Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

6366520 .. 6368879

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTGTCGAGATTGTTCAAGGCAGGTGAAAAGGTTTTGTCGAATCTCGTTAGCAAGAAAGACATTTACATGGCGTCGAGGAATCAGGAGAAATCTCCCAAAGTGCAAGAGCTTTACGACCTCTGCAAAGAGACTTTCACTGGCAAAGCTCCTTCTCCTGCTTCCATGGCTATCCAAAAGCTATGCTCTGTGTTGGACTCAGTTAGTCCTGCAGATGTTGGGCTTGAAGAGGTATCTCAAGACGATGATCGAGGCTATGGAGTTTCTGGGGTTAGCCGTTTCAATAGAGTAGGACGATGGGCACAACCGATAACATTCTTAGACATTCATGAATGTGATACTTTTACAATGTGTATTTTCTGCTTCCCAACGTCTTCAGTGATCCCATTGCATGATCATCCAGAGATGGCTGTGTTTAGTAAAATCCTCTATGGATCACTTCATGTTAAAGCTTACGATTGGGTCGAACCTCCATGTATTATCACACAAGATAAAGGCGTCCCCGGTTCTCTTCCAGCAAGGTTGGCGAAATTGGTGAGTGACAAAGTTATAACGCCTCAGTCTGAGATACCGGCGTTGTACCCAAAGACTGGAGGCAATCTCCATTGCTTCACTGCGTTGACTCCATGTGCTGTGCTCGACATTCTCTCACCTCCTTACAAAGAAAGTGTTGGCAGGAGTTGCAGTTACTACATGGACTATCCGTTTTCCACTTTCGCATTGGAGAACGGAATGAAGAAGGTGGATGAAGGAAAGGAAGACGAATACGCATGGCTTGTACAGATTGACACGCCCGATGATCTTCACATGCGTCCCGGATCATATACTGGTCCAACTATCAGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

282

Amino Acids

31.29

Weight (kDa)

5.56

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	64 - 280	8.8e-74	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	590
AclWI	GGATC	3 cut(s)	376, 442, 826
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	2 cut(s)	74, 498
AfaI	GTAC	2 cut(s)	581, 780
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	19, 227, 283
AluBI	AGCT	4 cut(s)	112, 149, 181, 452
AluI	AGCT	4 cut(s)	112, 149, 181, 452
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	376, 442, 826
AspS9I	GGNCC	1 cut(s)	830
AsuC2I	CCSGG	2 cut(s)	504, 816
AsuHPI	GGTGA	3 cut(s)	38, 547, 642
AvaII	GGWCC	1 cut(s)	830
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	560, 593
BbsI	GAAGAC	2 cut(s)	366, 765
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	2 cut(s)	291, 400
BceAI	ACGGC	1 cut(s)	261
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	2 cut(s)	504, 816
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	847
BfmI	CTRYAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	504, 816
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	830
BmrFI	CCNGG	2 cut(s)	504, 816
BpiI	GAAGAC	2 cut(s)	366, 765
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	504, 816
BsaHI	GRCGYC	2 cut(s)	74, 498
BsaJI	CCNNGG	2 cut(s)	165, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	145, 595, 832
Bse3DI	GCAATG	2 cut(s)	386, 604
BseDI	CCNNGG	2 cut(s)	165, 502
BseGI	GGATG	2 cut(s)	397, 751
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	2 cut(s)	386, 604
BseMII	CTCAG	3 cut(s)	213, 555, 572
BseNI	ACTGG	3 cut(s)	145, 595, 832
BseSI	GKGCMC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	504, 572, 816
BslFI	GGGAC	2 cut(s)	485, 798
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	485, 798
Bsp1286I	GDGCHC	2 cut(s)	304, 639
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
Bsp19I	CCATGG	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	212, 556, 571
BspHI	TCATGA	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	3 cut(s)	376, 442, 826
BsrDI	GCAATG	2 cut(s)	386, 604
BsrFI	RCCGGY	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	145, 595, 832
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	165, 502
BssMI	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
BssNI	GRCGYC	2 cut(s)	74, 498
BssT1I	CCWWGG	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	222, 516
BstACI	GRCGYC	2 cut(s)	74, 498
BstAPI	GCANNNNNTGC	1 cut(s)	681
BstAUI	TGTACA	1 cut(s)	778
BstDEI	CTNAG	4 cut(s)	199, 319, 558, 564
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	397, 751
BstKTI	GATC	6 cut(s)	250, 384, 397, 437, 802, 821
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 524, 681
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	2 cut(s)	502, 814
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	366, 765
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	397, 751
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	138, 384, 612
BveI	ACCTGC	1 cut(s)	14
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	830
CseI	GACGC	3 cut(s)	63, 487, 800
Csp6I	GTAC	2 cut(s)	580, 779
CviQI	GTAC	2 cut(s)	580, 779
DdeI	CTNAG	4 cut(s)	199, 319, 558, 564
DpnI	GATC	6 cut(s)	249, 383, 396, 436, 801, 820
DpnII	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
Eam1104I	CTCTTC	2 cut(s)	222, 516
EarI	CTCTTC	2 cut(s)	222, 516
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaqI	GGGAC	2 cut(s)	485, 798
FbaI	TGATCA	1 cut(s)	394
FokI	GGATG	2 cut(s)	384, 758
FspBI	CTAG	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	612
HapII	CCGG	3 cut(s)	504, 572, 816
HgaI	GACGC	3 cut(s)	63, 487, 800
Hin1I	GRCGYC	2 cut(s)	74, 498
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	5 cut(s)	43, 82, 197, 622, 843
HpaII	CCGG	3 cut(s)	504, 572, 816
HphI	GGTGA	3 cut(s)	38, 547, 642
Hpy166II	GTNNAC	1 cut(s)	621
Hpy188I	TCNGA	2 cut(s)	565, 842
Hpy188III	TCNNGA	5 cut(s)	9, 86, 239, 329, 401
Hpy8I	GTNNAC	1 cut(s)	621
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	162, 733, 743
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	106, 126, 212, 391, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 524, 681
HpyF3I	CTNAG	4 cut(s)	199, 319, 558, 564
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	2 cut(s)	74, 498
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
LmnI	GCTCC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	847
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	539, 686
MalI	GATC	6 cut(s)	249, 383, 396, 436, 801, 820
MboI	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
MboII	GAAGA	6 cut(s)	239, 366, 503, 748, 770, 794
MhlI	GDGCHC	2 cut(s)	304, 639
MluCI	AATT	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	191, 616
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	72, 131, 223, 245, 437, 480, 567, 587, 663
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	68, 333
MspI	CCGG	3 cut(s)	504, 572, 816
MspR9I	CCNGG	2 cut(s)	504, 816
MwoI	GCNNNNNNNGC	3 cut(s)	167, 524, 681
NciI	CCSGG	2 cut(s)	504, 816
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	811
PagI	TCATGA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	43, 82
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	814
PleI	GAGTC	2 cut(s)	191, 616
PpsI	GAGTC	2 cut(s)	191, 616
PsiI	TTATAA	1 cut(s)	551
PspPI	GGNCC	1 cut(s)	830
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	581, 780
RsaNI	GTAC	2 cut(s)	580, 779
RseI	CAYNNNNRTG	2 cut(s)	68, 333
SaqAI	TTAA	1 cut(s)	447
Sau3AI	GATC	6 cut(s)	247, 381, 394, 434, 799, 818
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	2 cut(s)	191, 616
ScrFI	CCNGG	2 cut(s)	504, 816
SduI	GDGCHC	2 cut(s)	304, 639
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	2 cut(s)	68, 333
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	847
StyD4I	CCNGG	2 cut(s)	502, 814
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	6 cut(s)	8, 41, 77, 250, 465, 639
TasI	AATT	1 cut(s)	530
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	43, 82
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	145, 384, 619
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	5 cut(s)	317, 345, 431, 749, 762
TspGWI	ACGGA	2 cut(s)	693, 744
TspRI	CASTG	3 cut(s)	145, 384, 619
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	830
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XspI	CTAG	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.