AT1G18790

RWP-RK domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012997
Physical Location & Seq
Reverse (-)
6478779 .. 6480043
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18790.1

Sequence Viewer

Length: 810 bp
ATGAAATCGTTTTGCAAGTTGGAGTATGATCAAGTGTTTGGCAAAGAAAATAATTCATTCTCATTTCTAAACCACTCATCACTTTACTCTCATCAAAGCGAGTTAGCAAATCCTTTCTTCGAGTTGGAAGACGAGATGCTTCCTTCTGCTACCTCTAGTAATTGTTTTACTTCTGCCTCAAGCTTTCTGGCTTTACCTGATCTTGAACCCATCTCCATTGTGTCTCATGAAGCAGATATACTTAGTGTGTATGGTTCTGCTTCATGGACCGCAGAAGAGACGATGTTCGTTTCTGATTTTGCGAAAAAGAGTGAAACCACAACTACCAAGAAGAGGAGATGCAGAGAAGAATGTTTTTCTAGTTGTTCTGTTTCAAAGACATTGTCGAAGGAAACCATCTCATTGTACTTTTACATGCCGATAACTCAAGCGGCTAGAGAGCTTAACATTGGTTTAACTCTTTTGAAGAAGAGATGCCGCGAATTGGGTATTAAACGTTGGCCTCATCGTAAGCTCATGAGCCTACAAAAACTCATCAGCAATGTCAAGGAGCTAGAGAAGATGGAAGGGGAAGAAAATGAAGATAAGCTAAGAAACGCTTTGGAAAAGCTCGAGAAGGAGAAGAAAACGATTGAGAAGTTACCAGATTTGAAGTTTGAGGATAAGACAAAGAGATTGAGACAAGCTTGTTTCAAGGCTAACCATAAGAGGAAGAGAAGAAGTGGCATGTCCACGCCCATCACATCATCATCTTCTTCTGCTTCTGCTTCTTCTTCTTCTTACTCTTCTGTTTCGGGTTTTGAGAGATAA

Protein Analysis

269

Amino Acids

30.64

Weight (kDa)

8.94

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 128 - 175 7.4e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18790 AT1G74480
fragaria_vesca FvH4_5g14910
malus_domestica MD06G1193600.v1.1
prunus_persica Prupe.5G193900_v2.0.a1
pyrus_communis pycom14g16650
rosa_chinensis RchiOBHm_Chr7g0181471
rosa_laevigata RLG00000005191
rosa_multiflora Rmu_sc0002060.1_g000022 Rmu_sc0002993.1_g000018 Rmu_sc0004621.1_g000024
rosa_roxburghii Rroxscaffold_3G00271970
rosa_rugosa Rorug06G0441600
rosa_samantha Rh7AG043400 Rh7BG042800 Rh7CG044600 Rh7DG043200
rosa_wichuraiana Rw7G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AciI CCGC 3 cut(s) 270, 431, 478
AclI AACGTT 1 cut(s) 496
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 333, 484
AgsI TTSAA 5 cut(s) 206, 375, 466, 652, 694
AluBI AGCT 7 cut(s) 183, 442, 514, 553, 589, 610, 686
AluI AGCT 7 cut(s) 183, 442, 514, 553, 589, 610, 686
Alw26I GTCTC 3 cut(s) 228, 272, 673
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 1 cut(s) 500
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AspS9I GGNCC 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 4 cut(s) 218, 404, 556, 746
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 228, 272, 673
BfaI CTAG 4 cut(s) 156, 360, 435, 554
BisI GCNGC 2 cut(s) 432, 478
BlsI GCNGC 2 cut(s) 433, 479
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 267
BmsI GCATC 3 cut(s) 126, 329, 464
BpiI GAAGAC 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 163, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 484
Bse3DI GCAATG 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 333, 484
BseMI GCAATG 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 333, 484
BsmAI GTCTC 3 cut(s) 228, 272, 673
BsmBI CGTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 502
BsoBI CYCGRG 1 cut(s) 611
Bsp143I GATC 2 cut(s) 28, 199
BspACI CCGC 3 cut(s) 270, 431, 478
BspANI GGCC 1 cut(s) 502
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 2 cut(s) 226, 516
BsrDI GCAATG 1 cut(s) 547
BssMI GATC 2 cut(s) 28, 199
Bst6I CTCTTC 5 cut(s) 270, 326, 464, 707, 790
BstDEI CTNAG 2 cut(s) 242, 590
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 2 cut(s) 31, 202
BstMAI GTCTC 3 cut(s) 228, 272, 673
BstMBI GATC 2 cut(s) 28, 199
BstNSI RCATGY 2 cut(s) 418, 730
BstUI CGCG 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 502
CciI TCATGA 2 cut(s) 226, 516
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 406
CviAII CATG 5 cut(s) 227, 264, 415, 517, 727
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 242, 590
DpnI GATC 2 cut(s) 30, 201
DpnII GATC 2 cut(s) 28, 199
Eam1104I CTCTTC 5 cut(s) 270, 326, 464, 707, 790
EarI CTCTTC 5 cut(s) 270, 326, 464, 707, 790
Eco47I GGWCC 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 611
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 5 cut(s) 230, 267, 418, 520, 730
FaiI YATR 9 cut(s) 27, 228, 239, 252, 265, 416, 518, 705, 728
FalI AAGNNNNNCTT 2 cut(s) 583, 615
FatI CATG 5 cut(s) 226, 263, 414, 516, 726
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 432, 478
Fsp4HI GCNGC 2 cut(s) 432, 478
FspBI CTAG 4 cut(s) 156, 360, 435, 554
GluI GCNGC 2 cut(s) 432, 478
HaeIII GGCC 1 cut(s) 502
Hin1II CATG 5 cut(s) 230, 267, 418, 520, 730
HindIII AAGCTT 2 cut(s) 181, 684
Hpy166II GTNNAC 1 cut(s) 732
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 4 cut(s) 203, 227, 517, 613
Hpy8I GTNNAC 1 cut(s) 732
HpyAV CCTTC 4 cut(s) 153, 382, 560, 610
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 2 cut(s) 15, 342
HpyF3I CTNAG 2 cut(s) 242, 590
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 5 cut(s) 230, 267, 418, 520, 730
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 2 cut(s) 28, 199
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 3 cut(s) 173, 210, 657
LweI GCATC 3 cut(s) 126, 329, 464
MaeI CTAG 4 cut(s) 156, 360, 435, 554
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 639
MalI GATC 2 cut(s) 30, 201
MboI GATC 2 cut(s) 28, 199
MluCI AATT 3 cut(s) 52, 160, 482
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 163, 187, 327, 513, 652, 702
MseI TTAA 3 cut(s) 444, 455, 492
MvnI CGCG 1 cut(s) 480
NdeII GATC 2 cut(s) 28, 199
NlaIII CATG 5 cut(s) 230, 267, 418, 520, 730
NspI RCATGY 2 cut(s) 418, 730
PaeR7I CTCGAG 1 cut(s) 611
PagI TCATGA 2 cut(s) 226, 516
PflFI GACNNNGTC 1 cut(s) 382
PkrI GCNGC 2 cut(s) 433, 479
Psp1406I AACGTT 1 cut(s) 496
PspPI GGNCC 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 382
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 3 cut(s) 444, 455, 492
SatI GCNGC 2 cut(s) 432, 478
Sau3AI GATC 2 cut(s) 28, 199
Sau96I GGNCC 1 cut(s) 267
SfaNI GCATC 3 cut(s) 126, 329, 464
Sfr274I CTCGAG 1 cut(s) 611
SinI GGWCC 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 611
SmlI CTYRAG 3 cut(s) 178, 426, 611
SmoI CTYRAG 3 cut(s) 178, 426, 611
Sse9I AATT 3 cut(s) 52, 160, 482
SsiI CCGC 3 cut(s) 270, 431, 478
SspMI CTAG 4 cut(s) 156, 360, 435, 554
TaiI ACGT 1 cut(s) 499
TaqI TCGA 3 cut(s) 120, 386, 612
TasI AATT 3 cut(s) 52, 160, 482
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 434, 480
Tru1I TTAA 3 cut(s) 444, 455, 492
Tru9I TTAA 3 cut(s) 444, 455, 492
TspDTI ATGAA 5 cut(s) 17, 45, 243, 252, 594
Tth111I GACNNNGTC 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 267
XceI RCATGY 2 cut(s) 418, 730
XhoI CTCGAG 1 cut(s) 611
XspI CTAG 4 cut(s) 156, 360, 435, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.