Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

5035418 .. 5036842

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG065000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGAGGCAGAGCTCCAAAGTCGAGGCTATCTATGAACTCTGCAAAAAGACCTTTTCGCCCTCCGGGTCTCCTCCCCCTTCTGCTGAAGCTGTCAGCAAGCTTTCTTCTCTTTTGGACGCAATCCATCCTGCTGATGTTGGACTTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGATTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTAAATTTATATGAAGGTGATAGTTTTACGTCATTCCACTTCATGATCACCCTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

5.23

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	38 - 95	9e-06	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	15, 92, 103
AluI	AGCT	3 cut(s)	15, 92, 103
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	75, 186
ApoI	RAATTY	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	266, 277
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	2 cut(s)	135, 210
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	75, 186
Bme1390I	CCNGG	2 cut(s)	67, 290
BmrFI	CCNGG	2 cut(s)	67, 290
BpuMI	CCSGG	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	75, 186
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	169, 282
BspHI	TCATGA	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	169, 282
Bst2UI	CCWGG	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	172, 285
BstMAI	GTCTC	2 cut(s)	75, 186
BstMBI	GATC	2 cut(s)	169, 282
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	65, 288
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	101
CciI	TCATGA	1 cut(s)	279
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	280, 294
CviJI	RGCY	5 cut(s)	15, 29, 92, 103, 178
CviKI_1	RGCY	5 cut(s)	15, 29, 92, 103, 178
DpnI	GATC	2 cut(s)	171, 284
DpnII	GATC	2 cut(s)	169, 282
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	283, 297
FaiI	YATR	6 cut(s)	36, 235, 247, 249, 281, 295
FatI	CATG	2 cut(s)	279, 293
FbaI	TGATCA	1 cut(s)	282
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	17
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	283, 297
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	266, 277
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	161, 213, 280
HpyAV	CCTTC	2 cut(s)	90, 245
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	283, 297
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	169, 282
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	79, 144, 174, 275
MaeII	ACGT	1 cut(s)	266
MalI	GATC	2 cut(s)	171, 284
MboI	GATC	2 cut(s)	169, 282
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	19, 73, 84, 145, 167
MseI	TTAA	2 cut(s)	147, 239
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 290
MvaI	CCWGG	1 cut(s)	290
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	169, 282
NlaIII	CATG	2 cut(s)	283, 297
PagI	TCATGA	1 cut(s)	279
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	147, 239
Sau3AI	GATC	2 cut(s)	169, 282
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	67, 290
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	17, 56, 94, 105, 256, 269
Sse9I	AATT	1 cut(s)	241
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	65, 288
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	3 cut(s)	24, 172, 214
TasI	AATT	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	147, 239
Tru9I	TTAA	2 cut(s)	147, 239
TspDTI	ATGAA	3 cut(s)	51, 264, 268
XapI	RAATTY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.