Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

4726537 .. 4728632

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGAGGCAGAGCTCCAAAGTCGAGGCTATCTATGAGCTCTGCAAAAAGACCTTTTCGCCCTCCGGGTCTCCTCCCCCTTCTGCTGAAGCTGTCAGCAAGCTTTCTTCTCTTTTGGACGCAATCCATCCTGCTGATGTTGGACTTACAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTAAATTTATATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCCTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACGATTGGGTGGAGCCTTCTCAGGAAAGCGAGGGATCAAATTACTTTCCAGTAAGATTGGCAAAGCTGGCAGCTGACAAAGTTGTAACGGCACCATGTGGGACATCAGTTTTGTACCCAAAGAGTGGGGGGAATCTGCATTCTTTCACTGCAGTCACCCCGTGCGCTGTTCTTGACATTCTCACTCCACCTTACAGAGAAGATTTGGGCAGAAAATGCACATACTATCGTGACTACCCATATACTGCCTTCCAAATTAAGGTAGAGGAGGAAAAAGAAGAGGAATATGCATGGCTTGGTGAGACCGAACCTAATATCTACATGCGAGAGGGAAACTACACTGGACCGACTATTCAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

244

Amino Acids

27.35

Weight (kDa)

5.0

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	38 - 242	2e-73	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	497
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	108
AdeI	CACNNNGTG	2 cut(s)	470, 534
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	497, 631
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	7 cut(s)	15, 40, 92, 103, 371, 439, 446
AluI	AGCT	7 cut(s)	15, 40, 92, 103, 371, 439, 446
Alw21I	GWGCWC	2 cut(s)	17, 42
Alw26I	GTCTC	3 cut(s)	75, 186, 668
AlwI	GGATC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	716
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	266, 308, 520, 683
AvaII	GGWCC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	17, 42
Bbv12I	GWGCWC	2 cut(s)	17, 42
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	135, 210
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	75, 186, 668
BfmI	CTRYAG	1 cut(s)	522
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	67, 321
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	2 cut(s)	387, 465
BmrFI	CCNGG	2 cut(s)	67, 321
BpuMI	CCSGG	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	75, 668
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 631
Bse1I	ACTGG	2 cut(s)	422, 718
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	497, 631
BseMII	CTCAG	2 cut(s)	309, 407
BseNI	ACTGG	2 cut(s)	422, 718
BseRI	GAGGAG	2 cut(s)	63, 653
BseXI	GCAGC	1 cut(s)	455
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	17, 42
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	497, 631
BsmAI	GTCTC	3 cut(s)	75, 186, 668
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	511
Bso31I	GGTCTC	2 cut(s)	75, 668
Bsp1286I	GDGCHC	2 cut(s)	17, 42
Bsp143I	GATC	4 cut(s)	169, 313, 407, 729
BspCNI	CTCAG	2 cut(s)	308, 406
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	387, 465
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	75, 668
BsrI	ACTGG	2 cut(s)	422, 718
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	169, 313, 407, 729
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	101, 441
BstDEI	CTNAG	2 cut(s)	295, 393
BstF5I	GGATG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	4 cut(s)	172, 316, 410, 732
BstMAI	GTCTC	3 cut(s)	75, 186, 668
BstMBI	GATC	4 cut(s)	169, 313, 407, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 588
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	365, 697
BstSCI	CCNGG	2 cut(s)	65, 319
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	519, 711
Cac8I	GCNNGC	2 cut(s)	101, 441
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	716
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	6 cut(s)	311, 325, 362, 468, 663, 694
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	295, 393
DpnI	GATC	4 cut(s)	171, 315, 409, 731
DpnII	GATC	4 cut(s)	169, 313, 407, 729
DraIII	CACNNNGTG	2 cut(s)	470, 534
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	2 cut(s)	15, 40
Eco24I	GRGCYC	2 cut(s)	17, 42
Eco31I	GGTCTC	2 cut(s)	75, 668
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	2 cut(s)	15, 40
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	2 cut(s)	15, 40
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	664
EcoT38I	GRGCYC	2 cut(s)	17, 42
FaeI	CATG	6 cut(s)	314, 328, 365, 471, 666, 697
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	6 cut(s)	310, 324, 361, 467, 662, 693
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	2 cut(s)	17, 42
Fsp4HI	GCNGC	1 cut(s)	444
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	1 cut(s)	444
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	6 cut(s)	314, 328, 365, 471, 666, 697
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	220, 505
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	4 cut(s)	266, 308, 520, 683
Hpy188I	TCNGA	2 cut(s)	191, 729
Hpy188III	TCNNGA	6 cut(s)	161, 213, 311, 395, 545, 602
HpyAV	CCTTC	4 cut(s)	90, 245, 399, 631
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	6 cut(s)	45, 361, 511, 524, 591, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 588
HpyF3I	CTNAG	2 cut(s)	295, 393
Hsp92II	CATG	6 cut(s)	314, 328, 365, 471, 666, 697
HspAI	GCGC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	169, 313, 407, 729
LmnI	GCTCC	2 cut(s)	20, 385
LpnPI	CCDG	9 cut(s)	79, 144, 174, 306, 333, 380, 425, 435, 699
Lsp1109I	GCAGC	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	457, 526, 602
MalI	GATC	4 cut(s)	171, 315, 409, 731
MboI	GATC	4 cut(s)	169, 313, 407, 729
MboII	GAAGA	3 cut(s)	99, 584, 662
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	2 cut(s)	17, 42
MluCI	AATT	3 cut(s)	241, 412, 627
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	664
MseI	TTAA	2 cut(s)	239, 630
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 321
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	440, 588
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	169, 313, 407, 729
NlaIII	CATG	6 cut(s)	314, 328, 365, 471, 666, 697
NlaIV	GGNNCC	2 cut(s)	387, 465
NmuCI	GTSAC	2 cut(s)	526, 602
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	2 cut(s)	365, 697
PagI	TCATGA	1 cut(s)	310
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	505
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	2 cut(s)	17, 42
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	387, 465
PspPI	GGNCC	1 cut(s)	716
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SacI	GAGCTC	2 cut(s)	17, 42
SaqAI	TTAA	2 cut(s)	239, 630
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	169, 313, 407, 729
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	67, 321
SduI	GDGCHC	2 cut(s)	17, 42
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	716
Sse9I	AATT	3 cut(s)	241, 412, 627
SstI	GAGCTC	2 cut(s)	17, 42
StyD4I	CCNGG	2 cut(s)	65, 319
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	24, 172, 214
TaqII	GACCGA	2 cut(s)	692, 733
TasI	AATT	3 cut(s)	241, 412, 627
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	2 cut(s)	239, 630
Tru9I	TTAA	2 cut(s)	239, 630
TscAI	CASTG	2 cut(s)	526, 718
TseFI	GTSAC	2 cut(s)	526, 602
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	526, 602
TspDTI	ATGAA	2 cut(s)	264, 299
TspRI	CASTG	2 cut(s)	526, 718
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	2 cut(s)	365, 697
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.