Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Reverse (-)

9075374 .. 9077168

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTGACCTCATCAGGCCTAAGCTTCCACCAGCTATTCTGCCTCACACTTTCTGTACTGCTTCTTCTCCTGCCCTCCCATTCTGCAGACCCTGATCCATTACAAGACTTCTGTGTCGCAGATGTGAATTCCTCCCTATCAGTTAATGGCTTTCCTTGCAAACCCACATCACAGATTACATCAGATGACTTTTTCTTTGATGGGCTGAGCAAAGAAGGGAACACAACCAATCTGAATAAGGCGACTGTAACAGCTGGGAATGTCCTTGCATTTCCTGGGCTCAACACCCTTGGGATATCGATGAACAGAGTCGACTTTGCTCCAGGTGGAATCAATCCGCCGCACTGGCACCCTCGTGCAAGTGAGTCTGGGGTGGTCATTGAAGGAAAGCTACTTGTGGGGTTTGTGACAACTAAAAACGTGTATTACTCCAAGGTCTTGAGTGCTGGGCAGATGTTTGTGGTTCCGAGGGGACTTGTTCACTTTCAGCTAAACGTTGGCGAAGGGAAGGCCCTTGCCTTCACAGCTTTCAATAGTCACTTGCCAGGCTCTGCTGTACTTTCTTTTAATATGTTTGCTTCGACACCTTCCATCCCTGATGCAGTGTTAACTAAGGCTTTTCAAGTAGATGATGATGTTATCAGCAGCATTCGATCCAAGTTCGGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

224

Amino Acids

23.72

Weight (kDa)

6.02

Isoelectric Point (pI)

19.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	68 - 212	1.7e-46	Cupin
Cupin_2	PF07883	103 - 173	7.4e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	338, 341
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	89, 648
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	666
AfaI	GTAC	2 cut(s)	57, 558
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	383, 532, 623
AjnI	CCWGG	3 cut(s)	274, 322, 544
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	6 cut(s)	24, 34, 254, 391, 490, 527
AluI	AGCT	6 cut(s)	24, 34, 254, 391, 490, 527
AlwI	GGATC	2 cut(s)	89, 648
AlwNI	CAGNNNCTG	2 cut(s)	92, 551
AoxI	GGCC	2 cut(s)	16, 510
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspS9I	GGNCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	4 cut(s)	48, 80, 375, 407
BauI	CACGAG	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	2 cut(s)	194, 599
BciT130I	CCWGG	3 cut(s)	276, 324, 546
BfaI	CTAG	1 cut(s)	670
BfmI	CTRYAG	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	341, 646
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	2 cut(s)	342, 647
Bme1390I	CCNGG	3 cut(s)	276, 324, 546
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	350, 465
BmrFI	CCNGG	3 cut(s)	276, 324, 546
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	4 cut(s)	275, 289, 432, 467
Bse1I	ACTGG	1 cut(s)	350
BseBI	CCWGG	3 cut(s)	276, 324, 546
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	4 cut(s)	275, 289, 432, 467
BseGI	GGATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	657
BseYI	CCCAGC	2 cut(s)	254, 446
BshFI	GGCC	2 cut(s)	18, 512
BshNI	GGYRCC	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	18, 512
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	94, 653
Bsp1720I	GCTNAGC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	338, 341
BspANI	GGCC	2 cut(s)	18, 512
BspCNI	CTCAG	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	350, 465
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	2 cut(s)	89, 648
BspT107I	GGYRCC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	275, 289, 432, 467
BssMI	GATC	2 cut(s)	94, 653
BssNI	GRCGYC	1 cut(s)	666
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	289, 432
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	3 cut(s)	276, 324, 546
Bst4CI	ACNGT	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	20, 206, 612
BstF5I	GGATG	1 cut(s)	591
BstKTI	GATC	2 cut(s)	97, 656
BstMBI	GATC	2 cut(s)	94, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 346, 524
BstNI	CCWGG	3 cut(s)	276, 324, 546
BstSCI	CCNGG	3 cut(s)	274, 322, 544
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	657
Bsu15I	ATCGAT	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	18, 512
BsuTUI	ATCGAT	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	343, 609
CaiI	CAGNNNCTG	2 cut(s)	92, 551
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	299
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	56, 557
CviQI	GTAC	2 cut(s)	56, 557
DdeI	CTNAG	3 cut(s)	20, 206, 612
DpnI	GATC	2 cut(s)	96, 655
DpnII	GATC	2 cut(s)	94, 653
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	289, 432
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	274, 322, 544
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	2 cut(s)	289, 432
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	289, 432
FaiI	YATR	1 cut(s)	572
FaqI	GGGAC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	341, 646
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	341, 646
FspBI	CTAG	1 cut(s)	670
GluI	GCNGC	2 cut(s)	341, 646
GsaI	CCCAGC	2 cut(s)	258, 450
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	18, 512
HgaI	GACGC	1 cut(s)	655
Hin1I	GRCGYC	1 cut(s)	666
HincII	GTYRAC	3 cut(s)	6, 313, 609
HindII	GTYRAC	3 cut(s)	6, 313, 609
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	3 cut(s)	309, 330, 365
HpaI	GTTAAC	1 cut(s)	609
Hpy166II	GTNNAC	4 cut(s)	6, 313, 481, 609
Hpy188I	TCNGA	3 cut(s)	184, 234, 468
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	4 cut(s)	6, 313, 481, 609
HpyAV	CCTTC	6 cut(s)	209, 377, 497, 502, 529, 597
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	420, 495
HpyCH4V	TGCA	5 cut(s)	86, 159, 269, 359, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 346, 524
HpyF3I	CTNAG	3 cut(s)	20, 206, 612
HpySE526I	ACGT	2 cut(s)	420, 495
Hsp92I	GRCGYC	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	94, 653
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	657
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	670
MaeII	ACGT	2 cut(s)	420, 495
MaeIII	GTNAC	3 cut(s)	247, 406, 536
MalI	GATC	2 cut(s)	96, 655
MboI	GATC	2 cut(s)	94, 653
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	318, 374
MnlI	CCTC	6 cut(s)	19, 53, 85, 142, 363, 462
MseI	TTAA	3 cut(s)	144, 567, 608
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	3 cut(s)	276, 324, 546
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	3 cut(s)	276, 324, 546
MwoI	GCNNNNNNNGC	3 cut(s)	156, 346, 524
NdeII	GATC	2 cut(s)	94, 653
NlaIV	GGNNCC	2 cut(s)	350, 465
NmuCI	GTSAC	2 cut(s)	406, 536
OliI	CACNNNNGTG	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	342, 647
PleI	GAGTC	2 cut(s)	317, 373
PpsI	GAGTC	2 cut(s)	317, 373
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	274, 322, 544
PspFI	CCCAGC	2 cut(s)	254, 446
PspGI	CCWGG	3 cut(s)	274, 322, 544
PspN4I	GGNNCC	2 cut(s)	350, 465
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	92, 551
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	57, 558
RsaNI	GTAC	2 cut(s)	56, 557
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	144, 567, 608
SatI	GCNGC	2 cut(s)	341, 646
Sau3AI	GATC	2 cut(s)	94, 653
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	2 cut(s)	318, 374
ScrFI	CCNGG	3 cut(s)	276, 324, 546
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	1 cut(s)	127
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	338, 341
SspMI	CTAG	1 cut(s)	670
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	274, 322, 544
StyI	CCWWGG	2 cut(s)	289, 432
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	423, 498
TaqI	TCGA	4 cut(s)	299, 312, 581, 652
TasI	AATT	1 cut(s)	127
TatI	WGTACW	2 cut(s)	55, 556
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	3 cut(s)	144, 567, 608
Tru9I	TTAA	3 cut(s)	144, 567, 608
TscAI	CASTG	2 cut(s)	350, 609
TseFI	GTSAC	2 cut(s)	406, 536
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	2 cut(s)	406, 536
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	350, 609
XapI	RAATTY	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.