Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

34220840 .. 34223425

Gene Structure 2586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGAGGAAGAGCTCGAAAGTTCAGGCTCTCTACGAGCTCTGCCAAACGGTATTCACGCCGTCAGGGTCTCCTCCCCCTTCTTCTCCGGCTATCAATAAGCTCCGTTCTGTCCTCGATGCGATGTCTCCTACTGATGTTGGGCTTAAAGAGGAAAATCAGGATGATGATCGAGGGCTTGGTTTTGTTGGACTTGACCAACTAAAAAAAGTTTCTCGGTGTGCTCAACCAATAACGTACTTGGATATGTATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCGCTTCATGACCATCCTGGGATGACTGTTTTTAGCAAAGTTCTTTATGGCTCTTTGCACGTGAGATCTTATGATTGGGTTGAGCCTGCCCAGGAGATAAAGGGACCAAATTACTTTCCAGTAAGATTGGCGAAGCTGGCAGTTGACAAGGTTTTAACACCACCATGTGGGACATCAGTTTTGTATCCAAGGAGTGGGGGCAATCTGCATAATTTCACGGCAGTCACTCCTTGTGCTGTTCTTGACATTCTCACTCCTCCTTACAGAGAAGATGCAGGCAGAAAATGTACCTACTACCGTGATTACCCTTATACTGCCTTAGCTACAGAAAACGGAATTAAATTAAAGGATGGTAGAGAAGAGGAGTATGCATGGCTTGCTGAGACAGAACCACATAATCTTTATATGCGCTCGGGAAATTACACAGGCCCGTCTATTCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

251

Amino Acids

27.8

Weight (kDa)

5.97

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	38 - 248	4.4e-72	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	473, 500
AciI	CCGC	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	239, 595
AfiI	CCNNNNNNNGG	2 cut(s)	473, 500
AjnI	CCWGG	2 cut(s)	322, 396
AluBI	AGCT	5 cut(s)	15, 40, 103, 442, 629
AluI	AGCT	5 cut(s)	15, 40, 103, 442, 629
Alw21I	GWGCWC	3 cut(s)	17, 42, 226
Alw26I	GTCTC	3 cut(s)	75, 132, 683
Ama87I	CYCGRG	1 cut(s)	718
AoxI	GGCC	1 cut(s)	733
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	410, 734
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	17, 42
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	3 cut(s)	17, 42, 226
BccI	CCATC	2 cut(s)	327, 650
BceAI	ACGGC	2 cut(s)	46, 540
BciT130I	CCWGG	2 cut(s)	324, 398
BciVI	GTATCC	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	75, 132, 683
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	324, 398
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	410, 734
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	324, 398
BmsI	GCATC	2 cut(s)	109, 568
Bpu10I	CCTNAGC	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	323, 396, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 500
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	324, 398
BseDI	CCNNGG	3 cut(s)	323, 396, 494
BseGI	GGATG	4 cut(s)	169, 319, 333, 661
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	473, 500
BseMII	CTCAG	2 cut(s)	312, 678
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	3 cut(s)	63, 552, 683
BshFI	GGCC	1 cut(s)	735
BsiHKAI	GWGCWC	3 cut(s)	17, 42, 226
BsiHKCI	CYCGRG	1 cut(s)	718
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	423, 490
BslI	CCNNNNNNNGG	2 cut(s)	473, 500
BsmAI	GTCTC	3 cut(s)	75, 132, 683
BsmFI	GGGAC	2 cut(s)	423, 490
BsnI	GGCC	1 cut(s)	735
Bso31I	GGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	718
Bsp1286I	GDGCHC	3 cut(s)	17, 42, 226
Bsp143I	GATC	2 cut(s)	169, 371
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	735
BspCNI	CTCAG	2 cut(s)	311, 679
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	323, 396, 494
BssMI	GATC	2 cut(s)	169, 371
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	324, 398
Bst4CI	ACNGT	3 cut(s)	52, 334, 605
Bst6I	CTCTTC	2 cut(s)	5, 660
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	4 cut(s)	393, 444, 583, 684
BstDEI	CTNAG	3 cut(s)	298, 625, 687
BstF5I	GGATG	4 cut(s)	169, 319, 333, 661
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	2 cut(s)	172, 374
BstMAI	GTCTC	3 cut(s)	75, 132, 683
BstMBI	GATC	2 cut(s)	169, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 683
BstNI	CCWGG	2 cut(s)	324, 398
BstSCI	CCNGG	2 cut(s)	322, 396
BstSFI	CTRYAG	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	169, 319, 333, 661
Cac8I	GCNNGC	4 cut(s)	393, 444, 583, 684
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	2 cut(s)	410, 734
Csp6I	GTAC	2 cut(s)	238, 594
CviAII	CATG	3 cut(s)	314, 471, 678
CviQI	GTAC	2 cut(s)	238, 594
DdeI	CTNAG	3 cut(s)	298, 625, 687
DpnI	GATC	2 cut(s)	171, 373
DpnII	GATC	2 cut(s)	169, 371
DraIII	CACNNNGTG	1 cut(s)	473
Eam1104I	CTCTTC	2 cut(s)	5, 660
EarI	CTCTTC	2 cut(s)	5, 660
Ecl136II	GAGCTC	2 cut(s)	15, 40
Eco130I	CCWWGG	1 cut(s)	494
Eco24I	GRGCYC	2 cut(s)	17, 42
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	2 cut(s)	15, 40
Eco72I	CACGTG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	718
EcoICRI	GAGCTC	2 cut(s)	15, 40
EcoRII	CCWGG	2 cut(s)	322, 396
EcoT14I	CCWWGG	1 cut(s)	494
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	17, 42
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	317, 474, 681
FaqI	GGGAC	2 cut(s)	423, 490
FatI	CATG	3 cut(s)	313, 470, 677
FokI	GGATG	4 cut(s)	176, 306, 340, 668
FriOI	GRGCYC	2 cut(s)	17, 42
GlaI	GCGC	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	735
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	3 cut(s)	317, 474, 681
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	161, 314, 548, 720
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	90, 248
HpyCH4III	ACNGT	3 cut(s)	52, 334, 605
HpyCH4IV	ACGT	2 cut(s)	236, 366
HpyCH4V	TGCA	4 cut(s)	364, 514, 581, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 683
HpyF3I	CTNAG	3 cut(s)	298, 625, 687
HpySE526I	ACGT	2 cut(s)	236, 366
Hsp92II	CATG	3 cut(s)	317, 474, 681
HspAI	GCGC	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	169, 371
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	108
LweI	GCATC	2 cut(s)	109, 568
MaeII	ACGT	2 cut(s)	236, 366
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	171, 373
MboI	GATC	2 cut(s)	169, 371
MboII	GAAGA	4 cut(s)	22, 75, 587, 677
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	3 cut(s)	17, 42, 226
MluCI	AATT	5 cut(s)	415, 517, 642, 647, 724
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	7 cut(s)	84, 125, 145, 167, 307, 573, 661
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	5 cut(s)	147, 461, 645, 650, 751
MslI	CAYNNNNRTG	1 cut(s)	469
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	324, 398
MvaI	CCWGG	2 cut(s)	324, 398
MwoI	GCNNNNNNNGC	2 cut(s)	443, 683
NdeII	GATC	2 cut(s)	169, 371
NlaIII	CATG	3 cut(s)	317, 474, 681
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	679
PagI	TCATGA	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	5
PflMI	CCANNNNNTGG	2 cut(s)	473, 500
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	367
Psp124BI	GAGCTC	2 cut(s)	17, 42
Psp6I	CCWGG	2 cut(s)	322, 396
PspCI	CACGTG	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	322, 396
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	410, 734
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	2 cut(s)	239, 595
RsaNI	GTAC	2 cut(s)	238, 594
RseI	CAYNNNNRTG	1 cut(s)	469
SacI	GAGCTC	2 cut(s)	17, 42
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	5 cut(s)	147, 461, 645, 650, 751
Sau3AI	GATC	2 cut(s)	169, 371
Sau96I	GGNCC	2 cut(s)	410, 734
ScrFI	CCNGG	2 cut(s)	324, 398
SduI	GDGCHC	3 cut(s)	17, 42, 226
SfaNI	GCATC	2 cut(s)	109, 568
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	415, 517, 642, 647, 724
SsiI	CCGC	1 cut(s)	308
SstI	GAGCTC	2 cut(s)	17, 42
StyD4I	CCNGG	2 cut(s)	322, 396
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	52, 334, 605
TaiI	ACGT	2 cut(s)	239, 369
TaqI	TCGA	3 cut(s)	17, 117, 172
TasI	AATT	5 cut(s)	415, 517, 642, 647, 724
Tru1I	TTAA	5 cut(s)	147, 461, 645, 650, 751
Tru9I	TTAA	5 cut(s)	147, 461, 645, 650, 751
TseFI	GTSAC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	267, 302
TspGWI	ACGGA	2 cut(s)	95, 654
Van91I	CCANNNNNTGG	2 cut(s)	473, 500
VpaK11BI	GGWCC	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.