Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012221.1

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

12339 .. 13773

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012221.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggcgaggcagagctccaaagtcgaggctatctatgaactctgcaaaaagaccttttcgccctccgggtctcctcccccttctgctgaagctgtcagcaagctttcttctcttttgggtattaccctgttcgttttagctgtcattccacttcatgatcaccctggcatgactgtttttagcaaagttctgtatggttctttgcatgtgagagcttacgattgggtggagccttctcaggaaagcaagggatcaaattactttccagtaagattggcaaagctggcagctgacaaagttgtaacagcaccatgtgggacatcagttttgtacccaaagagtggggggaatctgcattctttcactgcagtcaccccgtgcgctgttcttgacattctcactccaccttacagagaagatttgggcagaaaatgcacatactattgtgactacccatatactgccttccgtaagaccaatgcagtaagattggcaaagctggcagctgacaaagttgtaacggcaccatgtgggacatcagttttgtacccaaacagtggggggaatctgcattctttcactgcagtcaccccgtgcgctgttcttgacattctcactccaccttacagagaagatttgggcagaaaatgcacatactattgtgactacccatatactgccttccctacagaaattaaggtagaggaggaaaaagaagaggaatatgcatggcttggtgagaccgaacctaatatctacatgcgagagggaaactacactggaccgactattcagatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

266

Amino Acids

29.31

Weight (kDa)

6.52

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AccB7I	CCANNNNNTGG	2 cut(s)	341, 557
AclWI	GGATC	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	108
AdeI	CACNNNGTG	4 cut(s)	314, 378, 530, 594
AfaI	GTAC	2 cut(s)	332, 548
AfiI	CCNNNNNNNGG	2 cut(s)	341, 557
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	9 cut(s)	15, 92, 103, 140, 215, 283, 290, 499, 506
AluI	AGCT	9 cut(s)	15, 92, 103, 140, 215, 283, 290, 499, 506
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	75, 734
AlwI	GGATC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	287, 503
ArsI	GACNNNNNNTTYG	4 cut(s)	310, 342, 526, 558
AspLEI	GCGC	2 cut(s)	383, 599
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	152, 364, 580, 749
AvaII	GGWCC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	299, 515
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	75, 734
BfmI	CTRYAG	3 cut(s)	366, 582, 687
BglII	AGATCT	1 cut(s)	795
BisI	GCNGC	2 cut(s)	288, 504
BlsI	GCNGC	2 cut(s)	289, 505
Bme1390I	CCNGG	2 cut(s)	67, 165
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	2 cut(s)	231, 525
BmrFI	CCNGG	2 cut(s)	67, 165
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	2 cut(s)	75, 734
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 557
Bse1I	ACTGG	2 cut(s)	266, 784
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	341, 557
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	266, 784
BseRI	GAGGAG	2 cut(s)	63, 719
BseXI	GCAGC	2 cut(s)	299, 515
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	331, 547
BslI	CCNNNNNNNGG	2 cut(s)	341, 557
BsmAI	GTCTC	2 cut(s)	75, 734
BsmFI	GGGAC	2 cut(s)	331, 547
BsmI	GAATGC	2 cut(s)	355, 571
Bso31I	GGTCTC	2 cut(s)	75, 734
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	157, 251, 795
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	231, 525
BspMAI	CTGCAG	2 cut(s)	370, 586
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	523
BspTNI	GGTCTC	2 cut(s)	75, 734
BsrI	ACTGG	2 cut(s)	266, 784
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	157, 251, 795
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	175, 557
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	2 cut(s)	432, 648
BstC8I	GCNNGC	3 cut(s)	101, 285, 501
BstDEI	CTNAG	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	383, 599
BstKTI	GATC	3 cut(s)	160, 254, 798
BstMAI	GTCTC	2 cut(s)	75, 734
BstMBI	GATC	3 cut(s)	157, 251, 795
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 432, 500, 648
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	2 cut(s)	209, 763
BstSCI	CCNGG	2 cut(s)	65, 163
BstSFI	CTRYAG	3 cut(s)	366, 582, 687
BstV1I	GCAGC	2 cut(s)	299, 515
BstX2I	RGATCY	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	795
BtsI	GCAGTG	2 cut(s)	363, 579
BtsIMutI	CAGTG	4 cut(s)	363, 562, 579, 777
Cac8I	GCNNGC	3 cut(s)	101, 285, 501
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	383, 599
Cfr13I	GGNCC	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	331, 547
CviAII	CATG	7 cut(s)	155, 169, 206, 312, 528, 729, 760
CviQI	GTAC	2 cut(s)	331, 547
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	159, 253, 797
DpnII	GATC	3 cut(s)	157, 251, 795
DraIII	CACNNNGTG	4 cut(s)	314, 378, 530, 594
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	2 cut(s)	75, 734
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	7 cut(s)	158, 172, 209, 315, 531, 732, 763
FaqI	GGGAC	2 cut(s)	331, 547
FatI	CATG	7 cut(s)	154, 168, 205, 311, 527, 728, 759
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	288, 504
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	288, 504
GlaI	GCGC	2 cut(s)	382, 598
GluI	GCNGC	2 cut(s)	288, 504
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	2 cut(s)	383, 599
Hin1II	CATG	7 cut(s)	158, 172, 209, 315, 531, 732, 763
Hin6I	GCGC	2 cut(s)	381, 597
HinP1I	GCGC	2 cut(s)	381, 597
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	349, 565
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	4 cut(s)	152, 364, 580, 749
Hpy188I	TCNGA	1 cut(s)	795
Hpy188III	TCNNGA	4 cut(s)	155, 239, 389, 605
HpyAV	CCTTC	4 cut(s)	90, 243, 475, 691
HpyCH4III	ACNGT	2 cut(s)	175, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 432, 500, 648
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	158, 172, 209, 315, 531, 732, 763
HspAI	GCGC	2 cut(s)	381, 597
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	157, 251, 795
LmnI	GCTCC	2 cut(s)	20, 229
LpnPI	CCDG	9 cut(s)	79, 140, 150, 177, 224, 269, 279, 485, 765
Lsp1109I	GCAGC	2 cut(s)	299, 515
MaeIII	GTNAC	6 cut(s)	301, 370, 446, 517, 586, 662
MalI	GATC	3 cut(s)	159, 253, 797
MboI	GATC	3 cut(s)	157, 251, 795
MboII	GAAGA	4 cut(s)	99, 428, 644, 728
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	256, 693
MnlI	CCTC	7 cut(s)	19, 73, 84, 697, 700, 712, 760
Mph1103I	ATGCAT	1 cut(s)	730
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	2 cut(s)	290, 506
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 165
Mva1269I	GAATGC	2 cut(s)	355, 571
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	284, 432, 500, 648
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	157, 251, 795
NlaIII	CATG	7 cut(s)	158, 172, 209, 315, 531, 732, 763
NlaIV	GGNNCC	2 cut(s)	231, 525
NmuCI	GTSAC	4 cut(s)	370, 446, 586, 662
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	2 cut(s)	209, 763
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	2 cut(s)	355, 571
PfeI	GAWTC	2 cut(s)	349, 565
PflMI	CCANNNNNTGG	2 cut(s)	341, 557
PkrI	GCNGC	2 cut(s)	289, 505
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	231, 525
PspPI	GGNCC	1 cut(s)	782
PstI	CTGCAG	2 cut(s)	370, 586
PsuI	RGATCY	1 cut(s)	795
PvuII	CAGCTG	2 cut(s)	290, 506
RsaI	GTAC	2 cut(s)	332, 548
RsaNI	GTAC	2 cut(s)	331, 547
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	2 cut(s)	288, 504
Sau3AI	GATC	3 cut(s)	157, 251, 795
Sau96I	GGNCC	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	67, 165
SduI	GDGCHC	1 cut(s)	17
SfcI	CTRYAG	3 cut(s)	366, 582, 687
SinI	GGWCC	1 cut(s)	782
Sse9I	AATT	2 cut(s)	256, 693
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	65, 163
TaaI	ACNGT	2 cut(s)	175, 557
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	2 cut(s)	758, 799
TasI	AATT	2 cut(s)	256, 693
TfiI	GAWTC	2 cut(s)	349, 565
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	4 cut(s)	370, 562, 586, 784
TseFI	GTSAC	4 cut(s)	370, 446, 586, 662
TseI	GCWGC	2 cut(s)	287, 503
Tsp45I	GTSAC	4 cut(s)	370, 446, 586, 662
TspDTI	ATGAA	2 cut(s)	51, 143
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	4 cut(s)	370, 562, 586, 784
Van91I	CCANNNNNTGG	2 cut(s)	341, 557
VpaK11BI	GGWCC	1 cut(s)	782
XceI	RCATGY	2 cut(s)	209, 763
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.