Rroxscaffold_3G00271970

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012997
Physical Location & Seq
Reverse (-)
64233174 .. 64234576
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271970.1

Sequence Viewer

Length: 1092 bp
ATGACAATGAAGAATCACCATCAGAGTCGTTCCCTGACGAGTAACCCTAATTGGGTAGTTTCTAAGGATCATGAAAACCCATTCTCATTCCCAAATCAATTTTCTCCTGCTGATTTCAGTGGGTATGCTCCGGCGCTTGATTGGGAAAATGAATTTCCGCCAATGGTGCAAGACTACACTTTTATTGATGCTCTTCCTTTCATGGAGAGTCGTCTTCCTTCGCTCGATATTCAACATATCCGAAGCGTATTTCCAGGAGATGATTTTTCCTTTGGAGATAATGGAAATGAGACTGAGAATGGAGTTAACAGTGAGTTGTTCGCTTCTGGGTTTGAGCGCCCTAATCATCATCATCAACAAGAACAAGAACAAGAACAAGAACAACAGCAACAGCAGCAGCAGCAGCAACAACAACATCAACAACAAGAAAAGCAGCAACCTAATTTACTGCTTCCTAGCAATGAAGATCAAAGTGATGCTGATAGAGAACATGTGGGTGAAGAGAACTGTAAGAGGCGGTGCATGAGAATTGATCATGAAGTGAAAAGTGGTGGTAGTACTAGAAGCTATTCATCGTCGAGATTGTTGTCTAGGGAAACAATCTCCCCGTACTTTTACATGCCTATAACGCAGGCAGCTAAGGAACTCAACATCGGCTTGACCCTTTTGAAGAAAAGGTGCCGGGAGTTGGGTATTCGTCGTTGGCCTCATCGGAAACTCACCAGCCTCCAAACCCTAATCCGGAACATTCAGGAGCTGGGAAAGGAAGAAGAGGAGAACGAAGAGAAGCTTCGGAATGCGATCGAGTTGTTGGAGAGGGAGAAGAAGTTGATGGAGGAAGCTCCTGATATGCAACTGGAGGATAATACCAAGCGGTTGAGACAGGCTTGTTTTAAGGCCAACTACAAGAAGAGAAAGGTCATGGGGATGAATCTGATTGATTATCCACCCCATTCTTCTAATTTCAGCACCATTGATACTCGTGGAGGCAAGTCCATCGCTATTCTTGACAATCGAGGAGACGAGGAAGACGAAGAGATTAAGTCACTTTTGTCTGACTCCTTCTCATCTTCCTCTAGCATGATGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

363

Amino Acids

42.18

Weight (kDa)

5.35

Isoelectric Point (pI)

73.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 196 - 243 1.6e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18790 AT1G74480
fragaria_vesca FvH4_5g14910
malus_domestica MD06G1193600.v1.1
prunus_persica Prupe.5G193900_v2.0.a1
pyrus_communis pycom14g16650
rosa_chinensis RchiOBHm_Chr7g0181471
rosa_laevigata RLG00000005191
rosa_multiflora Rmu_sc0002060.1_g000022 Rmu_sc0002993.1_g000018 Rmu_sc0004621.1_g000024
rosa_roxburghii Rroxscaffold_3G00271970
rosa_rugosa Rorug06G0441600
rosa_samantha Rh7AG043400 Rh7BG042800 Rh7CG044600 Rh7DG043200
rosa_wichuraiana Rw7G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 678
AccIII TCCGGA 1 cut(s) 741
AciI CCGC 3 cut(s) 158, 517, 874
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 2 cut(s) 559, 611
AfiI CCNNNNNNNGG 3 cut(s) 52, 688, 741
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 2 cut(s) 233, 670
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 5 cut(s) 567, 638, 757, 790, 842
AluI AGCT 5 cut(s) 567, 638, 757, 790, 842
Alw26I GTCTC 3 cut(s) 284, 874, 1014
AlwI GGATC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 757
Aor13HI TCCGGA 1 cut(s) 741
AoxI GGCC 2 cut(s) 704, 897
ApeKI GCWGC 6 cut(s) 394, 397, 400, 403, 433, 635
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 2 cut(s) 136, 339
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 3 cut(s) 8, 509, 712
BanI GGYRCC 1 cut(s) 678
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 2 cut(s) 206, 1035
BbvI GCAGC 6 cut(s) 406, 409, 412, 415, 445, 647
BccI CCATC 3 cut(s) 27, 826, 1004
BcgI CGANNNNNNTGC 2 cut(s) 979, 1013
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 284, 874, 1014
BfaI CTAG 4 cut(s) 456, 561, 591, 1077
BfoI RGCGCY 2 cut(s) 137, 340
BisI GCNGC 6 cut(s) 395, 398, 401, 404, 434, 636
BlsI GCNGC 6 cut(s) 396, 399, 402, 405, 435, 637
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 255, 683
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 2 cut(s) 255, 683
BmsI GCATC 2 cut(s) 178, 466
BpiI GAAGAC 2 cut(s) 206, 1035
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 683
BsaWI WCCGGW 1 cut(s) 741
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 688, 741
Bse1I ACTGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 741
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 933
BseLI CCNNNNNNNGG 3 cut(s) 52, 688, 741
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 861
BseRI GAGGAG 2 cut(s) 788, 1032
BseXI GCAGC 6 cut(s) 406, 409, 412, 415, 445, 647
BseYI CCCAGC 1 cut(s) 757
Bsh1285I CGRYCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 706, 899
BshNI GGYRCC 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 804
BsiSI CCGG 3 cut(s) 131, 682, 742
BslI CCNNNNNNNGG 3 cut(s) 52, 688, 741
BsmAI GTCTC 3 cut(s) 284, 874, 1014
BsmBI CGTCTC 1 cut(s) 1014
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 2 cut(s) 706, 899
Bsp13I TCCGGA 1 cut(s) 741
Bsp143I GATC 4 cut(s) 67, 466, 532, 801
BspACI CCGC 3 cut(s) 158, 517, 874
BspANI GGCC 2 cut(s) 706, 899
BspCNI CTCAG 1 cut(s) 286
BspEI TCCGGA 1 cut(s) 741
BspHI TCATGA 2 cut(s) 70, 535
BspLI GGNNCC 1 cut(s) 680
BspPI GGATC 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 466
BsrI ACTGG 1 cut(s) 861
BssMI GATC 4 cut(s) 67, 466, 532, 801
BssSI CACGAG 1 cut(s) 981
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 311, 509
Bst6I CTCTTC 6 cut(s) 198, 495, 765, 777, 905, 1029
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 3 cut(s) 63, 294, 639
BstF5I GGATG 1 cut(s) 933
BstH2I RGCGCY 2 cut(s) 137, 340
BstHHI GCGC 2 cut(s) 136, 339
BstKTI GATC 4 cut(s) 70, 469, 535, 804
BstMAI GTCTC 3 cut(s) 284, 874, 1014
BstMBI GATC 4 cut(s) 67, 466, 532, 801
BstMCI CGRYCG 1 cut(s) 804
BstMWI GCNNNNNNNGC 5 cut(s) 166, 394, 400, 403, 628
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 494, 622
BstSCI CCNGG 2 cut(s) 253, 681
BstV1I GCAGC 6 cut(s) 406, 409, 412, 415, 445, 647
BstV2I GAAGAC 2 cut(s) 206, 1035
BsuRI GGCC 2 cut(s) 706, 899
BtgZI GCGATG 1 cut(s) 982
BtsCI GGATG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 124, 316
Cac8I GCNNGC 1 cut(s) 633
CaiI CAGNNNCTG 1 cut(s) 757
CciI TCATGA 2 cut(s) 70, 535
CfoI GCGC 2 cut(s) 136, 339
Csp6I GTAC 2 cut(s) 558, 610
CviAII CATG 8 cut(s) 71, 202, 491, 523, 536, 619, 922, 1081
CviQI GTAC 2 cut(s) 558, 610
DdeI CTNAG 3 cut(s) 63, 294, 639
DpnI GATC 4 cut(s) 69, 468, 534, 803
DpnII GATC 4 cut(s) 67, 466, 532, 801
Eam1104I CTCTTC 6 cut(s) 198, 495, 765, 777, 905, 1029
EarI CTCTTC 6 cut(s) 198, 495, 765, 777, 905, 1029
EciI GGCGGA 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 1014
FaeI CATG 8 cut(s) 74, 205, 494, 526, 539, 622, 925, 1084
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FatI CATG 8 cut(s) 70, 201, 490, 522, 535, 618, 921, 1080
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 6 cut(s) 395, 398, 401, 404, 434, 636
FokI GGATG 1 cut(s) 940
Fsp4HI GCNGC 6 cut(s) 395, 398, 401, 404, 434, 636
FspBI CTAG 4 cut(s) 456, 561, 591, 1077
GlaI GCGC 2 cut(s) 135, 338
GluI GCNGC 6 cut(s) 395, 398, 401, 404, 434, 636
GsaI CCCAGC 1 cut(s) 761
GsuI CTGGAG 1 cut(s) 878
HaeII RGCGCY 2 cut(s) 137, 340
HaeIII GGCC 2 cut(s) 706, 899
HapII CCGG 3 cut(s) 131, 682, 742
HhaI GCGC 2 cut(s) 136, 339
Hin1II CATG 8 cut(s) 74, 205, 494, 526, 539, 622, 925, 1084
Hin6I GCGC 2 cut(s) 134, 337
HinP1I GCGC 2 cut(s) 134, 337
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 5 cut(s) 13, 25, 208, 931, 1058
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 3 cut(s) 131, 682, 742
HphI GGTGA 3 cut(s) 8, 509, 712
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 6 cut(s) 24, 242, 714, 795, 936, 1057
Hpy188III TCNNGA 7 cut(s) 71, 536, 579, 742, 752, 845, 1007
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 580, 702
HpyAV CCTTC 2 cut(s) 228, 1072
HpyCH4III ACNGT 2 cut(s) 311, 509
HpyCH4V TGCA 3 cut(s) 169, 522, 853
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 394, 400, 403, 628
HpyF3I CTNAG 3 cut(s) 63, 294, 639
Hsp92II CATG 8 cut(s) 74, 205, 494, 526, 539, 622, 925, 1084
HspAI GCGC 2 cut(s) 134, 337
Kpn2I TCCGGA 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 67, 466, 532, 801
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 133, 754, 847
Lsp1109I GCAGC 6 cut(s) 406, 409, 412, 415, 445, 647
LweI GCATC 2 cut(s) 178, 466
MaeI CTAG 4 cut(s) 456, 561, 591, 1077
MaeIII GTNAC 2 cut(s) 41, 1044
MalI GATC 4 cut(s) 69, 468, 534, 803
MboI GATC 4 cut(s) 67, 466, 532, 801
MluCI AATT 6 cut(s) 49, 98, 152, 442, 528, 961
MlyI GAGTC 3 cut(s) 34, 217, 1052
MmeI TCCRAC 1 cut(s) 792
MroI TCCGGA 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 568
MseI TTAA 3 cut(s) 306, 894, 1041
MslI CAYNNNNRTG 2 cut(s) 495, 926
MspI CCGG 3 cut(s) 131, 682, 742
MspR9I CCNGG 2 cut(s) 255, 683
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 5 cut(s) 166, 394, 400, 403, 628
NciI CCSGG 1 cut(s) 683
NdeII GATC 4 cut(s) 67, 466, 532, 801
NlaIII CATG 8 cut(s) 74, 205, 494, 526, 539, 622, 925, 1084
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 1 cut(s) 1044
NspI RCATGY 2 cut(s) 494, 622
PagI TCATGA 2 cut(s) 70, 535
PciI ACATGT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PctI GAATGC 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 13, 931
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 6 cut(s) 396, 399, 402, 405, 435, 637
Ple19I CGATCG 1 cut(s) 804
PleI GAGTC 3 cut(s) 33, 216, 1052
PpsI GAGTC 3 cut(s) 33, 216, 1052
PscI ACATGT 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 680
PstNI CAGNNNCTG 1 cut(s) 757
PvuI CGATCG 1 cut(s) 804
RsaI GTAC 2 cut(s) 559, 611
RsaNI GTAC 2 cut(s) 558, 610
RseI CAYNNNNRTG 2 cut(s) 495, 926
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 306, 894, 1041
SatI GCNGC 6 cut(s) 395, 398, 401, 404, 434, 636
Sau3AI GATC 4 cut(s) 67, 466, 532, 801
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 3 cut(s) 34, 217, 1052
ScrFI CCNGG 2 cut(s) 255, 683
SetI ASST 8 cut(s) 442, 569, 640, 680, 759, 792, 844, 921
SfaNI GCATC 2 cut(s) 178, 466
SmiMI CAYNNNNRTG 2 cut(s) 495, 926
Sse9I AATT 6 cut(s) 49, 98, 152, 442, 528, 961
SsiI CCGC 3 cut(s) 158, 517, 874
SspMI CTAG 4 cut(s) 456, 561, 591, 1077
StyD4I CCNGG 2 cut(s) 253, 681
TaaI ACNGT 2 cut(s) 311, 509
TaqI TCGA 4 cut(s) 225, 578, 804, 1015
TasI AATT 6 cut(s) 49, 98, 152, 442, 528, 961
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 2 cut(s) 13, 931
Tru1I TTAA 3 cut(s) 306, 894, 1041
Tru9I TTAA 3 cut(s) 306, 894, 1041
TscAI CASTG 2 cut(s) 124, 316
TseFI GTSAC 1 cut(s) 1044
TseI GCWGC 6 cut(s) 394, 397, 400, 403, 433, 635
Tsp45I GTSAC 1 cut(s) 1044
TspDTI ATGAA 8 cut(s) 23, 87, 165, 190, 477, 552, 561, 944
TspRI CASTG 2 cut(s) 124, 316
XapI RAATTY 1 cut(s) 152
XceI RCATGY 2 cut(s) 494, 622
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 4 cut(s) 456, 561, 591, 1077
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.