Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Reverse (-)

62570830 .. 62572811

Gene Structure 1982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTACAAAAAGCTAGCGATAAGTTTCGGGTGTTTTTAGAGAAGAGAGTGCATTTCGGTGTGTCTCGGAGGCAAACAAGCATGGCGAGGCAGAGCTCCAAAGTCGAGGCTATCTATGAACTCTGCAAAAAGACCTTTTCGCCCTCCGGGTCTCCTCCCCCTTCTGCTGAAGCTGTCAACAAGCTTTCTTCTCTTTTGGACGCAATCCATCCTGCTGATGTTGGACTTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTAAATTTATATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCCTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACGATTGGGTGGAGCCTTCCCAGGAAAGCAAGGGATCAAATTACTTTCCAGTAAGATTGGCAAAGCTGACAGCAGACAAAGTTGTAACGGCACCATGTGGGACATCAGTTTTGTACCCAAAGAGTGGGGGAATCTGCATTCTTTCACTGCAGTCACCCCGTGCGCTGTTCTTGACATTCTCACTCCACCTTACAGAGAAGATTTGGGCAGAAAATGCACATACTATCGTGACTACCCATATACTGCCTTCCGTAAGGAACTTTCATTTCTTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

243

Amino Acids

27.27

Weight (kDa)

8.94

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	65 - 196	7.2e-44	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	544
AccB7I	CCANNNNNTGG	1 cut(s)	578
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	189
AdeI	CACNNNGTG	2 cut(s)	551, 614
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	400, 474
AluBI	AGCT	6 cut(s)	14, 96, 173, 184, 452, 520
AluI	AGCT	6 cut(s)	14, 96, 173, 184, 452, 520
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	3 cut(s)	69, 156, 267
AlwI	GGATC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AspLEI	GCGC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	347, 389, 600
AsuNHI	GCTAGC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	98
BccI	CCATC	2 cut(s)	216, 291
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	2 cut(s)	402, 476
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	69, 156, 267
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	602
Bme1390I	CCNGG	3 cut(s)	148, 402, 476
BmiI	GGNNCC	2 cut(s)	468, 546
BmrFI	CCNGG	3 cut(s)	148, 402, 476
BmtI	GCTAGC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	400, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	402, 476
BseDI	CCNNGG	2 cut(s)	400, 474
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	3 cut(s)	69, 156, 267
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	591
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	250, 394, 488
BspCNI	CTCAG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	468, 546
BspMAI	CTGCAG	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	544
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	400, 474
BssMI	GATC	3 cut(s)	250, 394, 488
Bst2UI	CCWGG	2 cut(s)	402, 476
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	3 cut(s)	253, 397, 491
BstMAI	GTCTC	3 cut(s)	69, 156, 267
BstMBI	GATC	3 cut(s)	250, 394, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	2 cut(s)	402, 476
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	146, 400, 474
BstSFI	CTRYAG	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	619
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	82, 392, 406, 443, 549
CviJI	RGCY	9 cut(s)	14, 96, 110, 173, 184, 259, 452, 469, 520
CviKI_1	RGCY	9 cut(s)	14, 96, 110, 173, 184, 259, 452, 469, 520
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	3 cut(s)	252, 396, 490
DpnII	GATC	3 cut(s)	250, 394, 488
DraIII	CACNNNGTG	2 cut(s)	551, 614
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	400, 474
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	5 cut(s)	85, 395, 409, 446, 552
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	5 cut(s)	81, 391, 405, 442, 548
FbaI	TGATCA	1 cut(s)	394
FokI	GGATG	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	618
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	5 cut(s)	85, 395, 409, 446, 552
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	301, 585
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	347, 389, 600
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	69, 272
Hpy188III	TCNNGA	5 cut(s)	242, 294, 392, 625, 682
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	171, 326, 480, 711
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	52, 126, 442, 591, 604, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	1 cut(s)	376
Hsp92II	CATG	5 cut(s)	85, 395, 409, 446, 552
HspAI	GCGC	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	250, 394, 488
LmnI	GCTCC	2 cut(s)	101, 466
LpnPI	CCDG	8 cut(s)	160, 225, 255, 387, 414, 461, 488, 516
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	4 cut(s)	3, 538, 606, 682
MalI	GATC	3 cut(s)	252, 396, 490
MboI	GATC	3 cut(s)	250, 394, 488
MboII	GAAGA	3 cut(s)	55, 180, 664
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	2 cut(s)	322, 493
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	63, 81, 100, 154, 165, 226, 248, 385
MseI	TTAA	2 cut(s)	228, 320
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	148, 402, 476
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	402, 476
MwoI	GCNNNNNNNGC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	250, 394, 488
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	5 cut(s)	85, 395, 409, 446, 552
NlaIV	GGNNCC	2 cut(s)	468, 546
NmuCI	GTSAC	2 cut(s)	606, 682
NspI	RCATGY	1 cut(s)	446
PagI	TCATGA	1 cut(s)	391
PctI	GAATGC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	578
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	400, 474
PspGI	CCWGG	2 cut(s)	400, 474
PspN4I	GGNNCC	2 cut(s)	468, 546
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	228, 320
Sau3AI	GATC	3 cut(s)	250, 394, 488
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	3 cut(s)	148, 402, 476
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	9 cut(s)	16, 98, 137, 175, 186, 337, 454, 522, 645
SfcI	CTRYAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	322, 493
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	146, 400, 474
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	105, 253, 295
TasI	AATT	2 cut(s)	322, 493
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	2 cut(s)	228, 320
Tru9I	TTAA	2 cut(s)	228, 320
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	606, 682
Tsp45I	GTSAC	2 cut(s)	606, 682
TspDTI	ATGAA	4 cut(s)	132, 345, 380, 707
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	1 cut(s)	606
Van91I	CCANNNNNTGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.