Rorug06G0441600

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012997
Physical Location & Seq
Forward (+)
57392366 .. 57393496
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0441600.1

Sequence Viewer

Length: 642 bp
ATGTCAAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCGGGTCCTCCGATCAGGCCCAACCTCTCTGCAAACCCCACCAGGTTTAGGGTCCCAGAAACCGAGCCGGATGTGGGACATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTGCGAATTGAGGGCTCTGGCTAAGATGGTCGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCGGTGGGGTCCGTAAATCAGTGAGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGAACAGGGGAGGAGTTTAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTGGAAAGCATGAGGAAATCAGTGTCTGCGGCCTACTCGGTGGAGAGGACAAGCCAGACGCCGAGGTATATGCTGAGGAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATCGGTGATAGGAACAGCATCTCGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

213

Amino Acids

23.83

Weight (kDa)

10.36

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18790 AT1G74480
fragaria_vesca FvH4_5g14910
malus_domestica MD06G1193600.v1.1
prunus_persica Prupe.5G193900_v2.0.a1
pyrus_communis pycom14g16650
rosa_chinensis RchiOBHm_Chr7g0181471
rosa_laevigata RLG00000005191
rosa_multiflora Rmu_sc0002060.1_g000022 Rmu_sc0002993.1_g000018 Rmu_sc0004621.1_g000024
rosa_roxburghii Rroxscaffold_3G00271970
rosa_rugosa Rorug06G0441600
rosa_samantha Rh7AG043400 Rh7BG042800 Rh7CG044600 Rh7DG043200
rosa_wichuraiana Rw7G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 7 cut(s) 22, 32, 62, 178, 366, 422, 488
AclWI GGATC 2 cut(s) 43, 168
AcoI YGGCCR 2 cut(s) 36, 167
AcsI RAATTY 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 116, 142
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 412, 460
AluI AGCT 2 cut(s) 412, 460
AlwI GGATC 2 cut(s) 43, 168
AlwNI CAGNNNCTG 2 cut(s) 412, 485
AoxI GGCC 5 cut(s) 36, 85, 167, 252, 489
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 6 cut(s) 19, 55, 73, 86, 120, 262
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 5 cut(s) 19, 55, 73, 120, 262
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 205
BbvCI CCTCAGC 2 cut(s) 350, 533
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 4 cut(s) 211, 245, 511, 545
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 2 cut(s) 333, 453
BisI GCNGC 1 cut(s) 489
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 5 cut(s) 19, 55, 73, 120, 262
BmgT120I GGNCC 6 cut(s) 19, 55, 73, 86, 120, 262
BmiI GGNNCC 6 cut(s) 56, 74, 121, 122, 156, 263
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 629
BmuI ACTGGG 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 311, 343
Bpu10I CCTNAGC 2 cut(s) 350, 533
Bpu1102I GCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 521
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 116, 142
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 3 cut(s) 15, 144, 241
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 116, 142
BseMII CTCAG 4 cut(s) 341, 524, 587, 611
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 3 cut(s) 398, 550, 555
BseYI CCCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 5 cut(s) 38, 87, 169, 254, 491
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 136, 158, 166, 255
BslFI GGGAC 4 cut(s) 28, 106, 158, 463
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 116, 142
BsmFI GGGAC 4 cut(s) 28, 106, 158, 463
BsnI GGCC 5 cut(s) 38, 87, 169, 254, 491
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 48, 80, 160
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 7 cut(s) 22, 32, 62, 178, 366, 422, 488
BspANI GGCC 5 cut(s) 38, 87, 169, 254, 491
BspCNI CTCAG 4 cut(s) 342, 525, 586, 610
BspLI GGNNCC 6 cut(s) 56, 74, 121, 122, 156, 263
BspPI GGATC 2 cut(s) 43, 168
BsrBI CCGCTC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 3 cut(s) 48, 80, 160
BssNI GRCGYC 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 622
BstACI GRCGYC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 5 cut(s) 210, 350, 533, 573, 597
BstF5I GGATG 3 cut(s) 15, 144, 241
BstKTI GATC 3 cut(s) 51, 83, 163
BstMBI GATC 3 cut(s) 48, 80, 160
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 5 cut(s) 38, 87, 169, 254, 491
BtsCI GGATG 3 cut(s) 15, 144, 241
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 279, 451, 486
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 2 cut(s) 412, 485
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 6 cut(s) 19, 55, 73, 86, 120, 262
CseI GACGC 1 cut(s) 526
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 148, 469
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 5 cut(s) 210, 350, 533, 573, 597
DpnI GATC 3 cut(s) 50, 82, 162
DpnII GATC 3 cut(s) 48, 80, 160
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 167
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EciI GGCGGA 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 5 cut(s) 19, 55, 73, 120, 262
EcoO109I RGGNCCY 2 cut(s) 73, 120
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 2 cut(s) 151, 472
FaiI YATR 7 cut(s) 149, 318, 363, 470, 528, 530, 542
FaqI GGGAC 4 cut(s) 28, 106, 158, 463
FatI CATG 2 cut(s) 147, 468
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 3 cut(s) 22, 151, 248
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 333, 453
GluI GCNGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 5 cut(s) 38, 87, 169, 254, 491
HapII CCGG 5 cut(s) 52, 136, 158, 166, 255
HgaI GACGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 2 cut(s) 151, 472
HinfI GANTC 2 cut(s) 312, 428
HpaII CCGG 5 cut(s) 52, 136, 158, 166, 255
HphI GGTGA 1 cut(s) 619
Hpy188I TCNGA 3 cut(s) 59, 80, 600
Hpy188III TCNNGA 1 cut(s) 624
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 210, 350, 533, 573, 597
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 2 cut(s) 151, 472
KflI GGGWCCC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 48, 80, 160
LmnI GCTCC 1 cut(s) 185
LweI GCATC 1 cut(s) 629
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 2 cut(s) 333, 453
MalI GATC 3 cut(s) 50, 82, 162
MbiI CCGCTC 1 cut(s) 180
MboI GATC 3 cut(s) 48, 80, 160
MboII GAAGA 4 cut(s) 251, 348, 367, 639
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 194, 227, 283
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 390, 402
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 136, 158, 166, 255
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 160
NlaIII CATG 2 cut(s) 151, 472
NlaIV GGNNCC 6 cut(s) 56, 74, 121, 122, 156, 263
NmeAIII GCCGAG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 2 cut(s) 73, 120
Psp5II RGGWCCY 2 cut(s) 73, 120
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 6 cut(s) 56, 74, 121, 122, 156, 263
PspPI GGNCC 6 cut(s) 19, 55, 73, 86, 120, 262
PspPPI RGGWCCY 2 cut(s) 73, 120
PstNI CAGNNNCTG 2 cut(s) 412, 485
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 390, 402
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 3 cut(s) 48, 80, 160
Sau96I GGNCC 6 cut(s) 19, 55, 73, 86, 120, 262
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 205
SetI ASST 5 cut(s) 95, 115, 414, 462, 527
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 1 cut(s) 629
SinI GGWCC 5 cut(s) 19, 55, 73, 120, 262
Sse9I AATT 3 cut(s) 194, 227, 283
SsiI CCGC 7 cut(s) 22, 32, 62, 178, 366, 422, 488
SspMI CTAG 2 cut(s) 333, 453
StyD4I CCNGG 2 cut(s) 51, 109
TaqI TCGA 1 cut(s) 625
TasI AATT 3 cut(s) 194, 227, 283
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 390, 402
Tru9I TTAA 2 cut(s) 390, 402
TscAI CASTG 3 cut(s) 279, 451, 486
TspDTI ATGAA 2 cut(s) 26, 252
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 279, 451, 486
VpaK11BI GGWCC 5 cut(s) 19, 55, 73, 120, 262
XapI RAATTY 1 cut(s) 227
XspI CTAG 2 cut(s) 333, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.