Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Reverse (-)

5908254 .. 5909256

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG082300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCGAGGCAGAGCTCCAAAGTCGAGGCTATCTATGAACTCTGCAAAAAGACCTTTTCGCCCTCCGGGTCTCCTCCCCCTTCTGCTGAAGCTGTCAGCAAGCTTTCTTCTCTTTTGGACGCAATCCATCCTGCTGATGTTGGACTTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTAAATTTATATGAGGGTGATAGTTTTACGGTAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

4.99

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	38 - 92	4.3e-06	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	15, 92, 103
AluI	AGCT	3 cut(s)	15, 92, 103
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	75, 186
ApoI	RAATTY	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	2 cut(s)	135, 210
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	75, 186
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	168
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	75, 186
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	75
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	75, 186
BstMBI	GATC	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	101
CseI	GACGC	1 cut(s)	128
CviJI	RGCY	5 cut(s)	15, 29, 92, 103, 178
CviKI_1	RGCY	5 cut(s)	15, 29, 92, 103, 178
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	17
FaiI	YATR	4 cut(s)	36, 235, 247, 249
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	17
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	161, 213
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	79, 144, 174
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	19, 73, 84, 145, 167, 244
MseI	TTAA	2 cut(s)	147, 239
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	67
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	147, 239
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	4 cut(s)	17, 56, 94, 105
Sse9I	AATT	1 cut(s)	241
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	24, 172, 214
TasI	AATT	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	147, 239
Tru9I	TTAA	2 cut(s)	147, 239
TspDTI	ATGAA	1 cut(s)	51
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.