Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009768

Physical Location & Seq

Genomic Coordinates Forward (+)

22291549 .. 22293953

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGAAGAATTAGGTGGAAAGGATCCGGAAATTATCTATTTTCGCGAAAGACCCCTACATTCGTACATTCTGCAACACAAACTTTTCTCGCTCCCAAATTTTCTGTAATTCGTGAGTGGCCACCAGAACGTTTCCAAAATTTCAGAAAGCTACATATAAGATGCGGACGTTTTTACAAAAACGGACCCAATTTTACTGCGTTTCGAAGCCACACAAGCATGGCGAGGAAGAGCTCGAAAGTTCAGGCTCTCTACGAGCTCTGCCAGACGGTATTCACGCCGTCAGGGTGTCCTCCCCCTTCTTCTCCGGCTATCAATAAGCTCCGTTCTGTCCTCGATGCGATGTCTCCTACTGATGTTGGGCTTAAAGAGGAAAATCAGGATGATGATGGAGGGCTTGGTTTTGTTGGACTTGACCAACTAAAAAGAGTTTCTCGGTGGGCTCAACCAATAACGTACTTGGATATGTATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTTATTCCGCTTCATGACCATCCTGGAATGACTGTTTTTAGCAAAGTTCTTTATGGCTCTTTGCACGTGAGATCTTATGATTGGGTTGAGCCTGCCCAGGAGATCAAGGGACCAAATTACTTTCCAGGTTTCATGCGAGATATACAACCGTATGCGATGCTCATGATTTTCATACTTCAAGGGCTTAAATACGGGAGAACTAATGAGATTATGAAATTGCTCTCCAATGTAGTAAGATTGGCGAAGCTGGCAGTTGACAAGGTTTTAACAGCACCATGTGGGACATCAGTTTTGTATCCAAGGAGTGGGGGCAATCTGCATAATTTCACGGCGGTCACTCCTTGTGCTGTTCTTGACATTCTCACTCCTCCTTACAGAGAAGATGCAGGCAGAAAATGTACCTACTACCGTGACTACCCGTATACTGCCTTTGCTACAGAAAACGGAATTAAAATAAGGGATGGTAGAGAAGAGGACTATGCATGGCTTGCTGAGACAGAACCAGATAATCTTTATATGCGCTTGGGAAATTACACAGGGCCGTCTATTCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

359

Amino Acids

40.72

Weight (kDa)

9.13

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	111 - 356	1.2e-68	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18490
fragaria_vesca	FvH4_5g13010
malus_domestica	MD06G1208200.v1.1 MD14G1218600.v1.1
prunus_persica	Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1 Prupe.5G212700_v2.0.a1
pyrus_communis	pycom06g18600 pycom14g18120
rosa_chinensis	RchiOBHm_Chr7g0184171
rosa_laevigata	RLG00000004997
rosa_multiflora	Rmu_sc0012221.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269830
rosa_rugosa	Rorug06G0463600
rosa_samantha	Rh7AG082300 Rh7BG064900 Rh7CG065300 Rh7DG065000
rosa_wichuraiana	Rw7G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	941
AccII	CGCG	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	3 cut(s)	165, 527, 851
AclI	AACGTT	1 cut(s)	130
AclWI	GGATC	2 cut(s)	18, 31
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	98, 139
AcvI	CACGTG	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	66, 458, 919
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgsI	TTSAA	1 cut(s)	698
AjnI	CCWGG	3 cut(s)	541, 615, 643
AluBI	AGCT	5 cut(s)	151, 234, 259, 322, 766
AluI	AGCT	5 cut(s)	151, 234, 259, 322, 766
Alw21I	GWGCWC	2 cut(s)	236, 261
Alw26I	GTCTC	2 cut(s)	351, 1007
AlwI	GGATC	2 cut(s)	18, 31
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	2 cut(s)	119, 1058
ApoI	RAATTY	2 cut(s)	98, 139
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	3 cut(s)	185, 629, 1058
AsuHPI	GGTGA	1 cut(s)	488
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	185, 629
BalI	TGGCCA	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	23
BanII	GRGCYC	3 cut(s)	236, 261, 445
BbrPI	CACGTG	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	236, 261
BccI	CCATC	3 cut(s)	383, 546, 974
BceAI	ACGGC	3 cut(s)	265, 864, 1045
BciT130I	CCWGG	3 cut(s)	543, 617, 645
BciVI	GTATCC	1 cut(s)	825
BcoDI	GTCTC	2 cut(s)	351, 1007
BfmI	CTRYAG	1 cut(s)	954
BfuI	GTATCC	1 cut(s)	825
BglII	AGATCT	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	543, 617, 645
Bme18I	GGWCC	2 cut(s)	185, 629
BmgT120I	GGNCC	3 cut(s)	185, 629, 1058
BmiI	GGNNCC	3 cut(s)	25, 187, 630
BmrFI	CCNGG	3 cut(s)	543, 617, 645
BmsI	GCATC	4 cut(s)	152, 328, 666, 892
Bpu14I	TTCGAA	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	2 cut(s)	615, 818
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	3 cut(s)	543, 617, 645
BseDI	CCNNGG	2 cut(s)	615, 818
BseGI	GGATG	3 cut(s)	388, 538, 985
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMII	CTCAG	2 cut(s)	531, 1002
BseRI	GAGGAG	1 cut(s)	876
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	121, 1060
BsiHKAI	GWGCWC	2 cut(s)	236, 261
BsiSI	CCGG	2 cut(s)	27, 308
BslFI	GGGAC	2 cut(s)	642, 814
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	351, 1007
BsmFI	GGGAC	2 cut(s)	642, 814
BsnI	GGCC	2 cut(s)	121, 1060
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	236, 261, 445
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	23, 590, 621
Bsp68I	TCGCGA	1 cut(s)	46
BspACI	CCGC	3 cut(s)	165, 527, 851
BspANI	GGCC	2 cut(s)	121, 1060
BspCNI	CTCAG	2 cut(s)	530, 1003
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	2 cut(s)	532, 681
BspLI	GGNNCC	3 cut(s)	25, 187, 630
BspPI	GGATC	2 cut(s)	18, 31
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	615, 818
BssMI	GATC	3 cut(s)	23, 590, 621
BssNAI	GTATAC	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	818
Bst1107I	GTATAC	1 cut(s)	942
Bst2UI	CCWGG	3 cut(s)	543, 617, 645
Bst4CI	ACNGT	4 cut(s)	271, 553, 669, 929
Bst6I	CTCTTC	2 cut(s)	224, 984
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	4 cut(s)	612, 768, 907, 1008
BstDEI	CTNAG	2 cut(s)	517, 1011
BstF5I	GGATG	3 cut(s)	388, 538, 985
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	3 cut(s)	26, 593, 624
BstMAI	GTCTC	2 cut(s)	351, 1007
BstMBI	GATC	3 cut(s)	23, 590, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 767, 1007
BstNI	CCWGG	3 cut(s)	543, 617, 645
BstSCI	CCNGG	3 cut(s)	541, 615, 643
BstSFI	CTRYAG	1 cut(s)	954
BstUI	CGCG	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	23, 590
BstYI	RGATCY	2 cut(s)	23, 590
BstZ17I	GTATAC	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	2 cut(s)	121, 1060
BtgZI	GCGATG	2 cut(s)	356, 689
BtsCI	GGATG	3 cut(s)	388, 538, 985
BtuMI	TCGCGA	1 cut(s)	46
Cac8I	GCNNGC	4 cut(s)	612, 768, 907, 1008
CciI	TCATGA	2 cut(s)	532, 681
CfoI	GCGC	1 cut(s)	1041
Cfr13I	GGNCC	3 cut(s)	185, 629, 1058
Csp6I	GTAC	3 cut(s)	65, 457, 918
CviAII	CATG	6 cut(s)	220, 533, 652, 682, 795, 1002
CviQI	GTAC	3 cut(s)	65, 457, 918
DdeI	CTNAG	2 cut(s)	517, 1011
DpnI	GATC	3 cut(s)	25, 592, 623
DpnII	GATC	3 cut(s)	23, 590, 621
DraIII	CACNNNGTG	1 cut(s)	797
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	224, 984
EarI	CTCTTC	2 cut(s)	224, 984
Ecl136II	GAGCTC	2 cut(s)	234, 259
Eco130I	CCWWGG	1 cut(s)	818
Eco24I	GRGCYC	3 cut(s)	236, 261, 445
Eco47I	GGWCC	2 cut(s)	185, 629
Eco53kI	GAGCTC	2 cut(s)	234, 259
Eco72I	CACGTG	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	234, 259
EcoRII	CCWGG	3 cut(s)	541, 615, 643
EcoT14I	CCWWGG	1 cut(s)	818
EcoT22I	ATGCAT	1 cut(s)	1003
EcoT38I	GRGCYC	3 cut(s)	236, 261, 445
ErhI	CCWWGG	1 cut(s)	818
FaeI	CATG	6 cut(s)	223, 536, 655, 685, 798, 1005
FaqI	GGGAC	2 cut(s)	642, 814
FatI	CATG	6 cut(s)	219, 532, 651, 681, 794, 1001
FblI	GTMKAC	1 cut(s)	941
FokI	GGATG	3 cut(s)	395, 525, 992
FriOI	GRGCYC	3 cut(s)	236, 261, 445
GlaI	GCGC	1 cut(s)	1040
HaeIII	GGCC	2 cut(s)	121, 1060
HapII	CCGG	2 cut(s)	27, 308
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	6 cut(s)	223, 536, 655, 685, 798, 1005
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HpaII	CCGG	2 cut(s)	27, 308
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	775, 942
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	7 cut(s)	27, 45, 113, 380, 533, 682, 872
Hpy8I	GTNNAC	2 cut(s)	775, 942
HpyAV	CCTTC	2 cut(s)	309, 467
HpyCH4III	ACNGT	4 cut(s)	271, 553, 669, 929
HpyCH4IV	ACGT	4 cut(s)	130, 169, 455, 585
HpyCH4V	TGCA	5 cut(s)	74, 583, 838, 905, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 767, 1007
HpyF3I	CTNAG	2 cut(s)	517, 1011
HpySE526I	ACGT	4 cut(s)	130, 169, 455, 585
Hsp92II	CATG	6 cut(s)	223, 536, 655, 685, 798, 1005
HspAI	GCGC	1 cut(s)	1039
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	23, 590, 621
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	97, 327
LweI	GCATC	4 cut(s)	152, 328, 666, 892
MaeII	ACGT	4 cut(s)	130, 169, 455, 585
MaeIII	GTNAC	2 cut(s)	853, 929
MalI	GATC	3 cut(s)	25, 592, 623
MboI	GATC	3 cut(s)	23, 590, 621
MboII	GAAGA	5 cut(s)	18, 241, 294, 911, 1001
MflI	RGATCY	2 cut(s)	23, 590
MhlI	GDGCHC	3 cut(s)	236, 261, 445
MlsI	TGGCCA	1 cut(s)	121
MluNI	TGGCCA	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	8 cut(s)	219, 303, 344, 364, 386, 526, 897, 985
Mox20I	TGGCCA	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	1003
MroI	TCCGGA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	5 cut(s)	366, 705, 785, 969, 1075
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	121
MspI	CCGG	2 cut(s)	27, 308
MspR9I	CCNGG	3 cut(s)	543, 617, 645
MvaI	CCWGG	3 cut(s)	543, 617, 645
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	216, 767, 1007
NdeII	GATC	3 cut(s)	23, 590, 621
NlaIII	CATG	6 cut(s)	223, 536, 655, 685, 798, 1005
NlaIV	GGNNCC	3 cut(s)	25, 187, 630
NmuCI	GTSAC	2 cut(s)	853, 929
NruI	TCGCGA	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	1003
NspV	TTCGAA	1 cut(s)	205
PagI	TCATGA	2 cut(s)	532, 681
PciSI	GCTCTTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	824
PfoI	TCCNGGA	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	586
Psp124BI	GAGCTC	2 cut(s)	236, 261
Psp1406I	AACGTT	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	541, 615, 643
PspCI	CACGTG	1 cut(s)	586
PspGI	CCWGG	3 cut(s)	541, 615, 643
PspN4I	GGNNCC	3 cut(s)	25, 187, 630
PspPI	GGNCC	3 cut(s)	185, 629, 1058
PsuI	RGATCY	2 cut(s)	23, 590
RruI	TCGCGA	1 cut(s)	46
RsaI	GTAC	3 cut(s)	66, 458, 919
RsaNI	GTAC	3 cut(s)	65, 457, 918
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	2 cut(s)	236, 261
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	5 cut(s)	366, 705, 785, 969, 1075
Sau3AI	GATC	3 cut(s)	23, 590, 621
Sau96I	GGNCC	3 cut(s)	185, 629, 1058
ScrFI	CCNGG	3 cut(s)	543, 617, 645
SduI	GDGCHC	3 cut(s)	236, 261, 445
SfaNI	GCATC	4 cut(s)	152, 328, 666, 892
SfcI	CTRYAG	1 cut(s)	954
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	2 cut(s)	185, 629
SmiMI	CAYNNNNRTG	1 cut(s)	218
SsiI	CCGC	3 cut(s)	165, 527, 851
SstI	GAGCTC	2 cut(s)	236, 261
StyD4I	CCNGG	3 cut(s)	541, 615, 643
StyI	CCWWGG	1 cut(s)	818
TaaI	ACNGT	4 cut(s)	271, 553, 669, 929
TaiI	ACGT	4 cut(s)	133, 172, 458, 588
TaqI	TCGA	3 cut(s)	205, 236, 336
Tru1I	TTAA	5 cut(s)	366, 705, 785, 969, 1075
Tru9I	TTAA	5 cut(s)	366, 705, 785, 969, 1075
TseFI	GTSAC	2 cut(s)	853, 929
Tsp45I	GTSAC	2 cut(s)	853, 929
TspDTI	ATGAA	5 cut(s)	486, 521, 640, 679, 746
TspGWI	ACGGA	3 cut(s)	198, 314, 978
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	185, 629
XapI	RAATTY	2 cut(s)	98, 139
XmiI	GTMKAC	1 cut(s)	941
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.