Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Reverse (-)

6554496 .. 6555610

Gene Structure 1115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTACTCTCCAAATACCTTCTGCTCTTTTAAGATCTTTCCTTCTTATGTTTTGTCTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTTGGCGATCTCAAAGCTTCTGCTTCCATCAATGGCTTTCCATGCAAATCAGCCGTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGCCCCTTAGACACGTCAAACCCTAACGGAGTAACCGTTGCTCCCGCCAACGTCTTAACCTTCCCGGGTCTAAACACTTTAGGAATCTCGATGAATAACGTTGAGCTAGCTCCAGGAGGTGTAAATCCGCCTCACTTGCACCCGCGTGCAACCGAAGTAGGAACTGTGATCGAAGGCTCGGTGTTTGTCGGATTCTTGAGTACCAACAACACTTTGTTCTCAAAAGTTTTGAATGCAGGAGAGGCGTTTGTTATCCCTAGAGGATTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGAATGATAACCGCTTTTAACAGCCAGCTCCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTCGGCTCGAAACCTGAGATTCCAAACGCAGTCCTGACCAGAGCGTTTAGGACTGATGATACAACTGTGCAGAATCTCAAGTCCAAGTTTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

220

Amino Acids

23.21

Weight (kDa)

6.81

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 212	2.9e-47	Cupin
Cupin_2	PF07883	101 - 173	1.3e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	346, 505
AciI	CCGC	4 cut(s)	246, 329, 344, 516
AclI	AACGTT	2 cut(s)	300, 486
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	490
AfaI	GTAC	2 cut(s)	403, 559
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	313, 535
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	128, 307, 311, 532
AluI	AGCT	4 cut(s)	128, 307, 311, 532
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	202, 490
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	2 cut(s)	266, 267
AsuNHI	GCTAGC	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	265
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BalI	TGGCCA	1 cut(s)	492
BccI	CCATC	2 cut(s)	79, 146
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	315, 537
BcnI	CCSGG	2 cut(s)	266, 267
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	308, 459, 555
BglII	AGATCT	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	4 cut(s)	266, 267, 315, 537
BmeT110I	CYCGRG	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	4 cut(s)	266, 267, 315, 537
BmtI	GCTAGC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	418, 626
BpuMI	CCSGG	2 cut(s)	266, 267
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	265, 535
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	6 cut(s)	222, 226, 252, 256, 531, 561
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	315, 537
BseDI	CCNNGG	2 cut(s)	265, 535
BseJI	GATNNNNATC	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	2 cut(s)	346, 505
BshFI	GGCC	2 cut(s)	204, 492
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	192, 266
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	204, 492
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	35, 91, 118, 369
BspACI	CCGC	4 cut(s)	246, 329, 344, 516
BspANI	GGCC	2 cut(s)	204, 492
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	346, 505
BspLI	GGNNCC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	265, 535
BssMI	GATC	4 cut(s)	35, 91, 118, 369
Bst2UI	CCWGG	2 cut(s)	315, 537
Bst4CI	ACNGT	3 cut(s)	238, 367, 631
BstC8I	GCNNGC	3 cut(s)	309, 348, 530
BstDEI	CTNAG	2 cut(s)	208, 579
BstFNI	CGCG	2 cut(s)	346, 505
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	4 cut(s)	38, 94, 121, 372
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	35, 91, 118, 369
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 170, 337, 443
BstNI	CCWGG	2 cut(s)	315, 537
BstSCI	CCNGG	4 cut(s)	264, 265, 313, 535
BstUI	CGCG	2 cut(s)	346, 505
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	204, 492
BtrI	CACGTC	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	309, 348, 530
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	203
Cfr9I	CCCGGG	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	402, 558
CviAII	CATG	1 cut(s)	153
CviQI	GTAC	2 cut(s)	402, 558
DdeI	CTNAG	2 cut(s)	208, 579
DpnI	GATC	4 cut(s)	37, 93, 120, 371
DpnII	GATC	4 cut(s)	35, 91, 118, 369
EaeI	YGGCCR	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	313, 535
FaeI	CATG	1 cut(s)	156
FaiI	YATR	2 cut(s)	50, 154
FatI	CATG	1 cut(s)	152
FauI	CCCGC	2 cut(s)	253, 351
FspBI	CTAG	3 cut(s)	308, 459, 555
GlaI	GCGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	204, 492
HapII	CCGG	2 cut(s)	192, 266
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	5 cut(s)	86, 285, 393, 583, 637
HpaII	CCGG	2 cut(s)	192, 266
Hpy188I	TCNGA	4 cut(s)	85, 91, 178, 392
Hpy188III	TCNNGA	3 cut(s)	289, 397, 598
HpyAV	CCTTC	4 cut(s)	30, 53, 271, 368
HpyCH4III	ACNGT	3 cut(s)	238, 367, 631
HpyCH4IV	ACGT	4 cut(s)	215, 252, 300, 486
HpyCH4V	TGCA	5 cut(s)	156, 340, 350, 437, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 170, 337, 443
HpyF3I	CTNAG	2 cut(s)	208, 579
HpySE526I	ACGT	4 cut(s)	215, 252, 300, 486
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	4 cut(s)	35, 91, 118, 369
LmnI	GCTCC	4 cut(s)	247, 316, 537, 539
MaeI	CTAG	3 cut(s)	308, 459, 555
MaeII	ACGT	4 cut(s)	215, 252, 300, 486
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	37, 93, 120, 371
MboI	GATC	4 cut(s)	35, 91, 118, 369
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	311, 342, 436, 455
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	3 cut(s)	32, 257, 522
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	2 cut(s)	192, 266
MspR9I	CCNGG	4 cut(s)	266, 267, 315, 537
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	315, 537
MvnI	CGCG	2 cut(s)	346, 505
MwoI	GCNNNNNNNGC	4 cut(s)	153, 170, 337, 443
NciI	CCSGG	2 cut(s)	266, 267
NdeII	GATC	4 cut(s)	35, 91, 118, 369
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	5 cut(s)	86, 285, 393, 583, 637
PfoI	TCCNGGA	1 cut(s)	313
Psp1406I	AACGTT	2 cut(s)	300, 486
Psp6I	CCWGG	2 cut(s)	313, 535
PspGI	CCWGG	2 cut(s)	313, 535
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	2 cut(s)	403, 559
RsaNI	GTAC	2 cut(s)	402, 558
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	32, 257, 522
Sau3AI	GATC	4 cut(s)	35, 91, 118, 369
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	559
ScrFI	CCNGG	4 cut(s)	266, 267, 315, 537
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	397, 641
SmoI	CTYRAG	2 cut(s)	397, 641
SsiI	CCGC	4 cut(s)	246, 329, 344, 516
SspMI	CTAG	3 cut(s)	308, 459, 555
StyD4I	CCNGG	4 cut(s)	264, 265, 313, 535
TaaI	ACNGT	3 cut(s)	238, 367, 631
TaiI	ACGT	4 cut(s)	218, 255, 303, 489
TaqI	TCGA	3 cut(s)	290, 372, 572
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	5 cut(s)	86, 285, 393, 583, 637
Tru1I	TTAA	3 cut(s)	32, 257, 522
Tru9I	TTAA	3 cut(s)	32, 257, 522
TspDTI	ATGAA	2 cut(s)	308, 461
TspGWI	ACGGA	1 cut(s)	243
TspMI	CCCGGG	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmaI	CCCGGG	1 cut(s)	265
XspI	CTAG	3 cut(s)	308, 459, 555
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.