Rh7CG044600

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012997
Physical Location & Seq
Forward (+)
3004946 .. 3006336
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG044600.1

Sequence Viewer

Length: 1080 bp
ATGACAATGAAGAGTCACCATCAGAGTCGTTCCCTGACGAGTAACCCTAATTGGGTAGTTTCTAAGGATCCTGAAAACCCATTCTCATTCCCAAATCAATTTTCTCCTGCTGATTTCAGTGGGTATGCTCCGGTACTTGATTGGGAAAATGAATTTCCGCCGATGGTGCAAGACTACACTTTTATTGATGCTCTTCCTTTCATGGAGAGTTGTCTTCCTTCGCTCGATATTCAACCTATCCGAAACCTATTTCCAGGAGATGATTTTTCCTTTGGAGATAATGGAAATGAGACTGAGAATGGAGTTAACAGTGAGTTGTTCGCTTCTGGGTTTGAGCGCCCTAATCATCATCATCAACAAGAACAAGAACAACAACAGCAGCAGCAGCAGCAACAACAACATCAACAACAAGAAAAGCAGCAACCTAATTTACTGCTTCCTAGCAATGAAGATCAAAGTGGTGCTGATAGAGAACATGTGGGTGAAGAGAAGAAGAGGAAGAGGCGGTGCATGAGAATTGATCATGAAGTGAAAAGTGGTAGTAGTACTAGAAGCTATTCATCGTCGAGATTGTTGTCTAGGGAAACAATCTCCTCGTACTTTTACATGCCTATAACTCAGGCAGCTAAGGAACTCAACATCGGCTTGACCCTTTTGAAGAAAAGGTGCCGGGAGTTGGGTATTCGTCGTTGGCCTCATCGGAAACTCACCAGCCTCCAAACCCTAATCCGGAACATTCAGGAGTTGGGAAAGGAAGAAGAGGAGAACGAAGAGAAGCTTCGGAATGCGATCGAGTTGTTGGAGAGGGAGAAGAAGTTGATGGAGGAAGCTCCTGATATGCAACTGGAGGATAATACCAAGCGGTTGAGACAGGCTTGTTTTAAGGCCAACTACAAGAAGAGAAAGATCATGGGGATGAATCTGATTGATTATCCACCGCATTCTTCTAATTTCAGCACCATTGATACTCGTGGAGGCAAGTCCGTCGCTATTCTTGACAATCGAGGAGACGAGGAGGACGAAGACATTAAGTCACTTTTATCTGACTCCTTCTCATCTTCCTCTAGCATGATGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

359

Amino Acids

41.59

Weight (kDa)

5.59

Isoelectric Point (pI)

70.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 192 - 239 1.5e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18790 AT1G74480
fragaria_vesca FvH4_5g14910
malus_domestica MD06G1193600.v1.1
prunus_persica Prupe.5G193900_v2.0.a1
pyrus_communis pycom14g16650
rosa_chinensis RchiOBHm_Chr7g0181471
rosa_laevigata RLG00000005191
rosa_multiflora Rmu_sc0002060.1_g000022 Rmu_sc0002993.1_g000018 Rmu_sc0004621.1_g000024
rosa_roxburghii Rroxscaffold_3G00271970
rosa_rugosa Rorug06G0441600
rosa_samantha Rh7AG043400 Rh7BG042800 Rh7CG044600 Rh7DG043200
rosa_wichuraiana Rw7G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 729
AciI CCGC 4 cut(s) 158, 505, 862, 938
AclWI GGATC 2 cut(s) 62, 75
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 3 cut(s) 135, 547, 599
AfiI CCNNNNNNNGG 3 cut(s) 52, 676, 729
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 233, 658
AhdI GACNNNNNGTC 1 cut(s) 1030
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 4 cut(s) 555, 626, 778, 830
AluI AGCT 4 cut(s) 555, 626, 778, 830
Alw26I GTCTC 3 cut(s) 284, 862, 1002
AlwI GGATC 2 cut(s) 62, 75
Aor13HI TCCGGA 1 cut(s) 729
AoxI GGCC 2 cut(s) 692, 885
ApeKI GCWGC 6 cut(s) 379, 382, 385, 388, 418, 623
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 556
AspLEI GCGC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 3 cut(s) 8, 494, 700
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 666
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 2 cut(s) 206, 1029
BbvI GCAGC 6 cut(s) 391, 394, 397, 400, 430, 635
BccI CCATC 3 cut(s) 27, 157, 814
BcgI CGANNNNNNTGC 2 cut(s) 967, 1001
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 3 cut(s) 284, 862, 1002
BfaI CTAG 4 cut(s) 441, 549, 579, 1065
BfoI RGCGCY 1 cut(s) 340
BisI GCNGC 6 cut(s) 380, 383, 386, 389, 419, 624
BlsI GCNGC 6 cut(s) 381, 384, 387, 390, 420, 625
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 255, 671
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmiI GGNNCC 2 cut(s) 69, 668
BmrFI CCNGG 2 cut(s) 255, 671
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 206, 1029
BpmI CTGGAG 1 cut(s) 866
Bpu10I CCTNAGC 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 671
BsaWI WCCGGW 2 cut(s) 130, 729
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 676, 729
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 729
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 921
BseLI CCNNNNNNNGG 3 cut(s) 52, 676, 729
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 285, 632
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 4 cut(s) 583, 776, 1020, 1028
BseXI GCAGC 6 cut(s) 391, 394, 397, 400, 430, 635
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 2 cut(s) 694, 887
BshNI GGYRCC 1 cut(s) 666
BsiEI CGRYCG 1 cut(s) 792
BsiSI CCGG 3 cut(s) 131, 670, 730
BslI CCNNNNNNNGG 3 cut(s) 52, 676, 729
BsmAI GTCTC 3 cut(s) 284, 862, 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmI GAATGC 2 cut(s) 790, 940
BsnI GGCC 2 cut(s) 694, 887
Bsp13I TCCGGA 1 cut(s) 729
Bsp143I GATC 5 cut(s) 67, 451, 520, 789, 906
BspACI CCGC 4 cut(s) 158, 505, 862, 938
BspANI GGCC 2 cut(s) 694, 887
BspCNI CTCAG 2 cut(s) 286, 631
BspEI TCCGGA 1 cut(s) 729
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 69, 668
BspPI GGATC 2 cut(s) 62, 75
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 666
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 849
BssMI GATC 5 cut(s) 67, 451, 520, 789, 906
BssSI CACGAG 1 cut(s) 969
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 8 cut(s) 5, 198, 480, 488, 494, 753, 765, 893
BstDEI CTNAG 4 cut(s) 63, 294, 618, 627
BstF5I GGATG 1 cut(s) 921
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 5 cut(s) 70, 454, 523, 792, 909
BstMAI GTCTC 3 cut(s) 284, 862, 1002
BstMBI GATC 5 cut(s) 67, 451, 520, 789, 906
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 3 cut(s) 166, 385, 388
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 479, 610
BstSCI CCNGG 2 cut(s) 253, 669
BstV1I GCAGC 6 cut(s) 391, 394, 397, 400, 430, 635
BstV2I GAAGAC 2 cut(s) 206, 1029
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 2 cut(s) 694, 887
BtsCI GGATG 1 cut(s) 921
BtsIMutI CAGTG 2 cut(s) 124, 316
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 339
Csp6I GTAC 3 cut(s) 134, 546, 598
CviAII CATG 7 cut(s) 202, 476, 511, 524, 607, 910, 1069
CviJI RGCY 9 cut(s) 555, 626, 645, 694, 714, 778, 830, 875, 887
CviKI_1 RGCY 9 cut(s) 555, 626, 645, 694, 714, 778, 830, 875, 887
CviQI GTAC 3 cut(s) 134, 546, 598
DdeI CTNAG 4 cut(s) 63, 294, 618, 627
DpnI GATC 5 cut(s) 69, 453, 522, 791, 908
DpnII GATC 5 cut(s) 67, 451, 520, 789, 906
DriI GACNNNNNGTC 1 cut(s) 1030
Eam1104I CTCTTC 8 cut(s) 5, 198, 480, 488, 494, 753, 765, 893
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 8 cut(s) 5, 198, 480, 488, 494, 753, 765, 893
EciI GGCGGA 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 7 cut(s) 205, 479, 514, 527, 610, 913, 1072
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FatI CATG 7 cut(s) 201, 475, 510, 523, 606, 909, 1068
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 6 cut(s) 380, 383, 386, 389, 419, 624
FokI GGATG 1 cut(s) 928
Fsp4HI GCNGC 6 cut(s) 380, 383, 386, 389, 419, 624
FspBI CTAG 4 cut(s) 441, 549, 579, 1065
GlaI GCGC 1 cut(s) 338
GluI GCNGC 6 cut(s) 380, 383, 386, 389, 419, 624
GsuI CTGGAG 1 cut(s) 866
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 2 cut(s) 694, 887
HapII CCGG 3 cut(s) 131, 670, 730
HhaI GCGC 1 cut(s) 339
Hin1II CATG 7 cut(s) 205, 479, 514, 527, 610, 913, 1072
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 4 cut(s) 13, 25, 919, 1046
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 3 cut(s) 131, 670, 730
HphI GGTGA 3 cut(s) 8, 494, 700
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 6 cut(s) 24, 242, 702, 783, 924, 1045
Hpy188III TCNNGA 7 cut(s) 71, 524, 567, 730, 740, 833, 995
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 3 cut(s) 568, 690, 989
HpyAV CCTTC 2 cut(s) 228, 1060
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 169, 510, 841
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 385, 388
HpyF3I CTNAG 4 cut(s) 63, 294, 618, 627
Hsp92II CATG 7 cut(s) 205, 479, 514, 527, 610, 913, 1072
HspAI GCGC 1 cut(s) 337
Kpn2I TCCGGA 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 5 cut(s) 67, 451, 520, 789, 906
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 133, 835
Lsp1109I GCAGC 6 cut(s) 391, 394, 397, 400, 430, 635
LweI GCATC 1 cut(s) 178
MaeI CTAG 4 cut(s) 441, 549, 579, 1065
MaeIII GTNAC 3 cut(s) 14, 41, 1032
MalI GATC 5 cut(s) 69, 453, 522, 791, 908
MboI GATC 5 cut(s) 67, 451, 520, 789, 906
MflI RGATCY 1 cut(s) 67
MluCI AATT 6 cut(s) 49, 98, 152, 427, 516, 949
MlyI GAGTC 3 cut(s) 22, 34, 1040
MmeI TCCRAC 1 cut(s) 780
MroI TCCGGA 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 3 cut(s) 306, 882, 1029
MslI CAYNNNNRTG 2 cut(s) 480, 914
MspI CCGG 3 cut(s) 131, 670, 730
MspR9I CCNGG 2 cut(s) 255, 671
Mva1269I GAATGC 2 cut(s) 790, 940
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 166, 385, 388
NciI CCSGG 1 cut(s) 671
NdeII GATC 5 cut(s) 67, 451, 520, 789, 906
NlaIII CATG 7 cut(s) 205, 479, 514, 527, 610, 913, 1072
NlaIV GGNNCC 2 cut(s) 69, 668
NmuCI GTSAC 2 cut(s) 14, 1032
NspI RCATGY 2 cut(s) 479, 610
PagI TCATGA 1 cut(s) 523
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 1017
PctI GAATGC 2 cut(s) 790, 940
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 919
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 6 cut(s) 381, 384, 387, 390, 420, 625
Ple19I CGATCG 1 cut(s) 792
PleI GAGTC 3 cut(s) 21, 33, 1040
PpsI GAGTC 3 cut(s) 21, 33, 1040
PscI ACATGT 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 69, 668
PsuI RGATCY 1 cut(s) 67
PvuI CGATCG 1 cut(s) 792
RsaI GTAC 3 cut(s) 135, 547, 599
RsaNI GTAC 3 cut(s) 134, 546, 598
RseI CAYNNNNRTG 2 cut(s) 480, 914
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 306, 882, 1029
SatI GCNGC 6 cut(s) 380, 383, 386, 389, 419, 624
Sau3AI GATC 5 cut(s) 67, 451, 520, 789, 906
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 3 cut(s) 22, 34, 1040
ScrFI CCNGG 2 cut(s) 255, 671
SetI ASST 8 cut(s) 238, 249, 427, 557, 628, 668, 780, 832
SfaNI GCATC 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 480, 914
Sse9I AATT 6 cut(s) 49, 98, 152, 427, 516, 949
SsiI CCGC 4 cut(s) 158, 505, 862, 938
SspMI CTAG 4 cut(s) 441, 549, 579, 1065
StyD4I CCNGG 2 cut(s) 253, 669
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 4 cut(s) 225, 566, 792, 1003
TasI AATT 6 cut(s) 49, 98, 152, 427, 516, 949
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 1 cut(s) 919
Tru1I TTAA 3 cut(s) 306, 882, 1029
Tru9I TTAA 3 cut(s) 306, 882, 1029
TscAI CASTG 2 cut(s) 124, 316
TseFI GTSAC 2 cut(s) 14, 1032
TseI GCWGC 6 cut(s) 379, 382, 385, 388, 418, 623
Tsp45I GTSAC 2 cut(s) 14, 1032
TspDTI ATGAA 7 cut(s) 23, 165, 190, 462, 540, 549, 932
TspGWI ACGGA 1 cut(s) 973
TspRI CASTG 2 cut(s) 124, 316
XapI RAATTY 1 cut(s) 152
XceI RCATGY 2 cut(s) 479, 610
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 4 cut(s) 441, 549, 579, 1065
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.