGTGGAGTAGTTAGTAATTGGAATTCTTTGGCATGTGGTTCCACAATTGACAGGGCGGAACACCAAAATGAGAGCCCCAAGTCTGTGCAAGCCAACCCCGATGCTCCTCATCCCTTGCCATGGTGGGTTAATCTACCATTTTGTCAGGTCATACGTGTCGATTCTCGTGTTGATGAACAATTGAAAGAGAAGGAAAGATCTTGCGCTGGTTCAAACGATGGGTCAGTTAGTTCAATTGATTCTTTATGTGAAGAAGCTCGTAGTGTTGTGCCCTGCAATTCAAGGAAGGGGTTTGTACCATACAAAAGATGTTTAGCAGATACAAACAGGAACTCATCGGTGATAGTATCTGAAGAGATGAGGGACAGACAAAGGGCTCGTGTTTGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

34.64

Weight (kDa)

5.21

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18330 AT1G18330 AT3G10113 AT5G37260
fragaria_vesca	FvH4_5g18100 FvH4_5g18100
malus_domestica	MD06G1236500.v1.1 MD14G1243400.v1.1
prunus_persica	Prupe.5G241000_v2.0.a1
pyrus_communis	pycom06g21220 pycom14g20470
rosa_chinensis	RchiOBHm_Chr7g0177511
rosa_laevigata	RLG00000005531
rosa_multiflora	Rmu_co8458561.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275810
rosa_rugosa	Rorug06G0406800
rosa_samantha	Rh4DG099700 Rh7AG006200 Rh7BG006100 Rh7BG192900 Rh7CG006500 Rh7DG006000
rosa_wichuraiana	Rw7G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	2 cut(s)	37, 543
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	58, 583
AcuI	CTGAAG	3 cut(s)	81, 372, 933
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	5 cut(s)	111, 181, 338, 460, 858
AfiI	CCNNNNNNNGG	1 cut(s)	681
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	7 cut(s)	171, 257, 345, 745, 774, 795, 843
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	3 cut(s)	140, 394, 818
AluI	AGCT	3 cut(s)	140, 394, 818
AlwI	GGATC	2 cut(s)	37, 543
AoxI	GGCC	2 cut(s)	79, 477
ApeKI	GCWGC	2 cut(s)	137, 362
ApoI	RAATTY	2 cut(s)	58, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspLEI	GCGC	1 cut(s)	767
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	24, 39, 913
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	834
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	2 cut(s)	638, 940
BauI	CACGAG	2 cut(s)	726, 939
BbvI	GCAGC	2 cut(s)	149, 374
BccI	CCATC	2 cut(s)	58, 773
BciT130I	CCWGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	432
BglII	AGATCT	2 cut(s)	158, 758
BisI	GCNGC	2 cut(s)	138, 363
BlsI	GCNGC	2 cut(s)	139, 364
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	379, 601
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	3 cut(s)	13, 349, 652
BsaAI	YACGTR	2 cut(s)	17, 716
BsaJI	CCNNGG	4 cut(s)	294, 450, 474, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	294, 450, 474, 680
BseGI	GGATG	4 cut(s)	4, 248, 304, 670
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	429, 657
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	149, 374
BshFI	GGCC	2 cut(s)	81, 479
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	938
BsnI	GGCC	2 cut(s)	81, 479
Bsp1286I	GDGCHC	3 cut(s)	638, 834, 940
Bsp143I	GATC	5 cut(s)	29, 158, 194, 535, 758
Bsp19I	CCATGG	2 cut(s)	474, 680
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	81, 479
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	379, 601
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	37, 543
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	294, 450, 474, 680
BssMI	GATC	5 cut(s)	29, 158, 194, 535, 758
BssSI	CACGAG	2 cut(s)	726, 939
BssT1I	CCWWGG	4 cut(s)	294, 450, 474, 680
Bst2BI	CACGAG	2 cut(s)	726, 939
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	370, 409
Bst6I	CTCTTC	1 cut(s)	909
BstBAI	YACGTR	2 cut(s)	17, 716
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	474, 680
BstEII	GGTNACC	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	4, 248, 304, 670
BstHHI	GCGC	1 cut(s)	767
BstKTI	GATC	5 cut(s)	32, 161, 197, 538, 761
BstMBI	GATC	5 cut(s)	29, 158, 194, 535, 758
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	193, 597
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	149, 374
BstX2I	RGATCY	2 cut(s)	158, 758
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	2 cut(s)	158, 758
BsuRI	GGCC	2 cut(s)	81, 479
BtgI	CCRYGG	2 cut(s)	474, 680
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	4, 248, 304, 670
BtsIMutI	CAGTG	2 cut(s)	183, 375
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	767
Cfr13I	GGNCC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	5 cut(s)	110, 180, 337, 459, 857
CviAII	CATG	7 cut(s)	177, 190, 212, 313, 475, 594, 681
CviQI	GTAC	5 cut(s)	110, 180, 337, 459, 857
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	5 cut(s)	31, 160, 196, 537, 760
DpnII	GATC	5 cut(s)	29, 158, 194, 535, 758
DraIII	CACNNNGTG	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
EciI	GGCGGA	1 cut(s)	632
Eco130I	CCWWGG	4 cut(s)	294, 450, 474, 680
Eco24I	GRGCYC	2 cut(s)	638, 940
Eco32I	GATATC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	3 cut(s)	81, 372, 933
Eco91I	GGTNACC	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	4 cut(s)	294, 450, 474, 680
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	638, 940
ErhI	CCWWGG	4 cut(s)	294, 450, 474, 680
FaeI	CATG	7 cut(s)	180, 193, 215, 316, 478, 597, 684
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	7 cut(s)	176, 189, 211, 312, 474, 593, 680
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	138, 363
FokI	GGATG	3 cut(s)	235, 311, 657
FriOI	GRGCYC	2 cut(s)	638, 940
Fsp4HI	GCNGC	2 cut(s)	138, 363
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	766
GluI	GCNGC	2 cut(s)	138, 363
HaeIII	GGCC	2 cut(s)	81, 479
HhaI	GCGC	1 cut(s)	767
Hin1II	CATG	7 cut(s)	180, 193, 215, 316, 478, 597, 684
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HincII	GTYRAC	2 cut(s)	286, 521
HindII	GTYRAC	2 cut(s)	286, 521
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	6 cut(s)	86, 269, 287, 323, 722, 800
HphI	GGTGA	3 cut(s)	24, 39, 913
Hpy166II	GTNNAC	4 cut(s)	20, 286, 339, 521
Hpy188I	TCNGA	4 cut(s)	121, 421, 544, 913
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	4 cut(s)	20, 286, 339, 521
HpyAV	CCTTC	5 cut(s)	177, 347, 396, 745, 841
HpyCH4III	ACNGT	2 cut(s)	370, 409
HpyCH4IV	ACGT	3 cut(s)	16, 239, 715
HpyCH4V	TGCA	7 cut(s)	4, 137, 236, 362, 427, 649, 837
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	3 cut(s)	16, 239, 715
Hsp92II	CATG	7 cut(s)	180, 193, 215, 316, 478, 597, 684
HspAI	GCGC	1 cut(s)	765
Kzo9I	GATC	5 cut(s)	29, 158, 194, 535, 758
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	2 cut(s)	149, 374
LweI	GCATC	3 cut(s)	13, 349, 652
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	3 cut(s)	16, 239, 715
MaeIII	GTNAC	2 cut(s)	45, 555
MalI	GATC	5 cut(s)	31, 160, 196, 537, 760
MboI	GATC	5 cut(s)	29, 158, 194, 535, 758
MboII	GAAGA	3 cut(s)	269, 824, 926
MfeI	CAATTG	3 cut(s)	606, 740, 795
MflI	RGATCY	2 cut(s)	158, 758
MhlI	GDGCHC	3 cut(s)	638, 834, 940
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	9 cut(s)	58, 126, 490, 577, 583, 606, 740, 795, 838
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	36, 315, 368, 450, 678, 915
Mox20I	TGGCCA	1 cut(s)	479
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	2 cut(s)	390, 690
MslI	CAYNNNNRTG	3 cut(s)	188, 529, 627
Msp20I	TGGCCA	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	3 cut(s)	606, 740, 795
MvaI	CCWGG	1 cut(s)	114
NcoI	CCATGG	2 cut(s)	474, 680
NdeII	GATC	5 cut(s)	29, 158, 194, 535, 758
NlaIII	CATG	7 cut(s)	180, 193, 215, 316, 478, 597, 684
NlaIV	GGNNCC	2 cut(s)	379, 601
NmuCI	GTSAC	2 cut(s)	45, 555
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	193, 597
PfeI	GAWTC	5 cut(s)	86, 269, 323, 722, 800
PkrI	GCNGC	2 cut(s)	139, 364
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	2 cut(s)	17, 716
Psp6I	CCWGG	1 cut(s)	112
PspEI	GGTNACC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	379, 601
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	158, 758
RsaI	GTAC	5 cut(s)	111, 181, 338, 460, 858
RsaNI	GTAC	5 cut(s)	110, 180, 337, 459, 857
RseI	CAYNNNNRTG	3 cut(s)	188, 529, 627
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	390, 690
SatI	GCNGC	2 cut(s)	138, 363
Sau3AI	GATC	5 cut(s)	29, 158, 194, 535, 758
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	3 cut(s)	638, 834, 940
SexAI	ACCWGGT	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	13, 349, 652
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	188, 529, 627
Sse9I	AATT	9 cut(s)	58, 126, 490, 577, 583, 606, 740, 795, 838
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	4 cut(s)	294, 450, 474, 680
TaaI	ACNGT	2 cut(s)	370, 409
TaiI	ACGT	3 cut(s)	19, 242, 718
TaqI	TCGA	3 cut(s)	285, 467, 720
TasI	AATT	9 cut(s)	58, 126, 490, 577, 583, 606, 740, 795, 838
TatI	WGTACW	2 cut(s)	336, 458
TfiI	GAWTC	5 cut(s)	86, 269, 323, 722, 800
Tru1I	TTAA	2 cut(s)	390, 690
Tru9I	TTAA	2 cut(s)	390, 690
TscAI	CASTG	2 cut(s)	190, 375
TseFI	GTSAC	2 cut(s)	45, 555
TseI	GCWGC	2 cut(s)	137, 362
Tsp45I	GTSAC	2 cut(s)	45, 555
TspDTI	ATGAA	5 cut(s)	165, 315, 329, 336, 750
TspRI	CASTG	2 cut(s)	190, 375
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	58, 583
XceI	RCATGY	2 cut(s)	193, 597
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.